Wall clock time and date at job start Tue Mar 31 2020 07:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00337 * 2 1 4 4 H 1.48502 * 109.46876 * 269.99993 * 3 2 1 5 5 H 1.48505 * 109.47218 * 29.99373 * 3 2 1 6 6 H 1.48491 * 109.47260 * 149.99825 * 3 2 1 7 7 C 1.38817 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99267 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49447 * 179.97438 * 9 7 2 11 11 C 1.53936 * 86.12077 * 155.35479 * 10 9 7 12 12 N 1.46504 * 113.74562 * 137.95247 * 11 10 9 13 13 C 1.34770 * 119.99999 * 154.99831 * 12 11 10 14 14 O 1.21284 * 120.00422 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99798 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.77570 * 60.00207 * 15 13 12 17 17 C 1.53632 * 109.78044 * 299.23781 * 15 13 12 18 18 C 1.52824 * 110.65025 * 183.22355 * 17 15 13 19 19 C 1.53639 * 110.60725 * 53.86313 * 18 17 15 20 20 C 1.52365 * 107.60063 * 303.59211 * 19 18 17 21 21 H 1.08992 * 110.93072 * 301.26686 * 20 19 18 22 22 C 1.53925 * 113.27149 * 174.93503 * 20 19 18 23 23 C 1.55326 * 102.08437 * 204.91775 * 22 20 19 24 24 C 1.54798 * 104.99570 * 22.19883 * 23 22 20 25 25 N 1.45531 * 109.82744 * 180.79741 * 15 13 12 26 26 C 1.47584 * 134.49214 * 359.97438 * 9 7 2 27 27 H 0.96999 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.76787 * 41.05312 * 10 9 7 29 29 H 1.08999 * 113.77002 * 269.66169 * 10 9 7 30 30 H 1.09002 * 113.74292 * 269.15713 * 11 10 9 31 31 H 0.96996 * 119.99402 * 335.00223 * 12 11 10 32 32 H 1.08999 * 109.24594 * 303.52414 * 17 15 13 33 33 H 1.08998 * 109.24287 * 62.92258 * 17 15 13 34 34 H 1.08992 * 109.25476 * 174.15846 * 18 17 15 35 35 H 1.09000 * 109.24695 * 293.61846 * 18 17 15 36 36 H 1.09003 * 109.82975 * 63.11655 * 19 18 17 37 37 H 1.08994 * 109.83888 * 184.06504 * 19 18 17 38 38 H 1.09004 * 110.90748 * 323.11064 * 22 20 19 39 39 H 1.09000 * 110.90756 * 86.72169 * 22 20 19 40 40 H 1.09010 * 110.33467 * 263.31932 * 23 22 20 41 41 H 1.09002 * 110.43078 * 141.12575 * 23 22 20 42 42 H 1.09002 * 110.15482 * 244.52766 * 24 23 22 43 43 H 1.08990 * 110.21434 * 122.80048 * 24 23 22 44 44 H 1.09000 * 113.76406 * 90.34581 * 26 9 7 45 45 H 1.09002 * 113.76960 * 318.94835 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7199 -3.8102 0.0005 11 6 0.3469 -4.0829 0.6410 12 7 -0.3336 -5.2613 0.0982 13 6 -1.2455 -5.9160 0.8440 14 8 -1.5031 -5.5294 1.9643 15 6 -1.9450 -7.1285 0.2858 16 1 -1.2118 -7.8963 0.0389 17 6 -2.7346 -6.7395 -0.9734 18 6 -3.5164 -7.9376 -1.5109 19 6 -4.3988 -8.5455 -0.4098 20 6 -3.4918 -8.9092 0.7591 21 1 -2.7209 -9.6146 0.4490 22 6 -4.2618 -9.4188 1.9907 23 6 -3.2794 -9.0892 3.1477 24 6 -2.3709 -7.9649 2.5938 25 7 -2.8905 -7.6465 1.2633 26 6 -0.1034 -2.7573 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 2.5622 -4.0324 0.6557 29 1 1.8316 -4.2351 -0.9970 30 1 0.3594 -4.0638 1.7308 31 1 -0.1278 -5.5702 -0.7979 32 1 -3.4306 -5.9375 -0.7276 33 1 -2.0413 -6.3905 -1.7386 34 1 -4.1470 -7.6132 -2.3386 35 1 -2.8161 -8.6930 -1.8673 36 1 -5.1428 -7.8168 -0.0879 37 1 -4.8949 -9.4404 -0.7854 38 1 -5.2013 -8.8796 2.1126 39 1 -4.4369 -10.4925 1.9230 40 1 -2.6844 -9.9668 3.4011 41 1 -3.8262 -8.7378 4.0227 42 1 -1.3414 -8.3157 2.5207 43 1 -2.4233 -7.0869 3.2374 44 1 -0.5272 -2.8731 -0.9970 45 1 -0.7170 -2.1389 0.6557 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031082821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:17 Heat of formation + Delta-G solvation = 23.626626 kcal Electronic energy + Delta-G solvation = -24283.371375 eV Core-core repulsion = 20916.221215 eV Total energy + Delta-G solvation = -3367.150161 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59483 -38.90570 -37.34251 -35.19600 -33.41674 -32.43220 -31.71387 -29.38575 -27.90552 -27.05759 -24.81526 -24.42444 -22.75813 -21.74256 -21.16990 -20.27043 -19.82537 -19.44528 -16.80916 -16.64461 -16.29989 -15.71595 -15.34760 -14.98915 -14.91164 -14.59533 -14.06927 -13.81097 -13.65446 -13.39074 -12.98503 -12.84902 -12.60295 -12.37182 -11.87901 -11.73411 -11.46742 -11.44522 -11.30667 -11.19982 -10.99252 -10.89843 -10.88861 -10.75180 -10.65437 -10.54364 -10.41021 -10.03136 -9.54867 -9.23624 -8.80744 -8.42509 -8.27503 -6.91953 -5.77164 -3.11357 2.93239 3.34221 3.40412 3.44780 3.46782 3.92827 4.39255 4.45089 4.52297 4.71183 4.80089 4.87121 4.97886 5.07868 5.11613 5.15569 5.18041 5.27636 5.42963 5.48272 5.56578 5.59558 5.65237 5.70693 5.73957 5.78661 5.82593 5.96709 6.01018 6.02471 6.06788 6.19227 6.22729 6.29171 6.42187 6.56047 6.79648 6.93794 7.12136 7.24507 7.38783 7.57334 7.92208 7.97081 8.60878 9.02966 9.69078 10.55917 11.39414 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031663 B = 0.003181 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.089369 B = 8799.527652 C = 9091.071448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.226 4.226 8 H 0.081 0.919 9 N -0.607 5.607 10 C 0.112 3.888 11 C 0.093 3.907 12 N -0.715 5.715 13 C 0.515 3.485 14 O -0.528 6.528 15 C 0.075 3.925 16 H 0.060 0.940 17 C -0.107 4.107 18 C -0.118 4.118 19 C -0.107 4.107 20 C 0.065 3.935 21 H 0.052 0.948 22 C -0.113 4.113 23 C -0.130 4.130 24 C 0.057 3.943 25 N -0.514 5.514 26 C 0.155 3.845 27 H 0.255 0.745 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.110 0.890 31 H 0.395 0.605 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.031 0.969 43 H 0.096 0.904 44 H 0.028 0.972 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.726 -21.799 -1.173 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.015 4.015 11 C -0.012 4.012 12 N -0.366 5.366 13 C 0.300 3.700 14 O -0.404 6.404 15 C -0.038 4.038 16 H 0.078 0.922 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.145 4.145 20 C -0.043 4.043 21 H 0.070 0.930 22 C -0.151 4.151 23 C -0.168 4.168 24 C -0.071 4.071 25 N -0.240 5.240 26 C 0.029 3.971 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.128 0.872 31 H 0.228 0.772 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.115 0.885 44 H 0.046 0.954 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.186 -20.719 -0.270 22.279 hybrid contribution 1.342 0.236 -0.771 1.566 sum -6.844 -20.483 -1.041 21.621 Atomic orbital electron populations 1.69833 1.05038 1.25491 1.56043 1.24825 0.95699 0.97640 1.02142 0.86092 0.78629 0.83296 0.77551 1.21582 1.21544 1.20552 1.18979 0.90238 0.81634 1.44547 0.90084 1.45672 1.02482 0.99141 1.86031 1.22879 0.94752 0.86911 0.97006 1.23874 0.93213 0.84213 0.99862 1.46128 1.41582 1.30628 1.18307 1.20343 0.79490 0.84310 0.85900 1.90673 1.63192 1.67181 1.19313 1.21509 0.93659 0.95232 0.93357 0.92226 1.21585 0.99414 0.99092 0.94401 1.21566 0.98608 0.97277 0.98067 1.21548 0.97862 1.00671 0.94389 1.22628 0.96398 0.90247 0.95038 0.93050 1.22336 0.98761 1.00217 0.93809 1.22683 0.97615 0.97983 0.98566 1.22546 0.95511 0.98633 0.90370 1.62567 1.32913 1.26990 1.01538 1.22663 0.88112 0.89221 0.97152 0.93521 0.93356 0.94803 0.87209 0.77176 0.90291 0.90964 0.91358 0.92341 0.90570 0.91620 0.90470 0.91325 0.91869 0.90984 0.95095 0.88543 0.95437 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.71 11.38 55.49 0.63 -27.08 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.42 10.70 -15.06 -0.16 -6.59 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.61 -15.74 3.70 -178.10 -0.66 -16.40 16 10 C 0.11 2.25 8.69 -2.98 -0.03 2.23 16 11 C 0.09 1.84 4.43 -70.15 -0.31 1.53 16 12 N -0.72 -11.17 5.28 -55.34 -0.29 -11.46 16 13 C 0.51 8.31 7.01 -10.99 -0.08 8.23 16 14 O -0.53 -10.58 13.81 5.55 0.08 -10.50 16 15 C 0.07 0.93 2.40 -69.27 -0.17 0.76 16 16 H 0.06 0.66 8.04 -51.93 -0.42 0.24 16 17 C -0.11 -1.14 5.26 -26.49 -0.14 -1.28 16 18 C -0.12 -0.99 5.94 -26.49 -0.16 -1.15 16 19 C -0.11 -0.92 5.68 -26.72 -0.15 -1.07 16 20 C 0.06 0.62 2.63 -66.58 -0.18 0.45 16 21 H 0.05 0.48 8.05 -51.93 -0.42 0.06 16 22 C -0.11 -0.98 6.61 -25.02 -0.17 -1.14 16 23 C -0.13 -1.25 6.98 -24.55 -0.17 -1.42 16 24 C 0.06 0.72 5.53 -3.18 -0.02 0.71 16 25 N -0.51 -6.48 4.30 -218.47 -0.94 -7.42 16 26 C 0.15 3.76 7.32 -2.97 -0.02 3.73 16 27 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.11 2.38 7.46 -51.93 -0.39 1.99 16 31 H 0.39 5.00 8.28 -40.82 -0.34 4.66 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 0.69 7.72 -51.93 -0.40 0.28 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.03 0.40 8.04 -51.93 -0.42 -0.02 16 43 H 0.10 1.49 6.86 -51.93 -0.36 1.13 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.08 2.12 7.15 -51.93 -0.37 1.75 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -32.94 349.41 -10.50 -43.44 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.72 Total: 2.13 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.84 Total: 4.71 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: -1.26 Total: -62.35 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.94 -10.50 -43.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031082821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.067 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds