Wall clock time and date at job start Tue Mar 31 2020 07:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 120.00053 * 2 1 4 4 H 1.48497 * 109.47366 * 85.00914 * 3 2 1 5 5 H 1.48500 * 109.47209 * 325.00996 * 3 2 1 6 6 H 1.48498 * 109.47071 * 205.01078 * 3 2 1 7 7 C 1.38811 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00097 * 186.36800 * 7 2 1 9 9 N 1.36933 * 119.99805 * 6.36555 * 7 2 1 10 10 C 1.47068 * 136.05971 * 6.16737 * 9 7 2 11 11 C 1.53757 * 87.88851 * 152.96600 * 10 9 7 12 12 N 1.46505 * 114.56982 * 272.66450 * 11 10 9 13 13 C 1.34775 * 119.99803 * 248.66945 * 12 11 10 14 14 O 1.21278 * 119.99965 * 0.02562 * 13 12 11 15 15 C 1.50703 * 119.99913 * 180.02562 * 13 12 11 16 16 H 1.09002 * 110.13013 * 336.98910 * 15 13 12 17 17 C 1.54804 * 110.15308 * 98.75321 * 15 13 12 18 18 C 1.55330 * 104.99090 * 115.48015 * 17 15 13 19 19 C 1.53929 * 102.08359 * 337.80211 * 18 17 15 20 20 H 1.08997 * 111.54403 * 281.07697 * 19 18 17 21 21 C 1.52371 * 113.26171 * 155.07114 * 19 18 17 22 22 C 1.53632 * 107.59784 * 185.06900 * 21 19 18 23 23 C 1.52823 * 110.61345 * 56.41051 * 22 21 19 24 24 C 1.53642 * 110.64326 * 306.13327 * 23 22 21 25 25 N 1.45540 * 107.85739 * 57.13424 * 24 23 22 26 26 C 1.47070 * 136.05743 * 186.54005 * 9 7 2 27 27 H 0.97005 * 119.99996 * 0.02562 * 1 2 3 28 28 H 1.08995 * 113.46693 * 267.69694 * 10 9 7 29 29 H 1.08999 * 113.46382 * 38.13533 * 10 9 7 30 30 H 1.08997 * 114.09075 * 139.78556 * 11 10 9 31 31 H 0.96999 * 119.99779 * 68.67943 * 12 11 10 32 32 H 1.08994 * 110.33519 * 234.36269 * 17 15 13 33 33 H 1.09002 * 110.33524 * 356.59892 * 17 15 13 34 34 H 1.08999 * 110.90587 * 219.60798 * 18 17 15 35 35 H 1.08993 * 110.93799 * 96.01698 * 18 17 15 36 36 H 1.09003 * 109.83343 * 65.54505 * 21 19 18 37 37 H 1.08992 * 109.89009 * 304.62684 * 21 19 18 38 38 H 1.09000 * 109.24886 * 296.11561 * 22 21 19 39 39 H 1.09000 * 109.21850 * 176.67765 * 22 21 19 40 40 H 1.08997 * 109.24451 * 185.83707 * 23 22 21 41 41 H 1.08996 * 109.21152 * 66.41016 * 23 22 21 42 42 H 1.08996 * 109.78393 * 297.54175 * 24 23 22 43 43 H 1.09008 * 109.77871 * 176.71748 * 24 23 22 44 44 H 1.09003 * 113.46364 * 321.86519 * 26 9 7 45 45 H 1.09001 * 113.46571 * 92.30228 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3922 2.1073 1.3947 5 1 1.5043 2.6199 -0.8028 6 1 3.5964 1.4120 -0.5919 7 6 2.0102 -1.2021 0.0005 8 1 3.0853 -1.2050 0.1043 9 7 1.3319 -2.3844 -0.1304 10 6 -0.0582 -2.7838 -0.3971 11 6 0.4921 -4.0851 -1.0038 12 7 0.8295 -3.9987 -2.4269 13 6 0.0965 -4.6724 -3.3353 14 8 -0.8426 -5.3498 -2.9748 15 6 0.4440 -4.5841 -4.7991 16 1 1.0049 -3.6706 -4.9970 17 6 1.2695 -5.8218 -5.2269 18 6 0.3721 -6.5686 -6.2514 19 6 -1.0312 -6.0506 -5.8885 20 1 -1.4296 -6.5565 -5.0090 21 6 -2.0166 -6.1187 -7.0487 22 6 -3.3243 -5.4577 -6.5869 23 6 -3.0664 -4.0280 -6.1129 24 6 -1.9668 -4.0030 -5.0401 25 7 -0.7743 -4.6133 -5.6091 26 6 1.6715 -3.8136 -0.0597 27 1 -0.4850 0.8401 -0.0004 28 1 -0.6457 -2.9412 0.5073 29 1 -0.5621 -2.1443 -1.1218 30 1 -0.0871 -4.9733 -0.7516 31 1 1.5806 -3.4568 -2.7151 32 1 2.2026 -5.5108 -5.6966 33 1 1.4718 -6.4584 -4.3656 34 1 0.4367 -7.6476 -6.1112 35 1 0.6358 -6.2946 -7.2728 36 1 -2.2022 -7.1591 -7.3157 37 1 -1.6147 -5.5825 -7.9084 38 1 -3.7497 -6.0369 -5.7673 39 1 -4.0297 -5.4390 -7.4176 40 1 -3.9852 -3.6168 -5.6949 41 1 -2.7541 -3.4196 -6.9616 42 1 -2.2903 -4.5695 -4.1669 43 1 -1.7535 -2.9729 -4.7543 44 1 2.6412 -4.0514 -0.4970 45 1 1.5399 -4.2424 0.9337 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030516595.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:46 Heat of formation + Delta-G solvation = 3.172699 kcal Electronic energy + Delta-G solvation = -24746.013876 eV Core-core repulsion = 21377.976766 eV Total energy + Delta-G solvation = -3368.037109 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.95308 -40.34892 -38.80238 -35.90038 -34.97266 -33.78359 -33.17410 -30.39112 -29.64182 -28.49141 -26.45177 -25.40079 -24.11932 -23.43809 -22.14000 -21.34840 -21.03934 -20.62571 -18.80108 -18.19022 -17.31760 -16.94914 -16.49758 -16.46456 -15.99602 -15.72231 -15.45261 -15.21063 -14.87503 -14.61060 -14.47234 -14.06629 -13.92197 -13.56494 -13.37629 -13.27163 -13.17333 -12.80780 -12.63121 -12.44985 -12.29931 -12.18522 -11.91616 -11.83519 -11.73023 -11.56692 -11.32770 -11.25590 -11.23222 -11.14823 -10.92044 -9.93719 -9.27408 -8.99129 -7.95408 -5.29110 1.44948 1.46221 1.53636 1.55877 2.19386 2.44691 2.91267 3.27060 3.40551 3.52679 3.70310 3.73609 3.78037 4.02359 4.07567 4.12177 4.22943 4.41137 4.44228 4.47867 4.49851 4.57314 4.65605 4.74794 4.77010 4.83512 4.88036 4.95605 4.97775 5.06735 5.06783 5.07745 5.14853 5.15972 5.21201 5.28873 5.34561 5.41956 5.52235 5.67122 5.84294 5.97337 6.09633 6.60626 6.84578 7.22811 7.55925 8.55190 9.23228 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.003979 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.569514 B = 7035.906596 C = 7458.682391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.289 1.289 5 H -0.297 1.297 6 H -0.260 1.260 7 C -0.228 4.228 8 H 0.093 0.907 9 N -0.631 5.631 10 C 0.146 3.854 11 C 0.109 3.891 12 N -0.686 5.686 13 C 0.490 3.510 14 O -0.578 6.578 15 C 0.059 3.941 16 H 0.111 0.889 17 C -0.107 4.107 18 C -0.105 4.105 19 C 0.057 3.943 20 H 0.041 0.959 21 C -0.098 4.098 22 C -0.119 4.119 23 C -0.107 4.107 24 C 0.045 3.955 25 N -0.505 5.505 26 C 0.116 3.884 27 H 0.247 0.753 28 H 0.021 0.979 29 H 0.024 0.976 30 H 0.101 0.899 31 H 0.409 0.591 32 H 0.106 0.894 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.046 0.954 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -14.039 -16.104 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.260 4.260 3 Si 0.808 3.192 4 H -0.216 1.216 5 H -0.224 1.224 6 H -0.185 1.185 7 C -0.356 4.356 8 H 0.110 0.890 9 N -0.357 5.357 10 C 0.019 3.981 11 C 0.001 3.999 12 N -0.335 5.335 13 C 0.277 3.723 14 O -0.458 6.458 15 C -0.054 4.054 16 H 0.129 0.871 17 C -0.145 4.145 18 C -0.143 4.143 19 C -0.051 4.051 20 H 0.059 0.941 21 C -0.136 4.136 22 C -0.156 4.156 23 C -0.145 4.145 24 C -0.084 4.084 25 N -0.229 5.229 26 C -0.009 4.009 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.245 0.755 32 H 0.125 0.875 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.100 0.900 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.092 -13.861 -16.257 21.364 hybrid contribution -0.018 1.414 1.747 2.247 sum 0.073 -12.447 -14.510 19.117 Atomic orbital electron populations 1.70063 1.06837 1.25666 1.57916 1.25697 0.96368 1.01178 1.02708 0.85042 0.78051 0.78923 0.77194 1.21618 1.22431 1.18461 1.19396 0.91122 0.82586 1.42512 0.88965 1.46088 1.05896 1.00699 1.83055 1.22420 0.88345 0.91760 0.95589 1.22271 0.98359 0.97615 0.81620 1.45636 1.33338 1.48863 1.05690 1.22249 0.81906 0.78201 0.89942 1.90601 1.30210 1.42921 1.82075 1.22522 0.94308 1.03012 0.85517 0.87106 1.22589 0.99035 0.93371 0.99524 1.22385 0.92097 0.99996 0.99849 1.22779 0.97067 0.87390 0.97829 0.94137 1.21509 0.93776 1.01369 0.96932 1.21572 0.98174 0.95011 1.00875 1.21540 0.96705 0.98261 0.97996 1.22115 0.91106 0.98003 0.97136 1.63317 1.02630 1.15351 1.41607 1.22861 0.96995 0.84258 0.96825 0.94413 0.96128 0.95735 0.88098 0.75521 0.87508 0.91686 0.89627 0.88755 0.89875 0.90227 0.93484 0.90018 0.91678 0.90880 0.94680 0.93346 0.91413 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.78 11.81 21.65 0.26 -58.52 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 3 Si 0.98 45.24 29.56 68.60 2.03 47.26 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.23 -12.47 10.73 84.03 0.90 -11.56 16 8 H 0.09 4.71 7.84 -2.91 -0.02 4.69 16 9 N -0.63 -31.62 3.76 -738.01 -2.78 -34.40 16 10 C 0.15 7.22 7.06 83.27 0.59 7.81 16 11 C 0.11 4.20 4.61 45.55 0.21 4.41 16 12 N -0.69 -23.59 5.40 -441.52 -2.39 -25.98 16 13 C 0.49 16.26 5.92 87.66 0.52 16.78 16 14 O -0.58 -22.66 12.86 -3.02 -0.04 -22.70 16 15 C 0.06 1.51 3.61 44.89 0.16 1.68 16 16 H 0.11 2.68 8.11 -2.39 -0.02 2.66 16 17 C -0.11 -2.04 6.62 32.01 0.21 -1.82 16 18 C -0.11 -1.79 6.61 31.71 0.21 -1.58 16 19 C 0.06 1.29 2.34 44.68 0.10 1.39 16 20 H 0.04 1.17 7.08 -2.39 -0.02 1.16 16 21 C -0.10 -1.75 5.68 30.60 0.17 -1.58 16 22 C -0.12 -2.33 5.94 30.75 0.18 -2.15 16 23 C -0.11 -2.51 6.06 30.75 0.19 -2.33 16 24 C 0.04 1.35 4.88 86.78 0.42 1.78 16 25 N -0.51 -13.25 4.60 -845.24 -3.89 -17.14 16 26 C 0.12 4.48 8.44 83.17 0.70 5.18 16 27 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 28 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.02 1.37 7.58 -2.39 -0.02 1.35 16 30 H 0.10 3.81 7.45 -2.39 -0.02 3.79 16 31 H 0.41 13.28 8.74 -92.71 -0.81 12.47 16 32 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.06 1.34 7.71 -2.39 -0.02 1.32 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.31 8.10 -2.39 -0.02 1.29 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.01 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.04 1.28 5.77 -2.39 -0.01 1.27 16 43 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -69.76 347.70 -1.61 -71.37 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.16 Total: 25.39 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 5.04 Total: 14.71 kcal Atomic # 7 Polarization: -127.24 SS G_CDS: -8.80 Total: -136.04 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: -0.04 Total: -22.70 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -69.76 -1.61 -71.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030516595.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.543 kcal (2) G-P(sol) polarization free energy of solvation -69.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds