Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86802 * 119.99893 * 2 1 4 4 H 1.48500 * 109.47028 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47044 * 299.99972 * 3 2 1 6 6 H 1.48500 * 109.47087 * 59.99645 * 3 2 1 7 7 C 1.38810 * 120.00088 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99975 * 198.51298 * 7 2 1 9 9 N 1.36939 * 119.99951 * 18.51090 * 7 2 1 10 10 C 1.47061 * 136.05632 * 8.23972 * 9 7 2 11 11 C 1.53749 * 87.88829 * 152.95791 * 10 9 7 12 12 N 1.46499 * 114.39910 * 272.67272 * 11 10 9 13 13 C 1.34769 * 120.00301 * 248.58787 * 12 11 10 14 14 O 1.21280 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.51492 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.52460 * 108.86955 * 61.48177 * 15 13 12 17 17 C 1.52130 * 112.69834 * 170.97885 * 16 15 13 18 18 C 1.52229 * 112.78288 * 315.27707 * 17 16 15 19 19 N 1.45842 * 112.46587 * 46.32434 * 18 17 16 20 20 C 1.45868 * 113.93617 * 70.88248 * 19 18 17 21 21 C 1.52265 * 112.28129 * 289.47789 * 20 19 18 22 22 C 1.52181 * 112.52359 * 312.82215 * 21 20 19 23 23 C 1.46476 * 112.01041 * 302.39933 * 19 18 17 24 24 C 1.47060 * 136.05757 * 188.60366 * 9 7 2 25 25 H 0.96992 * 119.99619 * 185.70144 * 1 2 3 26 26 H 1.09005 * 113.46339 * 267.69138 * 10 9 7 27 27 H 1.09003 * 113.47020 * 38.12867 * 10 9 7 28 28 H 1.09007 * 114.26816 * 139.79045 * 11 10 9 29 29 H 0.97002 * 119.99779 * 68.58543 * 12 11 10 30 30 H 1.09715 * 109.06282 * 292.45143 * 16 15 13 31 31 H 1.09715 * 109.04684 * 49.50898 * 16 15 13 32 32 H 1.10585 * 108.00761 * 196.15095 * 17 16 15 33 33 H 1.08736 * 110.87640 * 80.15239 * 17 16 15 34 34 H 1.09662 * 109.10789 * 284.98263 * 18 17 16 35 35 H 1.09643 * 109.12953 * 167.71065 * 18 17 16 36 36 H 1.09632 * 109.25053 * 168.26090 * 20 19 18 37 37 H 1.09617 * 109.27980 * 50.71928 * 20 19 18 38 38 H 1.10531 * 107.93557 * 193.69247 * 21 20 19 39 39 H 1.08693 * 110.81778 * 77.63282 * 21 20 19 40 40 H 1.09688 * 109.24578 * 284.39331 * 22 21 20 41 41 H 1.09669 * 109.25236 * 166.99167 * 22 21 20 42 42 H 1.08882 * 109.90902 * 305.33029 * 23 19 18 43 43 H 1.08878 * 109.93849 * 184.32828 * 23 19 18 44 44 H 1.09007 * 113.46995 * 321.86939 * 24 9 7 45 45 H 1.09001 * 113.46829 * 92.24491 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0483 -1.2262 0.2975 9 7 1.3788 -2.3575 -0.3755 10 6 0.0786 -2.7098 -0.9655 11 6 0.7491 -3.9619 -1.5542 12 7 1.3804 -3.7531 -2.8596 13 6 0.8607 -4.3323 -3.9599 14 8 -0.1294 -5.0268 -3.8694 15 6 1.5132 -4.1159 -5.3099 16 6 2.9349 -4.6645 -5.2639 17 6 3.5979 -4.6923 -6.6329 18 6 2.6814 -5.2341 -7.7209 19 7 1.3458 -4.6509 -7.6658 20 6 1.2941 -3.2507 -8.0714 21 6 1.9513 -2.3299 -7.0523 22 6 1.5051 -2.6245 -5.6275 23 6 0.7036 -4.8713 -6.3679 24 6 1.6997 -3.7926 -0.3610 25 1 -0.4849 -0.8359 0.0835 26 1 -0.6876 -2.9359 -0.2238 27 1 -0.2614 -2.0017 -1.7212 28 1 0.1344 -4.8611 -1.5119 29 1 2.1725 -3.1979 -2.9320 30 1 3.5354 -4.0472 -4.5842 31 1 2.9132 -5.6813 -4.8523 32 1 4.4810 -5.3551 -6.5716 33 1 3.9748 -3.7082 -6.9009 34 1 2.6044 -6.3229 -7.6161 35 1 3.1260 -5.0266 -8.7014 36 1 0.2479 -2.9512 -8.2043 37 1 1.7983 -3.1350 -9.0379 38 1 1.6604 -1.2914 -7.2944 39 1 3.0342 -2.3714 -7.1359 40 1 0.4920 -2.2318 -5.4773 41 1 2.1686 -2.1045 -4.9259 42 1 0.6967 -5.9345 -6.1334 43 1 -0.3164 -4.4912 -6.3890 44 1 2.7410 -4.0071 -0.6018 45 1 1.3618 -4.3039 0.5404 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030513308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = -5.707890 kcal Electronic energy + Delta-G solvation = -25145.057259 eV Core-core repulsion = 21776.635058 eV Total energy + Delta-G solvation = -3368.422201 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.24194 -40.64716 -39.17491 -35.37155 -34.61992 -34.05624 -33.40555 -31.78896 -29.37176 -27.39359 -26.70872 -25.81351 -24.68383 -24.10712 -22.44878 -21.66828 -21.08998 -19.54857 -19.44713 -18.28357 -17.32583 -16.67653 -16.33738 -16.11600 -16.02548 -15.84341 -15.80245 -15.40760 -15.32411 -14.76589 -14.70830 -14.21225 -13.91655 -13.65211 -13.59009 -13.38876 -12.88629 -12.72407 -12.64916 -12.53397 -12.45139 -12.39833 -11.98080 -11.90483 -11.87968 -11.70135 -11.67282 -11.45755 -10.83533 -10.77398 -10.66896 -10.06139 -9.16878 -9.04513 -8.40186 -5.38849 1.51989 1.54938 1.64970 1.78271 2.06635 2.58004 3.02371 3.17516 3.25606 3.42626 3.52647 3.57316 3.63776 3.94058 4.03802 4.04553 4.18205 4.20965 4.29368 4.34262 4.38510 4.46967 4.51794 4.58145 4.64698 4.71158 4.77669 4.79321 4.88732 4.92613 4.95556 4.98113 5.05381 5.07740 5.09455 5.13782 5.25040 5.26858 5.44341 5.53281 6.09383 6.14266 6.38218 6.50368 6.64934 7.14704 7.57169 8.38565 9.02994 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.004557 C = 0.004124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.263799 B = 6142.247909 C = 6787.621381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.090 4.090 3 Si 1.129 2.871 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.293 1.293 7 C -0.319 4.319 8 H 0.079 0.921 9 N -0.639 5.639 10 C 0.117 3.883 11 C 0.118 3.882 12 N -0.687 5.687 13 C 0.521 3.479 14 O -0.579 6.579 15 C -0.091 4.091 16 C -0.098 4.098 17 C -0.146 4.146 18 C 0.063 3.937 19 N -0.549 5.549 20 C 0.064 3.936 21 C -0.145 4.145 22 C -0.101 4.101 23 C 0.098 3.902 24 C 0.115 3.885 25 H 0.252 0.748 26 H 0.033 0.967 27 H 0.020 0.980 28 H 0.110 0.890 29 H 0.407 0.593 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.331 -9.616 -17.369 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.283 4.283 3 Si 0.953 3.047 4 H -0.189 1.189 5 H -0.217 1.217 6 H -0.221 1.221 7 C -0.446 4.446 8 H 0.097 0.903 9 N -0.367 5.367 10 C -0.010 4.010 11 C 0.011 3.989 12 N -0.336 5.336 13 C 0.308 3.692 14 O -0.459 6.459 15 C -0.096 4.096 16 C -0.136 4.136 17 C -0.185 4.185 18 C -0.065 4.065 19 N -0.269 5.269 20 C -0.063 4.063 21 C -0.183 4.183 22 C -0.140 4.140 23 C -0.031 4.031 24 C -0.011 4.011 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.038 0.962 28 H 0.127 0.873 29 H 0.243 0.757 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.400 -8.500 -17.650 21.315 hybrid contribution 0.184 -0.705 1.667 1.819 sum 8.584 -9.206 -15.984 20.345 Atomic orbital electron populations 1.70824 1.07697 1.29416 1.53387 1.27263 0.96797 1.04544 0.99669 0.82660 0.74218 0.71342 0.76474 1.18860 1.21710 1.22058 1.20183 0.94861 0.85772 1.43786 0.90296 1.46303 1.15791 1.01604 1.73050 1.22746 0.89885 0.94084 0.94331 1.22181 0.95983 0.97265 0.83494 1.45502 1.31389 1.50705 1.06005 1.21386 0.83443 0.77960 0.86418 1.90640 1.27372 1.40954 1.86948 1.21249 0.98518 0.98467 0.91385 1.21280 0.91944 1.01183 0.99209 1.21940 0.99339 1.03430 0.93753 1.21889 0.86267 0.99373 0.98959 1.60284 1.21107 1.17859 1.27651 1.21858 1.01389 0.85161 0.97933 1.21952 1.02245 1.01020 0.93121 1.21292 1.01338 0.92462 0.98860 1.21606 0.96311 0.99531 0.85640 1.22860 0.98557 0.84611 0.95038 0.93729 0.94894 0.96176 0.87262 0.75672 0.91354 0.91998 0.90067 0.90528 0.90794 0.88848 0.91589 0.88544 0.91143 0.89769 0.93956 0.91933 0.90670 0.91910 0.91638 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.17 13.34 21.65 0.29 -60.88 16 2 C -0.09 -5.15 5.45 84.86 0.46 -4.69 16 3 Si 1.13 50.90 29.96 68.60 2.06 52.95 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 7 C -0.32 -17.67 10.65 84.03 0.90 -16.77 16 8 H 0.08 4.21 7.89 -2.91 -0.02 4.19 16 9 N -0.64 -31.97 3.68 -738.15 -2.72 -34.69 16 10 C 0.12 5.58 5.98 83.26 0.50 6.08 16 11 C 0.12 4.48 4.61 45.55 0.21 4.69 16 12 N -0.69 -23.36 5.20 -440.64 -2.29 -25.66 16 13 C 0.52 17.16 6.35 87.91 0.56 17.72 16 14 O -0.58 -22.84 15.51 -3.03 -0.05 -22.89 16 15 C -0.09 -2.27 0.57 -52.97 -0.03 -2.30 16 16 C -0.10 -1.94 4.52 30.13 0.14 -1.81 16 17 C -0.15 -2.10 5.12 30.05 0.15 -1.94 16 18 C 0.06 0.92 5.77 86.25 0.50 1.42 16 19 N -0.55 -10.57 4.79 -902.29 -4.32 -14.89 16 20 C 0.06 1.09 5.77 86.26 0.50 1.59 16 21 C -0.14 -2.61 5.14 30.08 0.15 -2.45 16 22 C -0.10 -2.49 4.50 30.15 0.14 -2.36 16 23 C 0.10 2.43 4.18 86.43 0.36 2.79 16 24 C 0.11 4.46 8.44 83.17 0.70 5.16 16 25 H 0.25 16.15 5.92 -92.71 -0.55 15.60 16 26 H 0.03 1.62 7.98 -2.38 -0.02 1.60 16 27 H 0.02 1.07 7.95 -2.39 -0.02 1.05 16 28 H 0.11 3.98 7.45 -2.38 -0.02 3.97 16 29 H 0.41 13.33 7.87 -92.71 -0.73 12.60 16 30 H 0.07 1.34 7.85 -2.01 -0.02 1.33 16 31 H 0.06 1.28 8.14 -2.01 -0.02 1.26 16 32 H 0.08 0.93 8.27 -1.53 -0.01 0.92 16 33 H 0.08 1.02 5.72 -2.53 -0.01 1.01 16 34 H 0.07 1.08 8.20 -2.03 -0.02 1.06 16 35 H 0.09 1.03 8.10 -2.04 -0.02 1.01 16 36 H 0.07 1.22 8.19 -2.05 -0.02 1.20 16 37 H 0.10 1.22 8.10 -2.06 -0.02 1.20 16 38 H 0.07 1.22 8.27 -1.56 -0.01 1.20 16 39 H 0.08 1.29 5.68 -2.55 -0.01 1.28 16 40 H 0.04 1.23 8.14 -2.02 -0.02 1.22 16 41 H 0.06 1.61 7.76 -2.03 -0.02 1.60 16 42 H 0.07 1.96 8.07 -2.45 -0.02 1.94 16 43 H 0.06 1.79 8.08 -2.45 -0.02 1.77 16 44 H 0.07 2.30 8.14 -2.38 -0.02 2.28 16 45 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -70.81 340.78 -1.31 -72.11 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.50 Total: 26.81 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: 5.23 Total: 7.13 kcal Atomic # 7 Polarization: -127.07 SS G_CDS: -9.05 Total: -136.12 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.06 Total: 52.95 kcal Total: -70.81 -1.31 -72.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030513308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.405 kcal (2) G-P(sol) polarization free energy of solvation -70.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds