Wall clock time and date at job start Tue Mar 31 2020 06:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00440 * 2 1 4 4 H 1.48498 * 109.47209 * 89.99105 * 3 2 1 5 5 H 1.48504 * 109.46570 * 329.99433 * 3 2 1 6 6 H 1.48495 * 109.47319 * 209.99681 * 3 2 1 7 7 C 1.38814 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99742 * 15.17115 * 7 2 1 9 9 N 1.36932 * 120.00431 * 195.17932 * 7 2 1 10 10 C 1.47071 * 136.05774 * 7.44306 * 9 7 2 11 11 C 1.53748 * 87.88589 * 152.97163 * 10 9 7 12 12 C 1.52999 * 114.39659 * 272.67596 * 11 10 9 13 13 N 1.46502 * 109.47451 * 268.58823 * 12 11 10 14 14 C 1.34776 * 119.99850 * 179.97438 * 13 12 11 15 15 O 1.21280 * 120.00456 * 0.02562 * 14 13 12 16 16 C 1.50704 * 119.99447 * 179.97438 * 14 13 12 17 17 C 1.54997 * 113.19845 * 64.17537 * 16 14 13 18 18 C 1.54057 * 104.76240 * 146.46407 * 17 16 14 19 19 N 1.48237 * 106.70120 * 1.01665 * 18 17 16 20 20 C 1.48805 * 105.17282 * 332.51120 * 19 18 17 21 21 C 1.47675 * 108.91195 * 88.16158 * 19 18 17 22 22 C 1.52987 * 109.29082 * 312.91267 * 21 19 18 23 23 C 1.54009 * 113.03703 * 301.17555 * 16 14 13 24 24 C 1.47064 * 136.05908 * 187.82899 * 9 7 2 25 25 H 0.96991 * 120.00289 * 174.90671 * 1 2 3 26 26 H 1.08993 * 113.47033 * 267.70597 * 10 9 7 27 27 H 1.09001 * 113.46589 * 38.14337 * 10 9 7 28 28 H 1.09000 * 114.08516 * 139.78501 * 11 10 9 29 29 H 1.08999 * 109.46924 * 28.59080 * 12 11 10 30 30 H 1.09008 * 109.47266 * 148.58819 * 12 11 10 31 31 H 0.96995 * 119.99755 * 359.97438 * 13 12 11 32 32 H 1.08999 * 110.37555 * 265.28115 * 17 16 14 33 33 H 1.09000 * 110.37987 * 27.64369 * 17 16 14 34 34 H 1.08996 * 110.01709 * 241.70171 * 18 17 16 35 35 H 1.09004 * 110.05078 * 120.34938 * 18 17 16 36 36 H 1.08995 * 110.93504 * 284.56367 * 20 19 18 37 37 H 1.09004 * 110.96059 * 160.91298 * 20 19 18 38 38 H 1.09000 * 109.50318 * 72.85728 * 21 19 18 39 39 H 1.09006 * 109.50163 * 192.96946 * 21 19 18 40 40 H 1.09000 * 109.36592 * 64.97892 * 22 21 19 41 41 H 1.09001 * 109.36894 * 184.59751 * 22 21 19 42 42 H 1.09006 * 109.63313 * 291.83691 * 23 16 14 43 43 H 1.08997 * 109.62971 * 52.42547 * 23 16 14 44 44 H 1.08994 * 113.46675 * 321.85560 * 24 9 7 45 45 H 1.09006 * 113.46861 * 92.29612 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 1.4000 5 1 1.4478 2.6526 -0.7002 6 1 3.5479 1.4401 -0.6999 7 6 2.0103 -1.2021 0.0005 8 1 1.4985 -2.1213 -0.2438 9 7 3.3438 -1.2228 0.3110 10 6 4.3298 -0.2527 0.8108 11 6 5.1047 -1.4365 1.4126 12 6 4.6544 -1.8372 2.8188 13 7 5.4515 -1.1128 3.8119 14 6 5.2289 -1.3076 5.1268 15 8 4.3690 -2.0828 5.4880 16 6 6.0493 -0.5629 6.1483 17 6 5.8362 0.9717 6.1014 18 6 5.9766 1.4324 7.5648 19 7 6.2761 0.2215 8.3657 20 6 5.6620 -0.9054 7.6125 21 6 7.7379 0.0135 8.3905 22 6 8.2920 0.1498 6.9710 23 6 7.5601 -0.8337 6.0215 24 6 4.4217 -2.2228 0.2851 25 1 -0.4850 -0.8366 -0.0746 26 1 4.8718 0.2629 0.0182 27 1 3.9267 0.4295 1.5592 28 1 6.1870 -1.3576 1.3105 29 1 3.6008 -1.5890 2.9475 30 1 4.7940 -2.9099 2.9532 31 1 6.1395 -0.4931 3.5230 32 1 6.5987 1.4419 5.4806 33 1 4.8407 1.2053 5.7238 34 1 5.0445 1.8835 7.9049 35 1 6.7923 2.1499 7.6540 36 1 4.5792 -0.9130 7.7374 37 1 6.0938 -1.8589 7.9167 38 1 8.2009 0.7608 9.0350 39 1 7.9572 -0.9835 8.7726 40 1 8.1494 1.1732 6.6240 41 1 9.3567 -0.0837 6.9745 42 1 7.7714 -1.8668 6.2979 43 1 7.8795 -0.6536 4.9951 44 1 4.0970 -3.2189 0.5855 45 1 4.9881 -2.2265 -0.6463 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032152852.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:26 Heat of formation + Delta-G solvation = 33.951964 kcal Electronic energy + Delta-G solvation = -24539.452781 eV Core-core repulsion = 21172.750361 eV Total energy + Delta-G solvation = -3366.702420 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.45619 -39.28354 -38.30580 -34.47989 -32.69701 -32.33409 -32.19520 -29.49951 -28.93583 -26.19523 -25.32149 -24.87883 -23.32903 -22.00382 -21.65245 -20.49509 -19.66551 -18.81830 -17.49592 -17.16581 -16.49926 -16.10259 -15.47999 -15.37206 -14.83991 -14.54371 -14.20705 -13.99606 -13.63244 -13.37635 -13.28056 -13.12281 -13.00548 -12.87285 -12.54954 -11.94731 -11.82953 -11.74803 -11.63078 -11.29614 -11.06793 -11.04966 -11.04430 -10.82495 -10.75711 -10.45449 -10.11681 -9.65458 -9.50672 -9.18750 -8.86131 -8.80103 -8.70431 -7.18594 -6.29694 -3.21750 2.66379 3.20491 3.38404 3.45274 3.60401 3.69295 4.20709 4.34316 4.44382 4.58882 4.65457 4.72320 4.74314 4.76324 4.86098 4.97693 5.08436 5.13356 5.17025 5.23039 5.36455 5.42543 5.45356 5.51196 5.56837 5.65005 5.70203 5.72086 5.80607 5.88217 5.91717 5.93954 6.13013 6.20604 6.29557 6.35960 6.40176 6.47652 6.56404 6.65824 6.85096 7.12841 7.59752 8.25177 8.31023 8.98411 9.51655 10.37557 11.20363 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022492 B = 0.003912 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.605466 B = 7155.514554 C = 7497.691321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.024 4.024 3 Si 1.063 2.937 4 H -0.294 1.294 5 H -0.295 1.295 6 H -0.283 1.283 7 C -0.305 4.305 8 H 0.082 0.918 9 N -0.623 5.623 10 C 0.105 3.895 11 C -0.146 4.146 12 C 0.146 3.854 13 N -0.722 5.722 14 C 0.534 3.466 15 O -0.535 6.535 16 C -0.120 4.120 17 C -0.137 4.137 18 C 0.031 3.969 19 N -0.496 5.496 20 C 0.057 3.943 21 C 0.031 3.969 22 C -0.155 4.155 23 C -0.104 4.104 24 C 0.127 3.873 25 H 0.262 0.738 26 H 0.046 0.954 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.397 0.603 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.047 0.953 45 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.883 1.571 14.077 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.223 4.223 3 Si 0.895 3.105 4 H -0.222 1.222 5 H -0.223 1.223 6 H -0.209 1.209 7 C -0.432 4.432 8 H 0.099 0.901 9 N -0.351 5.351 10 C -0.021 4.021 11 C -0.166 4.166 12 C 0.023 3.977 13 N -0.373 5.373 14 C 0.319 3.681 15 O -0.412 6.412 16 C -0.125 4.125 17 C -0.176 4.176 18 C -0.098 4.098 19 N -0.216 5.216 20 C -0.072 4.072 21 C -0.098 4.098 22 C -0.193 4.193 23 C -0.142 4.142 24 C 0.000 4.000 25 H 0.072 0.928 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.230 0.770 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.112 0.888 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 19.563 2.689 14.944 24.764 hybrid contribution 0.906 -1.376 -1.483 2.216 sum 20.468 1.313 13.461 24.533 Atomic orbital electron populations 1.70883 1.05435 1.29613 1.51470 1.25752 0.96504 1.00834 0.99196 0.83770 0.74502 0.75958 0.76317 1.22231 1.22285 1.20919 1.20141 0.80485 0.95957 1.46587 0.90060 1.46264 1.03554 1.07984 1.77302 1.22758 0.90192 0.93282 0.95885 1.23169 0.98291 1.00688 0.94429 1.21063 0.96285 0.95519 0.84787 1.46045 1.39406 1.46035 1.05800 1.19870 0.83417 0.82090 0.82761 1.90722 1.33429 1.36626 1.80387 1.22647 0.96369 0.96394 0.97046 1.22936 1.03326 0.92647 0.98690 1.23081 1.02405 0.93788 0.90506 1.66444 1.08472 1.02623 1.44041 1.23394 1.01646 0.94584 0.87590 1.22626 0.88874 1.02631 0.95653 1.22590 1.00254 1.00162 0.96343 1.22148 0.91833 1.00004 1.00207 1.22329 0.89054 0.94545 0.94077 0.92805 0.93679 0.93056 0.90423 0.89841 0.91643 0.76954 0.90342 0.90451 0.89813 0.90680 0.88789 0.89844 0.90341 0.90571 0.90833 0.91173 0.90918 0.91212 0.93423 0.94309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.79 13.70 55.49 0.76 -29.03 16 2 C -0.02 -0.71 5.50 -17.43 -0.10 -0.80 16 3 Si 1.06 26.68 25.50 -169.99 -4.34 22.34 16 4 H -0.29 -7.11 6.97 56.52 0.39 -6.72 16 5 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -6.51 5.66 56.52 0.32 -6.19 16 7 C -0.31 -8.84 11.03 -15.06 -0.17 -9.01 16 8 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 9 N -0.62 -15.09 3.46 -184.62 -0.64 -15.73 16 10 C 0.10 2.11 5.12 -8.38 -0.04 2.06 16 11 C -0.15 -2.33 4.18 -89.98 -0.38 -2.71 16 12 C 0.15 2.41 5.51 -4.04 -0.02 2.39 16 13 N -0.72 -9.70 5.50 -60.29 -0.33 -10.03 16 14 C 0.53 7.72 6.79 -10.98 -0.07 7.65 16 15 O -0.54 -10.08 16.15 5.56 0.09 -9.99 16 16 C -0.12 -1.27 0.95 -152.86 -0.14 -1.42 16 17 C -0.14 -1.30 5.50 -25.12 -0.14 -1.44 16 18 C 0.03 0.27 6.20 -2.53 -0.02 0.25 16 19 N -0.50 -4.80 6.07 -228.99 -1.39 -6.19 16 20 C 0.06 0.63 5.46 -1.55 -0.01 0.62 16 21 C 0.03 0.23 5.84 -3.40 -0.02 0.21 16 22 C -0.15 -1.03 5.56 -25.65 -0.14 -1.17 16 23 C -0.10 -0.84 5.13 -25.11 -0.13 -0.97 16 24 C 0.13 2.41 8.25 -8.52 -0.07 2.34 16 25 H 0.26 8.28 8.73 -40.82 -0.36 7.93 16 26 H 0.05 0.88 7.02 -51.93 -0.36 0.52 16 27 H 0.05 1.09 6.20 -51.93 -0.32 0.77 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.74 7.92 -51.93 -0.41 1.33 16 30 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 31 H 0.40 4.17 8.03 -40.82 -0.33 3.84 16 32 H 0.08 0.61 6.95 -51.93 -0.36 0.25 16 33 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.54 6.94 -51.93 -0.36 0.18 16 36 H 0.09 1.24 7.90 -51.93 -0.41 0.83 16 37 H 0.08 0.90 7.68 -51.93 -0.40 0.50 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.55 7.87 -51.93 -0.41 0.15 16 40 H 0.07 0.47 5.37 -51.93 -0.28 0.19 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.61 8.06 -51.93 -0.42 0.19 16 43 H 0.07 0.51 7.69 -51.93 -0.40 0.11 16 44 H 0.05 0.89 8.12 -51.93 -0.42 0.47 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 340.52 15.07 5.13 5.13 Total: -1.00 -34.23 340.52 -9.66 -43.88 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.50 Total: 1.61 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -1.45 Total: -1.99 kcal Atomic # 7 Polarization: -59.39 SS G_CDS: -1.60 Total: -60.99 kcal Atomic # 8 Polarization: -10.08 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -4.34 Total: 22.34 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.23 -9.66 -43.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032152852.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.836 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds