Wall clock time and date at job start Tue Mar 31 2020 07:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99732 * 2 1 4 4 H 1.48495 * 109.47084 * 240.00081 * 3 2 1 5 5 H 1.48499 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46974 * 120.00047 * 3 2 1 7 7 C 1.38809 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49199 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11837 * 155.36764 * 10 9 7 12 12 N 1.46494 * 113.74435 * 137.95619 * 11 10 9 13 13 C 1.34777 * 120.00119 * 155.00328 * 12 11 10 14 14 O 1.21275 * 120.00100 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00051 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.78734 * 68.36006 * 15 13 12 17 17 C 1.53625 * 109.84447 * 307.53604 * 15 13 12 18 18 C 1.52826 * 110.69744 * 297.77159 * 17 15 13 19 19 C 1.52315 * 110.74404 * 306.55573 * 18 17 15 20 20 C 1.52252 * 108.26763 * 55.64479 * 19 18 17 21 21 H 1.09002 * 110.26524 * 57.98739 * 20 19 18 22 22 C 1.53254 * 114.44509 * 183.01536 * 20 19 18 23 23 C 1.54992 * 104.18723 * 144.69648 * 22 20 19 24 24 C 1.55195 * 104.93043 * 357.50322 * 23 22 20 25 25 N 1.45668 * 109.79677 * 189.15395 * 15 13 12 26 26 C 1.47582 * 134.49540 * 0.02562 * 9 7 2 27 27 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.76906 * 41.06799 * 10 9 7 29 29 H 1.09000 * 113.87543 * 269.68291 * 10 9 7 30 30 H 1.09000 * 113.74355 * 269.16045 * 11 10 9 31 31 H 0.97005 * 120.00183 * 334.99695 * 12 11 10 32 32 H 1.09005 * 109.23287 * 58.08008 * 17 15 13 33 33 H 1.09001 * 109.23836 * 177.45461 * 17 15 13 34 34 H 1.09007 * 109.24751 * 66.54436 * 18 17 15 35 35 H 1.09006 * 109.24819 * 185.99080 * 18 17 15 36 36 H 1.08997 * 109.03175 * 296.17936 * 19 18 17 37 37 H 1.09010 * 109.95740 * 175.65024 * 19 18 17 38 38 H 1.09007 * 110.48703 * 263.36675 * 22 20 19 39 39 H 1.08994 * 110.49493 * 26.01889 * 22 20 19 40 40 H 1.09002 * 110.34933 * 238.64186 * 23 22 20 41 41 H 1.09000 * 110.35316 * 116.36808 * 23 22 20 42 42 H 1.09001 * 110.61154 * 217.49519 * 24 23 22 43 43 H 1.08997 * 110.74265 * 94.57924 * 24 23 22 44 44 H 1.09001 * 113.76952 * 90.33014 * 26 9 7 45 45 H 1.09001 * 113.76342 * 318.93591 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7202 -3.8101 -0.0015 11 6 0.3476 -4.0833 0.6396 12 7 -0.3331 -5.2614 0.0967 13 6 -1.2446 -5.9165 0.8427 14 8 -1.5010 -5.5310 1.9635 15 6 -1.9451 -7.1282 0.2839 16 1 -1.2345 -7.9474 0.1742 17 6 -2.5636 -6.7898 -1.0810 18 6 -3.6191 -5.6937 -0.9389 19 6 -4.6524 -6.0730 0.1139 20 6 -3.9210 -6.3657 1.4167 21 1 -3.3397 -5.4973 1.7267 22 6 -4.8264 -6.8351 2.5607 23 6 -3.9613 -7.8640 3.3321 24 6 -2.6369 -7.9554 2.5283 25 7 -3.0254 -7.5283 1.1755 26 6 -0.1032 -2.7574 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 2.5629 -4.0326 0.6531 29 1 1.8321 -4.2362 -0.9985 30 1 0.3606 -4.0647 1.7294 31 1 -0.1278 -5.5700 -0.7998 32 1 -1.7790 -6.4473 -1.7557 33 1 -3.0283 -7.6840 -1.4964 34 1 -3.1341 -4.7644 -0.6399 35 1 -4.1162 -5.5471 -1.8979 36 1 -5.1877 -6.9627 -0.2178 37 1 -5.3537 -5.2514 0.2598 38 1 -5.0900 -5.9977 3.2068 39 1 -5.7240 -7.3111 2.1661 40 1 -4.4576 -8.8342 3.3564 41 1 -3.7663 -7.5117 4.3450 42 1 -2.2658 -8.9803 2.5154 43 1 -1.8865 -7.2821 2.9426 44 1 -0.5271 -2.8730 -0.9981 45 1 -0.7168 -2.1392 0.6548 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031082823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:21 Heat of formation + Delta-G solvation = 29.967799 kcal Electronic energy + Delta-G solvation = -24940.683622 eV Core-core repulsion = 21573.808435 eV Total energy + Delta-G solvation = -3366.875187 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06032 -38.63520 -37.16317 -35.19899 -33.45615 -32.40307 -31.72862 -29.18910 -27.81621 -27.05031 -24.85838 -24.25380 -22.80567 -21.70775 -21.10207 -20.63016 -19.82558 -19.12197 -16.83232 -16.50513 -16.25346 -15.49196 -15.37962 -15.16102 -14.86829 -14.68540 -13.93283 -13.83892 -13.65144 -13.35380 -12.86998 -12.74729 -12.34223 -12.26963 -11.93376 -11.66403 -11.47980 -11.43346 -11.26843 -11.10015 -10.90873 -10.81049 -10.76971 -10.58439 -10.45292 -10.33407 -10.11104 -10.10247 -9.95788 -9.57222 -8.83582 -8.43610 -8.05574 -6.95289 -5.80284 -3.14508 2.81095 3.37444 3.40924 3.43445 3.51754 3.95979 4.43182 4.56976 4.64564 4.81402 4.92571 5.03348 5.05951 5.12246 5.17204 5.30297 5.43790 5.45539 5.55054 5.58519 5.67474 5.75553 5.77860 5.85090 5.93373 5.96523 5.98396 6.02001 6.11014 6.13147 6.18439 6.24499 6.29669 6.37894 6.45267 6.52652 6.74974 6.95722 7.12780 7.19720 7.32997 7.52105 7.84599 7.93690 8.49510 8.99887 9.66135 10.52596 11.36299 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025545 B = 0.003729 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.825695 B = 7506.817543 C = 7596.055244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.285 1.285 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.228 4.228 8 H 0.081 0.919 9 N -0.606 5.606 10 C 0.112 3.888 11 C 0.090 3.910 12 N -0.711 5.711 13 C 0.487 3.513 14 O -0.540 6.540 15 C 0.062 3.938 16 H 0.105 0.895 17 C -0.102 4.102 18 C -0.126 4.126 19 C -0.104 4.104 20 C 0.037 3.963 21 H 0.094 0.906 22 C -0.111 4.111 23 C -0.116 4.116 24 C 0.031 3.969 25 N -0.499 5.499 26 C 0.156 3.844 27 H 0.255 0.745 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.109 0.891 31 H 0.396 0.604 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.027 0.973 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.051 -17.579 -0.187 19.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.355 4.355 8 H 0.099 0.901 9 N -0.333 5.333 10 C -0.015 4.015 11 C -0.016 4.016 12 N -0.361 5.361 13 C 0.272 3.728 14 O -0.419 6.419 15 C -0.051 4.051 16 H 0.123 0.877 17 C -0.140 4.140 18 C -0.163 4.163 19 C -0.142 4.142 20 C -0.070 4.070 21 H 0.112 0.888 22 C -0.149 4.149 23 C -0.154 4.154 24 C -0.097 4.097 25 N -0.222 5.222 26 C 0.030 3.970 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.230 0.770 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.045 0.955 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.421 -17.366 0.357 19.303 hybrid contribution 1.134 1.423 -0.284 1.842 sum -7.287 -15.943 0.073 17.530 Atomic orbital electron populations 1.69817 1.05066 1.25633 1.56002 1.24810 0.95681 0.97631 1.02052 0.86173 0.78482 0.82957 0.77973 1.21115 1.21474 1.20959 1.18940 0.90237 0.81647 1.44701 0.90115 1.45662 1.02424 0.99140 1.86029 1.22872 0.94737 0.86910 0.97015 1.23897 0.93397 0.84435 0.99835 1.46341 1.41179 1.30298 1.18301 1.21817 0.79708 0.85299 0.85979 1.90587 1.63456 1.68240 1.19633 1.21809 0.93647 0.94778 0.94865 0.87700 1.21561 0.98629 0.99911 0.93927 1.21387 0.96907 0.98616 0.99412 1.21247 0.97538 1.01163 0.94217 1.22914 0.94599 0.94867 0.94668 0.88812 1.22051 0.97893 0.98458 0.96502 1.22443 0.95387 0.99128 0.98473 1.23005 0.97844 1.00344 0.88511 1.64305 1.14939 1.30784 1.12166 1.22643 0.88165 0.89142 0.97064 0.93466 0.93373 0.94782 0.87295 0.77033 0.91197 0.90350 0.91751 0.91465 0.91498 0.91672 0.91586 0.91574 0.91671 0.91652 0.91228 0.91180 0.95507 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.46 11.38 55.49 0.63 -26.83 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.23 -6.41 10.70 -15.06 -0.16 -6.57 16 8 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 9 N -0.61 -15.54 3.70 -178.08 -0.66 -16.20 16 10 C 0.11 2.23 8.69 -2.98 -0.03 2.20 16 11 C 0.09 1.73 4.44 -70.14 -0.31 1.42 16 12 N -0.71 -10.66 5.22 -55.33 -0.29 -10.95 16 13 C 0.49 7.37 5.64 -10.99 -0.06 7.31 16 14 O -0.54 -10.07 11.19 5.56 0.06 -10.01 16 15 C 0.06 0.74 3.10 -69.21 -0.21 0.52 16 16 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 17 C -0.10 -1.05 5.43 -26.50 -0.14 -1.19 16 18 C -0.13 -1.46 5.62 -27.17 -0.15 -1.61 16 19 C -0.10 -1.21 5.59 -27.46 -0.15 -1.36 16 20 C 0.04 0.49 2.18 -66.95 -0.15 0.34 16 21 H 0.09 1.57 4.99 -51.93 -0.26 1.31 16 22 C -0.11 -1.28 6.66 -25.55 -0.17 -1.45 16 23 C -0.12 -1.28 7.05 -24.52 -0.17 -1.45 16 24 C 0.03 0.38 6.41 -2.56 -0.02 0.36 16 25 N -0.50 -6.21 4.82 -217.91 -1.05 -7.26 16 26 C 0.16 3.71 7.32 -2.96 -0.02 3.69 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.11 2.32 7.46 -51.93 -0.39 1.93 16 31 H 0.40 4.86 7.71 -40.82 -0.31 4.54 16 32 H 0.07 0.63 7.15 -51.93 -0.37 0.26 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.92 7.62 -51.92 -0.40 0.52 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.69 8.02 -51.93 -0.42 0.27 16 40 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 43 H 0.07 1.05 5.82 -51.93 -0.30 0.74 16 44 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 2.05 7.15 -51.93 -0.37 1.68 16 LS Contribution 341.25 15.07 5.14 5.14 Total: -1.00 -31.89 341.25 -10.47 -42.36 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.44 Total: 4.64 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.85 Total: 1.98 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -1.37 Total: -61.24 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.06 Total: -10.01 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.89 -10.47 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031082823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.323 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds