Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99893 * 2 1 4 4 H 1.48500 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47044 * 299.99972 * 3 2 1 6 6 H 1.48500 * 109.47087 * 59.99645 * 3 2 1 7 7 C 1.38810 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99975 * 198.51298 * 7 2 1 9 9 N 1.36939 * 119.99951 * 18.51090 * 7 2 1 10 10 C 1.47061 * 136.05632 * 8.23972 * 9 7 2 11 11 C 1.53749 * 87.88829 * 152.95791 * 10 9 7 12 12 N 1.46499 * 114.39910 * 272.67272 * 11 10 9 13 13 C 1.34769 * 120.00301 * 248.58787 * 12 11 10 14 14 O 1.21280 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.51492 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.52460 * 108.86955 * 61.48177 * 15 13 12 17 17 C 1.52130 * 112.69834 * 170.97885 * 16 15 13 18 18 C 1.52229 * 112.78288 * 315.27707 * 17 16 15 19 19 N 1.45842 * 112.46587 * 46.32434 * 18 17 16 20 20 C 1.45868 * 113.93617 * 70.88248 * 19 18 17 21 21 C 1.52265 * 112.28129 * 289.47789 * 20 19 18 22 22 C 1.52181 * 112.52359 * 312.82215 * 21 20 19 23 23 C 1.46476 * 112.01041 * 302.39933 * 19 18 17 24 24 C 1.47060 * 136.05757 * 188.60366 * 9 7 2 25 25 H 0.96992 * 119.99619 * 185.70144 * 1 2 3 26 26 H 1.09005 * 113.46339 * 267.69138 * 10 9 7 27 27 H 1.09003 * 113.47020 * 38.12867 * 10 9 7 28 28 H 1.09007 * 114.26816 * 139.79045 * 11 10 9 29 29 H 0.97002 * 119.99779 * 68.58543 * 12 11 10 30 30 H 1.09715 * 109.06282 * 292.45143 * 16 15 13 31 31 H 1.09715 * 109.04684 * 49.50898 * 16 15 13 32 32 H 1.10585 * 108.00761 * 196.15095 * 17 16 15 33 33 H 1.08736 * 110.87640 * 80.15239 * 17 16 15 34 34 H 1.09662 * 109.10789 * 284.98263 * 18 17 16 35 35 H 1.09643 * 109.12953 * 167.71065 * 18 17 16 36 36 H 1.09632 * 109.25053 * 168.26090 * 20 19 18 37 37 H 1.09617 * 109.27980 * 50.71928 * 20 19 18 38 38 H 1.10531 * 107.93557 * 193.69247 * 21 20 19 39 39 H 1.08693 * 110.81778 * 77.63282 * 21 20 19 40 40 H 1.09688 * 109.24578 * 284.39331 * 22 21 20 41 41 H 1.09669 * 109.25236 * 166.99167 * 22 21 20 42 42 H 1.08882 * 109.90902 * 305.33029 * 23 19 18 43 43 H 1.08878 * 109.93849 * 184.32828 * 23 19 18 44 44 H 1.09007 * 113.46995 * 321.86939 * 24 9 7 45 45 H 1.09001 * 113.46829 * 92.24491 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0483 -1.2262 0.2975 9 7 1.3788 -2.3575 -0.3755 10 6 0.0786 -2.7098 -0.9655 11 6 0.7491 -3.9619 -1.5542 12 7 1.3804 -3.7531 -2.8596 13 6 0.8607 -4.3323 -3.9599 14 8 -0.1294 -5.0268 -3.8694 15 6 1.5132 -4.1159 -5.3099 16 6 2.9349 -4.6645 -5.2639 17 6 3.5979 -4.6923 -6.6329 18 6 2.6814 -5.2341 -7.7209 19 7 1.3458 -4.6509 -7.6658 20 6 1.2941 -3.2507 -8.0714 21 6 1.9513 -2.3299 -7.0523 22 6 1.5051 -2.6245 -5.6275 23 6 0.7036 -4.8713 -6.3679 24 6 1.6997 -3.7926 -0.3610 25 1 -0.4849 -0.8359 0.0835 26 1 -0.6876 -2.9359 -0.2238 27 1 -0.2614 -2.0017 -1.7212 28 1 0.1344 -4.8611 -1.5119 29 1 2.1725 -3.1979 -2.9320 30 1 3.5354 -4.0472 -4.5842 31 1 2.9132 -5.6813 -4.8523 32 1 4.4810 -5.3551 -6.5716 33 1 3.9748 -3.7082 -6.9009 34 1 2.6044 -6.3229 -7.6161 35 1 3.1260 -5.0266 -8.7014 36 1 0.2479 -2.9512 -8.2043 37 1 1.7983 -3.1350 -9.0379 38 1 1.6604 -1.2914 -7.2944 39 1 3.0342 -2.3714 -7.1359 40 1 0.4920 -2.2318 -5.4773 41 1 2.1686 -2.1045 -4.9259 42 1 0.6967 -5.9345 -6.1334 43 1 -0.3164 -4.4912 -6.3890 44 1 2.7410 -4.0071 -0.6018 45 1 1.3618 -4.3039 0.5404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030513308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = 16.948642 kcal Electronic energy + Delta-G solvation = -25144.074798 eV Core-core repulsion = 21776.635058 eV Total energy + Delta-G solvation = -3367.439740 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.16301 -39.17562 -37.66085 -33.96820 -33.26170 -33.09427 -31.74400 -30.88509 -27.40985 -26.55685 -24.94834 -24.46644 -23.42456 -22.71421 -21.63952 -20.38292 -19.39119 -18.59559 -17.50923 -17.02845 -16.02200 -15.62156 -15.21496 -14.86768 -14.69504 -14.34624 -14.14714 -13.87867 -13.76584 -13.53023 -13.37801 -13.25123 -12.85266 -12.62232 -12.58112 -11.78643 -11.70567 -11.56065 -11.44908 -11.18115 -11.05613 -10.96887 -10.83115 -10.77157 -10.73909 -10.13209 -9.97475 -9.88590 -9.49387 -9.39634 -8.72154 -8.48382 -8.20339 -7.09578 -6.17207 -3.20685 2.87463 3.41712 3.43709 3.49211 3.59630 3.87265 4.46380 4.47616 4.52473 4.55137 4.78479 4.83286 4.97479 5.00494 5.00710 5.10224 5.23011 5.29468 5.32785 5.39086 5.39390 5.53882 5.63027 5.67839 5.74520 5.81323 5.89177 5.91343 5.95113 5.98704 6.02614 6.08152 6.16863 6.22919 6.26407 6.33326 6.57151 6.72652 7.00220 7.08845 7.14820 7.23780 7.90564 8.25160 8.52925 8.85722 9.70409 10.43784 11.23590 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.004557 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.263799 B = 6142.247909 C = 6787.621381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.031 4.031 3 Si 1.080 2.920 4 H -0.293 1.293 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.319 4.319 8 H 0.074 0.926 9 N -0.614 5.614 10 C 0.120 3.880 11 C 0.093 3.907 12 N -0.689 5.689 13 C 0.523 3.477 14 O -0.548 6.548 15 C -0.102 4.102 16 C -0.101 4.101 17 C -0.150 4.150 18 C 0.066 3.934 19 N -0.546 5.546 20 C 0.066 3.934 21 C -0.151 4.151 22 C -0.104 4.104 23 C 0.093 3.907 24 C 0.108 3.892 25 H 0.267 0.733 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.404 0.596 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.642 -9.114 -15.746 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.231 4.231 3 Si 0.909 3.091 4 H -0.219 1.219 5 H -0.217 1.217 6 H -0.220 1.220 7 C -0.446 4.446 8 H 0.092 0.908 9 N -0.342 5.342 10 C -0.007 4.007 11 C -0.013 4.013 12 N -0.338 5.338 13 C 0.308 3.692 14 O -0.426 6.426 15 C -0.107 4.107 16 C -0.139 4.139 17 C -0.189 4.189 18 C -0.062 4.062 19 N -0.266 5.266 20 C -0.062 4.062 21 C -0.190 4.190 22 C -0.142 4.142 23 C -0.036 4.036 24 C -0.019 4.019 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.117 0.883 29 H 0.239 0.761 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.671 -7.955 -16.011 18.756 hybrid contribution 1.055 -0.770 1.157 1.744 sum 6.726 -8.725 -14.854 18.493 Atomic orbital electron populations 1.70698 1.06362 1.30205 1.50060 1.25810 0.96839 1.00819 0.99638 0.83294 0.73818 0.75157 0.76796 1.21888 1.21669 1.22003 1.19839 0.94501 0.84561 1.45695 0.90779 1.46072 1.15145 1.00092 1.72909 1.22730 0.90115 0.92898 0.95004 1.22492 0.96841 0.99263 0.82740 1.45499 1.31376 1.50492 1.06415 1.20636 0.83991 0.79118 0.85436 1.90660 1.25954 1.39603 1.86379 1.21264 0.97331 0.98072 0.94016 1.21265 0.93506 1.01631 0.97455 1.21979 0.99074 1.02462 0.95427 1.21766 0.87294 0.99324 0.97808 1.60282 1.19850 1.17119 1.29385 1.21787 1.01395 0.85937 0.97111 1.21986 1.01334 1.00562 0.95082 1.21300 1.02950 0.92985 0.96947 1.21775 0.97058 1.00292 0.84454 1.22755 0.97222 0.87550 0.94352 0.92154 0.94110 0.92739 0.88328 0.76104 0.91483 0.91667 0.91943 0.91271 0.90977 0.91032 0.90844 0.91017 0.91725 0.91346 0.91383 0.91194 0.89901 0.89824 0.93677 0.93848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.59 13.34 55.49 0.74 -27.85 16 2 C -0.03 -0.88 5.45 -17.43 -0.09 -0.98 16 3 Si 1.08 25.30 29.96 -169.99 -5.09 20.21 16 4 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.32 -8.87 10.65 -15.06 -0.16 -9.03 16 8 H 0.07 2.02 7.89 -52.49 -0.41 1.61 16 9 N -0.61 -15.30 3.68 -184.66 -0.68 -15.98 16 10 C 0.12 2.77 5.98 -8.39 -0.05 2.72 16 11 C 0.09 1.78 4.61 -67.69 -0.31 1.46 16 12 N -0.69 -11.76 5.20 -53.21 -0.28 -12.04 16 13 C 0.52 8.57 6.35 -10.60 -0.07 8.50 16 14 O -0.55 -10.62 15.51 5.56 0.09 -10.54 16 15 C -0.10 -1.30 0.57 -155.73 -0.09 -1.39 16 16 C -0.10 -1.10 4.52 -27.45 -0.12 -1.22 16 17 C -0.15 -1.34 5.12 -27.57 -0.14 -1.48 16 18 C 0.07 0.59 5.77 -4.79 -0.03 0.57 16 19 N -0.55 -5.79 4.79 -236.54 -1.13 -6.92 16 20 C 0.07 0.63 5.77 -4.76 -0.03 0.60 16 21 C -0.15 -1.51 5.14 -27.52 -0.14 -1.65 16 22 C -0.10 -1.30 4.50 -27.41 -0.12 -1.42 16 23 C 0.09 1.16 4.18 -3.98 -0.02 1.14 16 24 C 0.11 2.16 8.44 -8.52 -0.07 2.09 16 25 H 0.27 8.18 5.92 -40.82 -0.24 7.94 16 26 H 0.04 0.96 7.98 -51.93 -0.41 0.54 16 27 H 0.05 1.39 7.95 -51.93 -0.41 0.98 16 28 H 0.10 1.82 7.45 -51.92 -0.39 1.43 16 29 H 0.40 6.71 7.87 -40.82 -0.32 6.39 16 30 H 0.07 0.73 7.85 -51.52 -0.40 0.33 16 31 H 0.06 0.73 8.14 -51.52 -0.42 0.32 16 32 H 0.06 0.49 8.27 -51.02 -0.42 0.06 16 33 H 0.07 0.60 5.72 -52.08 -0.30 0.31 16 34 H 0.07 0.63 8.20 -51.55 -0.42 0.21 16 35 H 0.07 0.55 8.10 -51.56 -0.42 0.13 16 36 H 0.07 0.72 8.19 -51.57 -0.42 0.30 16 37 H 0.07 0.59 8.10 -51.58 -0.42 0.17 16 38 H 0.06 0.62 8.27 -51.05 -0.42 0.20 16 39 H 0.07 0.64 5.68 -52.10 -0.30 0.35 16 40 H 0.07 0.96 8.14 -51.54 -0.42 0.54 16 41 H 0.07 0.92 7.76 -51.55 -0.40 0.52 16 42 H 0.08 1.09 8.07 -52.00 -0.42 0.67 16 43 H 0.08 1.15 8.08 -52.00 -0.42 0.73 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -32.18 340.78 -10.10 -42.28 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.43 Total: 5.78 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -1.45 Total: -0.07 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -1.35 Total: -62.79 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.54 kcal Atomic # 14 Polarization: 25.30 SS G_CDS: -5.09 Total: 20.21 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.18 -10.10 -42.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030513308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.226 kcal (2) G-P(sol) polarization free energy of solvation -32.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds