Wall clock time and date at job start Tue Mar 31 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00337 * 2 1 4 4 H 1.48502 * 109.46876 * 269.99993 * 3 2 1 5 5 H 1.48505 * 109.47218 * 29.99373 * 3 2 1 6 6 H 1.48491 * 109.47260 * 149.99825 * 3 2 1 7 7 C 1.38817 * 119.99548 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99267 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.47576 * 134.49447 * 179.97438 * 9 7 2 11 11 C 1.53936 * 86.12077 * 155.35479 * 10 9 7 12 12 N 1.46504 * 113.74562 * 137.95247 * 11 10 9 13 13 C 1.34770 * 119.99999 * 154.99831 * 12 11 10 14 14 O 1.21284 * 120.00422 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99798 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.77570 * 60.00207 * 15 13 12 17 17 C 1.53632 * 109.78044 * 299.23781 * 15 13 12 18 18 C 1.52824 * 110.65025 * 183.22355 * 17 15 13 19 19 C 1.53639 * 110.60725 * 53.86313 * 18 17 15 20 20 C 1.52365 * 107.60063 * 303.59211 * 19 18 17 21 21 H 1.08992 * 110.93072 * 301.26686 * 20 19 18 22 22 C 1.53925 * 113.27149 * 174.93503 * 20 19 18 23 23 C 1.55326 * 102.08437 * 204.91775 * 22 20 19 24 24 C 1.54798 * 104.99570 * 22.19883 * 23 22 20 25 25 N 1.45531 * 109.82744 * 180.79741 * 15 13 12 26 26 C 1.47584 * 134.49214 * 359.97438 * 9 7 2 27 27 H 0.96999 * 119.99803 * 0.02562 * 1 2 3 28 28 H 1.09002 * 113.76787 * 41.05312 * 10 9 7 29 29 H 1.08999 * 113.77002 * 269.66169 * 10 9 7 30 30 H 1.09002 * 113.74292 * 269.15713 * 11 10 9 31 31 H 0.96996 * 119.99402 * 335.00223 * 12 11 10 32 32 H 1.08999 * 109.24594 * 303.52414 * 17 15 13 33 33 H 1.08998 * 109.24287 * 62.92258 * 17 15 13 34 34 H 1.08992 * 109.25476 * 174.15846 * 18 17 15 35 35 H 1.09000 * 109.24695 * 293.61846 * 18 17 15 36 36 H 1.09003 * 109.82975 * 63.11655 * 19 18 17 37 37 H 1.08994 * 109.83888 * 184.06504 * 19 18 17 38 38 H 1.09004 * 110.90748 * 323.11064 * 22 20 19 39 39 H 1.09000 * 110.90756 * 86.72169 * 22 20 19 40 40 H 1.09010 * 110.33467 * 263.31932 * 23 22 20 41 41 H 1.09002 * 110.43078 * 141.12575 * 23 22 20 42 42 H 1.09002 * 110.15482 * 244.52766 * 24 23 22 43 43 H 1.08990 * 110.21434 * 122.80048 * 24 23 22 44 44 H 1.09000 * 113.76406 * 90.34581 * 26 9 7 45 45 H 1.09002 * 113.76960 * 318.94835 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 1.7199 -3.8102 0.0005 11 6 0.3469 -4.0829 0.6410 12 7 -0.3336 -5.2613 0.0982 13 6 -1.2455 -5.9160 0.8440 14 8 -1.5031 -5.5294 1.9643 15 6 -1.9450 -7.1285 0.2858 16 1 -1.2118 -7.8963 0.0389 17 6 -2.7346 -6.7395 -0.9734 18 6 -3.5164 -7.9376 -1.5109 19 6 -4.3988 -8.5455 -0.4098 20 6 -3.4918 -8.9092 0.7591 21 1 -2.7209 -9.6146 0.4490 22 6 -4.2618 -9.4188 1.9907 23 6 -3.2794 -9.0892 3.1477 24 6 -2.3709 -7.9649 2.5938 25 7 -2.8905 -7.6465 1.2633 26 6 -0.1034 -2.7573 0.0005 27 1 -0.4850 0.8401 -0.0004 28 1 2.5622 -4.0324 0.6557 29 1 1.8316 -4.2351 -0.9970 30 1 0.3594 -4.0638 1.7308 31 1 -0.1278 -5.5702 -0.7979 32 1 -3.4306 -5.9375 -0.7276 33 1 -2.0413 -6.3905 -1.7386 34 1 -4.1470 -7.6132 -2.3386 35 1 -2.8161 -8.6930 -1.8673 36 1 -5.1428 -7.8168 -0.0879 37 1 -4.8949 -9.4404 -0.7854 38 1 -5.2013 -8.8796 2.1126 39 1 -4.4369 -10.4925 1.9230 40 1 -2.6844 -9.9668 3.4011 41 1 -3.8262 -8.7378 4.0227 42 1 -1.3414 -8.3157 2.5207 43 1 -2.4233 -7.0869 3.2374 44 1 -0.5272 -2.8731 -0.9970 45 1 -0.7170 -2.1389 0.6557 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031082821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:16 Heat of formation + Delta-G solvation = 0.395658 kcal Electronic energy + Delta-G solvation = -24284.378746 eV Core-core repulsion = 20916.221215 eV Total energy + Delta-G solvation = -3368.157531 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.66828 -40.28011 -38.92050 -36.06008 -35.05076 -33.79247 -33.16227 -30.24758 -29.53294 -28.25473 -26.63920 -25.71206 -24.33862 -22.54373 -22.11592 -21.41812 -21.22262 -20.67306 -18.80244 -17.91533 -17.55401 -16.96621 -16.62285 -16.48582 -16.01114 -15.77423 -15.59955 -15.22906 -14.71502 -14.40903 -14.24386 -13.93505 -13.73271 -13.55532 -13.30562 -13.22817 -13.17983 -12.85299 -12.63278 -12.56691 -12.31997 -12.15156 -12.04200 -11.95862 -11.81731 -11.60635 -11.54951 -11.41661 -11.23702 -10.90628 -10.52192 -9.95791 -9.22281 -8.99634 -7.93609 -5.29460 1.44222 1.47195 1.55975 1.62550 2.07810 2.47745 2.98745 3.23706 3.36580 3.58318 3.70127 3.78740 3.85254 4.02177 4.04347 4.12751 4.25478 4.27893 4.33869 4.38073 4.49844 4.51793 4.67853 4.71831 4.75574 4.87691 4.91206 4.97781 5.01543 5.09937 5.11591 5.17566 5.20715 5.23185 5.23808 5.34276 5.36034 5.45859 5.52601 5.69276 5.87568 6.11774 6.17175 6.65078 6.86244 7.31891 7.56182 8.49140 9.23049 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.031663 B = 0.003181 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.089369 B = 8799.527652 C = 9091.071448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.984 3.016 4 H -0.283 1.283 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.237 4.237 8 H 0.091 0.909 9 N -0.638 5.638 10 C 0.122 3.878 11 C 0.122 3.878 12 N -0.702 5.702 13 C 0.510 3.490 14 O -0.572 6.572 15 C 0.083 3.917 16 H 0.085 0.915 17 C -0.105 4.105 18 C -0.113 4.113 19 C -0.106 4.106 20 C 0.066 3.934 21 H 0.065 0.935 22 C -0.109 4.109 23 C -0.125 4.125 24 C 0.057 3.943 25 N -0.538 5.538 26 C 0.154 3.846 27 H 0.248 0.752 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.414 0.586 32 H 0.051 0.949 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.057 0.943 44 H 0.027 0.973 45 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.026 -24.519 -2.734 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.812 3.188 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.365 4.365 8 H 0.109 0.891 9 N -0.366 5.366 10 C -0.003 4.003 11 C 0.015 3.985 12 N -0.354 5.354 13 C 0.297 3.703 14 O -0.451 6.451 15 C -0.029 4.029 16 H 0.102 0.898 17 C -0.143 4.143 18 C -0.150 4.150 19 C -0.143 4.143 20 C -0.041 4.041 21 H 0.083 0.917 22 C -0.146 4.146 23 C -0.163 4.163 24 C -0.071 4.071 25 N -0.264 5.264 26 C 0.027 3.973 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.251 0.749 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.075 0.925 44 H 0.045 0.955 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -7.465 -23.505 -1.868 24.733 hybrid contribution 1.106 1.033 -0.255 1.535 sum -6.359 -22.472 -2.123 23.451 Atomic orbital electron populations 1.70050 1.06702 1.25728 1.57873 1.25743 0.96571 1.01278 1.02668 0.84999 0.77643 0.78590 0.77608 1.20952 1.22292 1.18980 1.19441 0.90994 0.82891 1.43159 0.89149 1.45999 1.03339 1.00853 1.86362 1.23015 0.94926 0.83603 0.98747 1.23110 0.93174 0.83875 0.98326 1.45861 1.41214 1.29154 1.19177 1.21184 0.78807 0.85063 0.85234 1.90671 1.64359 1.68600 1.21443 1.21504 0.94141 0.93552 0.93689 0.89784 1.21622 0.99265 0.99587 0.93866 1.21561 0.98814 0.96536 0.98122 1.21565 0.97408 1.01316 0.94032 1.22770 0.96689 0.88970 0.95687 0.91749 1.22360 0.97897 1.01717 0.92674 1.22660 0.97516 0.97337 0.98836 1.22423 0.96138 0.98118 0.90442 1.62553 1.33123 1.29112 1.01611 1.22537 0.87306 0.91040 0.96435 0.94276 0.91894 0.91460 0.89454 0.74917 0.93021 0.89526 0.90296 0.90380 0.92266 0.89084 0.91134 0.88675 0.90107 0.91200 0.95617 0.92492 0.95534 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.78 11.38 21.65 0.25 -59.54 16 2 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 3 Si 0.98 46.52 29.55 68.60 2.03 48.55 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 7 C -0.24 -13.49 10.70 84.04 0.90 -12.59 16 8 H 0.09 4.83 7.83 -2.91 -0.02 4.81 16 9 N -0.64 -33.37 3.70 -717.38 -2.65 -36.02 16 10 C 0.12 4.76 8.69 86.48 0.75 5.51 16 11 C 0.12 4.85 4.43 46.75 0.21 5.06 16 12 N -0.70 -21.37 5.28 -447.39 -2.36 -23.73 16 13 C 0.51 16.52 7.01 87.66 0.61 17.13 16 14 O -0.57 -24.02 13.81 -3.04 -0.04 -24.07 16 15 C 0.08 1.95 2.40 44.64 0.11 2.05 16 16 H 0.08 1.59 8.04 -2.39 -0.02 1.58 16 17 C -0.11 -2.06 5.26 30.75 0.16 -1.90 16 18 C -0.11 -1.55 5.94 30.75 0.18 -1.36 16 19 C -0.11 -1.51 5.68 30.60 0.17 -1.33 16 20 C 0.07 1.09 2.63 44.68 0.12 1.21 16 21 H 0.06 0.94 8.05 -2.39 -0.02 0.92 16 22 C -0.11 -1.62 6.61 31.71 0.21 -1.41 16 23 C -0.13 -2.26 6.98 32.01 0.22 -2.04 16 24 C 0.06 1.46 5.53 87.02 0.48 1.94 16 25 N -0.54 -13.16 4.30 -845.12 -3.63 -16.79 16 26 C 0.15 7.71 7.32 86.48 0.63 8.34 16 27 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 28 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 30 H 0.09 3.93 7.46 -2.39 -0.02 3.91 16 31 H 0.41 9.52 8.28 -92.71 -0.77 8.75 16 32 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.09 1.42 7.72 -2.39 -0.02 1.40 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 1.15 8.10 -2.38 -0.02 1.13 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.08 1.17 8.14 -2.38 -0.02 1.16 16 41 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.03 0.66 8.04 -2.39 -0.02 0.64 16 43 H 0.06 1.89 6.86 -2.39 -0.02 1.88 16 44 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.03 1.76 7.15 -2.39 -0.02 1.74 16 Total: -1.00 -75.26 349.41 -0.99 -76.25 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.20 Total: 18.34 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 5.23 Total: 17.01 kcal Atomic # 7 Polarization: -127.68 SS G_CDS: -8.40 Total: -136.08 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.04 Total: -24.07 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -75.26 -0.99 -76.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031082821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.647 kcal (2) G-P(sol) polarization free energy of solvation -75.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds