Wall clock time and date at job start Tue Mar 31 2020 07:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99732 * 2 1 4 4 H 1.48495 * 109.47084 * 240.00081 * 3 2 1 5 5 H 1.48499 * 109.47089 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46974 * 120.00047 * 3 2 1 7 7 C 1.38809 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00007 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.49199 * 179.97438 * 9 7 2 11 11 C 1.53942 * 86.11837 * 155.36764 * 10 9 7 12 12 N 1.46494 * 113.74435 * 137.95619 * 11 10 9 13 13 C 1.34777 * 120.00119 * 155.00328 * 12 11 10 14 14 O 1.21275 * 120.00100 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00051 * 179.97438 * 13 12 11 16 16 H 1.09004 * 109.78734 * 68.36006 * 15 13 12 17 17 C 1.53625 * 109.84447 * 307.53604 * 15 13 12 18 18 C 1.52826 * 110.69744 * 297.77159 * 17 15 13 19 19 C 1.52315 * 110.74404 * 306.55573 * 18 17 15 20 20 C 1.52252 * 108.26763 * 55.64479 * 19 18 17 21 21 H 1.09002 * 110.26524 * 57.98739 * 20 19 18 22 22 C 1.53254 * 114.44509 * 183.01536 * 20 19 18 23 23 C 1.54992 * 104.18723 * 144.69648 * 22 20 19 24 24 C 1.55195 * 104.93043 * 357.50322 * 23 22 20 25 25 N 1.45668 * 109.79677 * 189.15395 * 15 13 12 26 26 C 1.47582 * 134.49540 * 0.02562 * 9 7 2 27 27 H 0.97001 * 120.00110 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.76906 * 41.06799 * 10 9 7 29 29 H 1.09000 * 113.87543 * 269.68291 * 10 9 7 30 30 H 1.09000 * 113.74355 * 269.16045 * 11 10 9 31 31 H 0.97005 * 120.00183 * 334.99695 * 12 11 10 32 32 H 1.09005 * 109.23287 * 58.08008 * 17 15 13 33 33 H 1.09001 * 109.23836 * 177.45461 * 17 15 13 34 34 H 1.09007 * 109.24751 * 66.54436 * 18 17 15 35 35 H 1.09006 * 109.24819 * 185.99080 * 18 17 15 36 36 H 1.08997 * 109.03175 * 296.17936 * 19 18 17 37 37 H 1.09010 * 109.95740 * 175.65024 * 19 18 17 38 38 H 1.09007 * 110.48703 * 263.36675 * 22 20 19 39 39 H 1.08994 * 110.49493 * 26.01889 * 22 20 19 40 40 H 1.09002 * 110.34933 * 238.64186 * 23 22 20 41 41 H 1.09000 * 110.35316 * 116.36808 * 23 22 20 42 42 H 1.09001 * 110.61154 * 217.49519 * 24 23 22 43 43 H 1.08997 * 110.74265 * 94.57924 * 24 23 22 44 44 H 1.09001 * 113.76952 * 90.33014 * 26 9 7 45 45 H 1.09001 * 113.76342 * 318.93591 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7202 -3.8101 -0.0015 11 6 0.3476 -4.0833 0.6396 12 7 -0.3331 -5.2614 0.0967 13 6 -1.2446 -5.9165 0.8427 14 8 -1.5010 -5.5310 1.9635 15 6 -1.9451 -7.1282 0.2839 16 1 -1.2345 -7.9474 0.1742 17 6 -2.5636 -6.7898 -1.0810 18 6 -3.6191 -5.6937 -0.9389 19 6 -4.6524 -6.0730 0.1139 20 6 -3.9210 -6.3657 1.4167 21 1 -3.3397 -5.4973 1.7267 22 6 -4.8264 -6.8351 2.5607 23 6 -3.9613 -7.8640 3.3321 24 6 -2.6369 -7.9554 2.5283 25 7 -3.0254 -7.5283 1.1755 26 6 -0.1032 -2.7574 -0.0005 27 1 -0.4850 0.8400 -0.0004 28 1 2.5629 -4.0326 0.6531 29 1 1.8321 -4.2362 -0.9985 30 1 0.3606 -4.0647 1.7294 31 1 -0.1278 -5.5700 -0.7998 32 1 -1.7790 -6.4473 -1.7557 33 1 -3.0283 -7.6840 -1.4964 34 1 -3.1341 -4.7644 -0.6399 35 1 -4.1162 -5.5471 -1.8979 36 1 -5.1877 -6.9627 -0.2178 37 1 -5.3537 -5.2514 0.2598 38 1 -5.0900 -5.9977 3.2068 39 1 -5.7240 -7.3111 2.1661 40 1 -4.4576 -8.8342 3.3564 41 1 -3.7663 -7.5117 4.3450 42 1 -2.2658 -8.9803 2.5154 43 1 -1.8865 -7.2821 2.9426 44 1 -0.5271 -2.8730 -0.9981 45 1 -0.7168 -2.1392 0.6548 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031082823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:20 Heat of formation + Delta-G solvation = 7.421241 kcal Electronic energy + Delta-G solvation = -24941.661314 eV Core-core repulsion = 21573.808435 eV Total energy + Delta-G solvation = -3367.852879 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.17376 -40.13429 -38.59675 -36.18650 -35.02203 -33.81068 -33.21180 -30.16999 -29.49596 -28.27065 -26.65405 -25.63559 -24.30083 -22.66243 -22.27344 -21.62984 -21.37737 -20.43642 -18.81130 -17.69717 -17.56803 -17.00868 -16.59528 -16.38182 -16.17515 -15.85377 -15.74124 -15.00142 -14.77543 -14.67231 -14.25053 -13.90244 -13.59100 -13.45188 -13.27362 -13.21190 -13.14708 -12.82874 -12.70712 -12.51609 -12.34670 -12.16686 -12.03102 -11.99595 -11.73733 -11.57143 -11.37415 -11.29745 -11.20891 -11.07568 -10.90735 -9.90097 -9.19085 -9.00231 -7.94828 -5.30668 1.43415 1.47565 1.53751 1.59566 2.18489 2.48596 2.98368 3.22960 3.36810 3.63261 3.71277 3.81239 3.82780 3.98497 4.10978 4.15494 4.23599 4.29979 4.39676 4.49050 4.53599 4.62933 4.70728 4.74888 4.82582 4.85992 4.89225 4.98805 5.02105 5.06510 5.08846 5.16605 5.18224 5.21170 5.22599 5.32793 5.38398 5.44009 5.49896 5.69397 5.86473 5.94149 6.13475 6.61961 6.85088 7.29228 7.55146 8.48016 9.21612 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025545 B = 0.003729 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.825695 B = 7506.817543 C = 7596.055244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.067 4.067 3 Si 0.983 3.017 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.090 0.910 9 N -0.638 5.638 10 C 0.121 3.879 11 C 0.120 3.880 12 N -0.699 5.699 13 C 0.484 3.516 14 O -0.577 6.577 15 C 0.066 3.934 16 H 0.133 0.867 17 C -0.098 4.098 18 C -0.127 4.127 19 C -0.101 4.101 20 C 0.034 3.966 21 H 0.052 0.948 22 C -0.112 4.112 23 C -0.114 4.114 24 C 0.028 3.972 25 N -0.489 5.489 26 C 0.157 3.843 27 H 0.249 0.751 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.413 0.587 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.027 0.973 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.039 0.961 44 H 0.025 0.975 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.629 -20.079 -1.518 21.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.260 4.260 3 Si 0.810 3.190 4 H -0.198 1.198 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.367 4.367 8 H 0.108 0.892 9 N -0.365 5.365 10 C -0.004 4.004 11 C 0.013 3.987 12 N -0.352 5.352 13 C 0.272 3.728 14 O -0.458 6.458 15 C -0.047 4.047 16 H 0.151 0.849 17 C -0.135 4.135 18 C -0.165 4.165 19 C -0.138 4.138 20 C -0.074 4.074 21 H 0.070 0.930 22 C -0.150 4.150 23 C -0.152 4.152 24 C -0.100 4.100 25 N -0.211 5.211 26 C 0.030 3.970 27 H 0.057 0.943 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.251 0.749 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.046 0.954 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.080 0.920 42 H 0.108 0.892 43 H 0.057 0.943 44 H 0.043 0.957 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.977 -19.928 -0.998 21.488 hybrid contribution 0.975 2.145 0.170 2.362 sum -7.002 -17.783 -0.828 19.130 Atomic orbital electron populations 1.70037 1.06705 1.25817 1.57817 1.25713 0.96528 1.01208 1.02551 0.85092 0.77106 0.78316 0.78457 1.19827 1.22138 1.20115 1.19409 0.90999 0.82963 1.43367 0.89227 1.45999 1.03359 1.00818 1.86360 1.23013 0.95032 0.83642 0.98716 1.23085 0.93188 0.84174 0.98206 1.46084 1.41022 1.28862 1.19186 1.22606 0.78963 0.85919 0.85357 1.90602 1.64239 1.69371 1.21575 1.22024 0.93793 0.93530 0.95349 0.84928 1.21611 0.98656 1.00276 0.93002 1.21410 0.97352 0.97628 1.00076 1.21236 0.97448 1.01774 0.93388 1.22835 0.94846 0.93720 0.95991 0.93038 1.22079 0.98374 0.98537 0.95979 1.22463 0.94736 0.99957 0.98004 1.23033 0.97800 1.00577 0.88582 1.64382 1.14798 1.29802 1.12158 1.22497 0.87225 0.91006 0.96267 0.94257 0.92035 0.91532 0.89617 0.74944 0.89599 0.87919 0.95368 0.89788 0.89691 0.92049 0.92413 0.89790 0.89531 0.91970 0.89207 0.94269 0.95732 0.95351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.37 11.38 21.65 0.25 -59.12 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.98 46.20 29.55 68.60 2.03 48.23 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 7 C -0.24 -13.58 10.70 84.03 0.90 -12.68 16 8 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 9 N -0.64 -33.12 3.70 -717.31 -2.65 -35.77 16 10 C 0.12 4.68 8.69 86.48 0.75 5.43 16 11 C 0.12 4.70 4.44 46.76 0.21 4.90 16 12 N -0.70 -20.41 5.22 -447.37 -2.34 -22.74 16 13 C 0.48 14.53 5.64 87.66 0.49 15.02 16 14 O -0.58 -22.39 11.19 -3.01 -0.03 -22.42 16 15 C 0.07 1.42 3.10 44.61 0.14 1.56 16 16 H 0.13 2.19 8.14 -2.39 -0.02 2.17 16 17 C -0.10 -1.70 5.43 30.75 0.17 -1.53 16 18 C -0.13 -2.79 5.62 30.31 0.17 -2.62 16 19 C -0.10 -2.23 5.59 30.12 0.17 -2.06 16 20 C 0.03 0.89 2.18 44.40 0.10 0.98 16 21 H 0.05 1.82 4.99 -2.39 -0.01 1.81 16 22 C -0.11 -2.49 6.66 31.36 0.21 -2.28 16 23 C -0.11 -2.35 7.05 32.03 0.23 -2.13 16 24 C 0.03 0.65 6.41 87.02 0.56 1.21 16 25 N -0.49 -11.26 4.82 -843.35 -4.06 -15.33 16 26 C 0.16 7.76 7.32 86.49 0.63 8.39 16 27 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.07 2.21 8.12 -2.39 -0.02 2.19 16 30 H 0.09 3.80 7.46 -2.39 -0.02 3.78 16 31 H 0.41 9.16 7.71 -92.70 -0.71 8.45 16 32 H 0.09 1.24 7.15 -2.38 -0.02 1.23 16 33 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.03 0.81 7.62 -2.38 -0.02 0.79 16 35 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.08 1.57 8.02 -2.39 -0.02 1.55 16 40 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.04 1.18 5.82 -2.39 -0.01 1.17 16 44 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.03 1.65 7.15 -2.39 -0.02 1.63 16 Total: -1.00 -72.73 341.25 -1.36 -74.10 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.26 Total: 22.29 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: 5.19 Total: 10.77 kcal Atomic # 7 Polarization: -124.16 SS G_CDS: -8.81 Total: -132.97 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.03 Total: -22.42 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -72.73 -1.36 -74.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031082823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.516 kcal (2) G-P(sol) polarization free energy of solvation -72.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds