Wall clock time and date at job start Tue Mar 31 2020 07:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00053 * 2 1 4 4 H 1.48497 * 109.47366 * 85.00914 * 3 2 1 5 5 H 1.48500 * 109.47209 * 325.00996 * 3 2 1 6 6 H 1.48498 * 109.47071 * 205.01078 * 3 2 1 7 7 C 1.38811 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00097 * 186.36800 * 7 2 1 9 9 N 1.36933 * 119.99805 * 6.36555 * 7 2 1 10 10 C 1.47068 * 136.05971 * 6.16737 * 9 7 2 11 11 C 1.53757 * 87.88851 * 152.96600 * 10 9 7 12 12 N 1.46505 * 114.56982 * 272.66450 * 11 10 9 13 13 C 1.34775 * 119.99803 * 248.66945 * 12 11 10 14 14 O 1.21278 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99913 * 180.02562 * 13 12 11 16 16 H 1.09002 * 110.13013 * 336.98910 * 15 13 12 17 17 C 1.54804 * 110.15308 * 98.75321 * 15 13 12 18 18 C 1.55330 * 104.99090 * 115.48015 * 17 15 13 19 19 C 1.53929 * 102.08359 * 337.80211 * 18 17 15 20 20 H 1.08997 * 111.54403 * 281.07697 * 19 18 17 21 21 C 1.52371 * 113.26171 * 155.07114 * 19 18 17 22 22 C 1.53632 * 107.59784 * 185.06900 * 21 19 18 23 23 C 1.52823 * 110.61345 * 56.41051 * 22 21 19 24 24 C 1.53642 * 110.64326 * 306.13327 * 23 22 21 25 25 N 1.45540 * 107.85739 * 57.13424 * 24 23 22 26 26 C 1.47070 * 136.05743 * 186.54005 * 9 7 2 27 27 H 0.97005 * 119.99996 * 0.02562 * 1 2 3 28 28 H 1.08995 * 113.46693 * 267.69694 * 10 9 7 29 29 H 1.08999 * 113.46382 * 38.13533 * 10 9 7 30 30 H 1.08997 * 114.09075 * 139.78556 * 11 10 9 31 31 H 0.96999 * 119.99779 * 68.67943 * 12 11 10 32 32 H 1.08994 * 110.33519 * 234.36269 * 17 15 13 33 33 H 1.09002 * 110.33524 * 356.59892 * 17 15 13 34 34 H 1.08999 * 110.90587 * 219.60798 * 18 17 15 35 35 H 1.08993 * 110.93799 * 96.01698 * 18 17 15 36 36 H 1.09003 * 109.83343 * 65.54505 * 21 19 18 37 37 H 1.08992 * 109.89009 * 304.62684 * 21 19 18 38 38 H 1.09000 * 109.24886 * 296.11561 * 22 21 19 39 39 H 1.09000 * 109.21850 * 176.67765 * 22 21 19 40 40 H 1.08997 * 109.24451 * 185.83707 * 23 22 21 41 41 H 1.08996 * 109.21152 * 66.41016 * 23 22 21 42 42 H 1.08996 * 109.78393 * 297.54175 * 24 23 22 43 43 H 1.09008 * 109.77871 * 176.71748 * 24 23 22 44 44 H 1.09003 * 113.46364 * 321.86519 * 26 9 7 45 45 H 1.09001 * 113.46571 * 92.30228 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 1.3947 5 1 1.5043 2.6199 -0.8028 6 1 3.5964 1.4120 -0.5919 7 6 2.0102 -1.2021 0.0005 8 1 3.0853 -1.2050 0.1043 9 7 1.3319 -2.3844 -0.1304 10 6 -0.0582 -2.7838 -0.3971 11 6 0.4921 -4.0851 -1.0038 12 7 0.8295 -3.9987 -2.4269 13 6 0.0965 -4.6724 -3.3353 14 8 -0.8426 -5.3498 -2.9748 15 6 0.4440 -4.5841 -4.7991 16 1 1.0049 -3.6706 -4.9970 17 6 1.2695 -5.8218 -5.2269 18 6 0.3721 -6.5686 -6.2514 19 6 -1.0312 -6.0506 -5.8885 20 1 -1.4296 -6.5565 -5.0090 21 6 -2.0166 -6.1187 -7.0487 22 6 -3.3243 -5.4577 -6.5869 23 6 -3.0664 -4.0280 -6.1129 24 6 -1.9668 -4.0030 -5.0401 25 7 -0.7743 -4.6133 -5.6091 26 6 1.6715 -3.8136 -0.0597 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6457 -2.9412 0.5073 29 1 -0.5621 -2.1443 -1.1218 30 1 -0.0871 -4.9733 -0.7516 31 1 1.5806 -3.4568 -2.7151 32 1 2.2026 -5.5108 -5.6966 33 1 1.4718 -6.4584 -4.3656 34 1 0.4367 -7.6476 -6.1112 35 1 0.6358 -6.2946 -7.2728 36 1 -2.2022 -7.1591 -7.3157 37 1 -1.6147 -5.5825 -7.9084 38 1 -3.7497 -6.0369 -5.7673 39 1 -4.0297 -5.4390 -7.4176 40 1 -3.9852 -3.6168 -5.6949 41 1 -2.7541 -3.4196 -6.9616 42 1 -2.2903 -4.5695 -4.1669 43 1 -1.7535 -2.9729 -4.7543 44 1 2.6412 -4.0514 -0.4970 45 1 1.5399 -4.2424 0.9337 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030516595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:47 Heat of formation + Delta-G solvation = 24.833072 kcal Electronic energy + Delta-G solvation = -24745.074612 eV Core-core repulsion = 21377.976766 eV Total energy + Delta-G solvation = -3367.097845 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.77194 -38.84577 -37.33423 -34.92893 -33.28395 -32.22769 -31.86443 -29.35009 -28.03135 -27.19335 -24.65086 -23.73843 -22.98682 -22.16080 -21.21743 -20.24309 -19.55499 -19.25805 -17.03576 -16.69782 -16.06035 -15.53164 -15.18752 -14.97033 -14.60579 -14.34300 -14.17107 -13.77476 -13.66705 -13.16366 -13.14130 -12.80049 -12.57276 -12.49146 -12.27091 -11.67513 -11.61311 -11.36732 -11.34967 -10.99394 -10.89752 -10.82458 -10.66000 -10.63454 -10.37815 -10.26805 -10.21073 -9.98692 -9.87253 -9.44297 -8.87314 -8.38355 -8.06100 -6.95801 -5.83344 -3.15814 2.86852 3.35015 3.40086 3.42640 3.56542 3.96866 4.40831 4.47217 4.61133 4.90084 4.92456 4.99573 5.05630 5.16201 5.21193 5.36636 5.41874 5.44559 5.49300 5.50683 5.62290 5.74148 5.75629 5.81068 5.84471 5.91302 6.00809 6.02966 6.07242 6.12022 6.18286 6.21003 6.25664 6.36404 6.45154 6.50571 6.80021 6.98266 7.14486 7.20832 7.28979 7.49634 7.89824 8.00397 8.59713 8.97168 9.64298 10.57806 11.34673 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.003979 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.569514 B = 7035.906596 C = 7458.682391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.004 4.004 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.224 4.224 8 H 0.081 0.919 9 N -0.607 5.607 10 C 0.150 3.850 11 C 0.082 3.918 12 N -0.686 5.686 13 C 0.491 3.509 14 O -0.551 6.551 15 C 0.061 3.939 16 H 0.103 0.897 17 C -0.112 4.112 18 C -0.113 4.113 19 C 0.061 3.939 20 H 0.070 0.930 21 C -0.103 4.103 22 C -0.119 4.119 23 C -0.111 4.111 24 C 0.042 3.958 25 N -0.508 5.508 26 C 0.108 3.892 27 H 0.254 0.746 28 H 0.037 0.963 29 H 0.063 0.937 30 H 0.094 0.906 31 H 0.404 0.596 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.043 0.957 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.237 -12.828 -14.056 19.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.334 5.334 10 C 0.023 3.977 11 C -0.025 4.025 12 N -0.335 5.335 13 C 0.276 3.724 14 O -0.429 6.429 15 C -0.051 4.051 16 H 0.121 0.879 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.047 4.047 20 H 0.088 0.912 21 C -0.141 4.141 22 C -0.157 4.157 23 C -0.149 4.149 24 C -0.086 4.086 25 N -0.232 5.232 26 C -0.019 4.019 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.239 0.761 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.061 0.939 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.788 -12.610 -14.194 19.070 hybrid contribution 0.596 1.094 1.078 1.648 sum -1.192 -11.516 -13.115 17.494 Atomic orbital electron populations 1.69859 1.05095 1.25491 1.55801 1.24835 0.95613 0.97656 1.02068 0.86122 0.78703 0.83479 0.77555 1.21594 1.21583 1.20469 1.18937 0.90346 0.81528 1.44333 0.90088 1.45837 1.05446 0.99173 1.82939 1.22466 0.88665 0.89886 0.96664 1.22647 0.99267 1.00149 0.80425 1.45624 1.32953 1.48444 1.06447 1.21556 0.82839 0.79318 0.88732 1.90605 1.29146 1.41795 1.81403 1.22315 0.93633 1.01062 0.88097 0.87920 1.22538 0.98294 0.94845 0.99332 1.22348 0.94191 0.99245 0.99275 1.22692 0.95138 0.88743 0.98123 0.91159 1.21501 0.94832 1.00063 0.97715 1.21562 0.97223 0.96396 1.00527 1.21553 0.97747 0.96793 0.98776 1.22225 0.89484 0.99793 0.97070 1.63204 1.03184 1.14239 1.42582 1.22768 0.95778 0.87387 0.95989 0.93574 0.94524 0.91886 0.88798 0.76083 0.90155 0.91043 0.91116 0.90564 0.91863 0.91093 0.92349 0.92209 0.91783 0.91647 0.91546 0.91124 0.93859 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.21 11.81 55.49 0.66 -26.56 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 21.82 29.56 -169.99 -5.02 16.79 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.22 -6.14 10.73 -15.06 -0.16 -6.30 16 8 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 9 N -0.61 -15.16 3.76 -184.62 -0.70 -15.86 16 10 C 0.15 3.57 7.06 -8.37 -0.06 3.51 16 11 C 0.08 1.58 4.61 -67.67 -0.31 1.26 16 12 N -0.69 -11.83 5.40 -53.48 -0.29 -12.12 16 13 C 0.49 8.10 5.92 -10.98 -0.07 8.03 16 14 O -0.55 -10.53 12.86 5.56 0.07 -10.46 16 15 C 0.06 0.82 3.61 -68.22 -0.25 0.57 16 16 H 0.10 1.31 8.11 -51.93 -0.42 0.89 16 17 C -0.11 -1.21 6.62 -24.54 -0.16 -1.37 16 18 C -0.11 -1.12 6.61 -25.01 -0.17 -1.29 16 19 C 0.06 0.73 2.34 -66.58 -0.16 0.57 16 20 H 0.07 1.02 7.08 -51.93 -0.37 0.65 16 21 C -0.10 -1.05 5.68 -26.72 -0.15 -1.20 16 22 C -0.12 -1.26 5.94 -26.49 -0.16 -1.41 16 23 C -0.11 -1.32 6.06 -26.49 -0.16 -1.48 16 24 C 0.04 0.61 4.88 -4.23 -0.02 0.59 16 25 N -0.51 -6.84 4.60 -218.51 -1.01 -7.84 16 26 C 0.11 2.15 8.44 -8.51 -0.07 2.08 16 27 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.68 7.58 -51.93 -0.39 1.28 16 30 H 0.09 1.78 7.45 -51.93 -0.39 1.39 16 31 H 0.40 6.69 8.74 -40.82 -0.36 6.33 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.82 7.71 -51.93 -0.40 0.41 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.07 1.14 5.77 -51.93 -0.30 0.84 16 43 H 0.07 1.12 8.14 -51.92 -0.42 0.69 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -31.30 347.70 -10.70 -42.00 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.67 Total: 5.44 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -1.99 Total: 3.36 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -1.33 Total: -62.38 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.30 -10.70 -42.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030516595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.830 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds