Wall clock time and date at job start Tue Mar 31 2020 07:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.47067 * 136.05567 * 359.97438 * 9 7 2 11 11 C 1.53498 * 87.98663 * 207.08228 * 10 9 7 12 12 C 1.47069 * 136.06210 * 179.62928 * 9 7 2 13 13 H 1.08997 * 113.46954 * 267.70004 * 12 9 7 14 14 C 1.53004 * 113.46417 * 38.13315 * 12 9 7 15 15 N 1.46500 * 109.47369 * 285.49772 * 14 12 9 16 16 C 1.34773 * 119.99852 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00239 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99811 * 180.02562 * 16 15 14 19 19 H 1.08998 * 109.58059 * 59.73295 * 18 16 15 20 20 C 1.53148 * 109.57553 * 299.33602 * 18 16 15 21 21 N 1.46898 * 109.37041 * 240.21160 * 20 18 16 22 22 C 1.46946 * 111.05993 * 61.99444 * 21 20 18 23 23 C 1.53130 * 109.34867 * 298.03256 * 22 21 20 24 24 C 1.53384 * 109.57710 * 180.02562 * 18 16 15 25 25 C 1.53398 * 108.59970 * 179.55078 * 24 18 16 26 26 C 1.46947 * 111.05851 * 297.99377 * 21 20 18 27 27 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 28 28 H 1.09001 * 113.46969 * 321.86750 * 10 9 7 29 29 H 1.09011 * 113.46793 * 92.30744 * 10 9 7 30 30 H 1.09000 * 114.19826 * 87.52227 * 11 10 9 31 31 H 1.08994 * 114.20580 * 220.14221 * 11 10 9 32 32 H 1.09008 * 109.46810 * 45.49807 * 14 12 9 33 33 H 1.08994 * 109.46761 * 165.49423 * 14 12 9 34 34 H 0.96999 * 120.00022 * 359.97438 * 15 14 12 35 35 H 1.09000 * 109.48860 * 0.18529 * 20 18 16 36 36 H 1.08997 * 109.48284 * 120.24548 * 20 18 16 37 37 H 1.08996 * 109.49153 * 178.06997 * 22 21 20 38 38 H 1.08999 * 109.50958 * 58.00874 * 22 21 20 39 39 H 1.08993 * 109.57495 * 240.13685 * 23 22 21 40 40 H 1.09002 * 109.67810 * 119.81707 * 23 22 21 41 41 H 1.09004 * 110.11301 * 300.18593 * 24 18 16 42 42 H 1.09000 * 109.57117 * 60.79961 * 25 24 18 43 43 H 1.08997 * 109.57651 * 181.18156 * 25 24 18 44 44 H 1.09002 * 109.49388 * 181.92031 * 26 21 20 45 45 H 1.09004 * 109.49026 * 301.96587 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 -0.0878 -2.7948 -0.0122 11 6 0.3423 -4.0958 0.6795 12 6 1.6798 -3.8154 -0.0247 13 1 1.7394 -4.2384 -1.0275 14 6 2.9031 -4.1476 0.8320 15 7 4.1162 -3.6916 0.1488 16 6 5.3223 -3.8796 0.7200 17 8 5.4035 -4.4259 1.7999 18 6 6.5702 -3.4101 0.0174 19 1 6.5165 -2.3331 -0.1416 20 6 6.6998 -4.1249 -1.3308 21 7 7.9532 -4.8905 -1.3578 22 6 7.9614 -5.9271 -0.3163 23 6 7.8673 -5.2637 1.0606 24 6 7.7983 -3.7433 0.8737 25 6 9.0546 -3.2666 0.1337 26 6 9.1169 -4.0030 -1.2256 27 1 -0.4850 0.8401 0.0041 28 1 -0.7220 -2.1621 0.6088 29 1 -0.4946 -2.9486 -1.0118 30 1 0.3841 -4.0312 1.7668 31 1 -0.1754 -4.9852 0.3204 32 1 2.8187 -3.6458 1.7960 33 1 2.9565 -5.2252 0.9867 34 1 4.0514 -3.2551 -0.7150 35 1 5.8567 -4.8025 -1.4656 36 1 6.7064 -3.3879 -2.1338 37 1 8.8860 -6.5006 -0.3813 38 1 7.1099 -6.5925 -0.4584 39 1 8.7475 -5.5198 1.6502 40 1 6.9703 -5.6096 1.5742 41 1 7.7245 -3.2500 1.8430 42 1 9.0035 -2.1880 -0.0153 43 1 9.9397 -3.5146 0.7195 44 1 10.0321 -4.5923 -1.2830 45 1 9.1068 -3.2677 -2.0303 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038251155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:05 Heat of formation + Delta-G solvation = 25.716341 kcal Electronic energy + Delta-G solvation = -24805.296676 eV Core-core repulsion = 21438.237132 eV Total energy + Delta-G solvation = -3367.059544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19832 -38.86220 -37.89328 -34.15981 -32.30381 -32.24497 -31.42621 -30.92925 -28.07428 -27.51423 -23.98667 -23.49841 -23.11931 -23.00834 -21.83406 -20.20874 -19.25571 -17.69408 -17.26850 -16.56993 -16.54589 -16.39183 -15.46075 -15.22122 -15.02120 -14.51289 -13.94011 -13.57090 -13.27663 -13.13833 -12.96111 -12.77467 -12.36273 -12.26714 -12.21562 -12.13340 -11.71273 -11.54839 -11.50860 -11.14570 -11.06892 -10.99643 -10.79827 -10.61796 -10.42875 -10.28478 -9.98501 -9.87026 -9.50822 -9.11961 -8.84367 -8.57796 -8.30933 -6.93240 -5.80223 -3.12839 2.93836 3.34703 3.39130 3.40954 3.51848 3.85836 4.39682 4.43284 4.60971 4.76994 4.92316 5.06014 5.06334 5.11129 5.16413 5.18255 5.32566 5.37345 5.38949 5.53936 5.54351 5.66893 5.71257 5.71785 5.83887 5.89068 5.89885 6.00702 6.07604 6.09981 6.14278 6.30262 6.35664 6.41660 6.57727 6.70763 6.88979 6.92905 6.94363 7.19444 7.36526 7.54317 7.90477 7.94112 8.57255 8.99228 9.66753 10.59858 11.36922 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.004595 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.910438 B = 6092.772438 C = 7072.283780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.215 4.215 8 H 0.079 0.921 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.048 0.952 14 C 0.122 3.878 15 N -0.712 5.712 16 C 0.517 3.483 17 O -0.548 6.548 18 C -0.142 4.142 19 H 0.099 0.901 20 C 0.062 3.938 21 N -0.527 5.527 22 C 0.052 3.948 23 C -0.159 4.159 24 C -0.066 4.066 25 C -0.150 4.150 26 C 0.051 3.949 27 H 0.254 0.746 28 H 0.072 0.928 29 H 0.025 0.975 30 H 0.079 0.921 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.403 0.597 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.179 -10.018 -2.295 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.738 3.262 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.342 4.342 8 H 0.097 0.903 9 N -0.327 5.327 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.362 5.362 16 C 0.303 3.697 17 O -0.427 6.427 18 C -0.165 4.165 19 H 0.117 0.883 20 C -0.067 4.067 21 N -0.247 5.247 22 C -0.077 4.077 23 C -0.198 4.198 24 C -0.085 4.085 25 C -0.190 4.190 26 C -0.077 4.077 27 H 0.064 0.936 28 H 0.090 0.910 29 H 0.043 0.957 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.237 0.763 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.099 0.901 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.272 -10.276 -2.018 17.702 hybrid contribution 0.308 1.768 0.308 1.820 sum 14.580 -8.509 -1.710 16.967 Atomic orbital electron populations 1.69818 1.04970 1.25414 1.56263 1.24770 0.95631 0.97400 1.02516 0.86269 0.78572 0.83472 0.77866 1.21498 1.21172 1.21192 1.18782 0.89923 0.81390 1.44110 0.90337 1.45677 1.02597 0.98586 1.85809 1.22029 0.88698 0.90162 0.96545 1.23694 0.96945 0.99024 1.00342 1.22457 0.92011 0.87742 0.95855 0.93479 1.21776 0.83297 0.97995 0.97142 1.45990 1.05908 1.60358 1.23912 1.20400 0.84674 0.78961 0.85642 1.90588 1.86838 1.43722 1.21533 1.22102 0.93876 1.02578 0.97938 0.88274 1.22233 0.92876 0.97181 0.94427 1.62551 1.02230 1.13658 1.46244 1.22220 1.02309 0.93978 0.89157 1.22449 1.04041 0.94935 0.98350 1.20864 0.92342 0.96854 0.98457 1.22581 0.97923 1.00626 0.97835 1.22497 0.93607 0.95468 0.96153 0.93609 0.91005 0.95748 0.90250 0.92373 0.91225 0.92427 0.76291 0.90050 0.89660 0.90916 0.90889 0.92249 0.88549 0.90061 0.91357 0.91488 0.90642 0.90647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.74 11.51 55.49 0.64 -26.10 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.21 -5.68 10.55 -15.06 -0.16 -5.84 16 8 H 0.08 1.98 7.51 -52.49 -0.39 1.59 16 9 N -0.60 -14.44 3.65 -176.86 -0.65 -15.08 16 10 C 0.15 3.43 7.39 -8.51 -0.06 3.37 16 11 C -0.16 -2.91 8.04 -26.10 -0.21 -3.12 16 12 C 0.13 2.41 4.11 -72.28 -0.30 2.11 16 13 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 14 C 0.12 2.19 5.53 -4.04 -0.02 2.16 16 15 N -0.71 -11.75 5.10 -60.29 -0.31 -12.06 16 16 C 0.52 8.40 6.59 -10.99 -0.07 8.33 16 17 O -0.55 -10.43 13.72 5.55 0.08 -10.36 16 18 C -0.14 -1.84 2.59 -91.50 -0.24 -2.08 16 19 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 20 C 0.06 0.71 5.62 -3.75 -0.02 0.69 16 21 N -0.53 -5.79 5.22 -233.24 -1.22 -7.00 16 22 C 0.05 0.57 6.09 -3.73 -0.02 0.54 16 23 C -0.16 -1.94 5.44 -26.49 -0.14 -2.08 16 24 C -0.07 -0.81 2.54 -90.04 -0.23 -1.04 16 25 C -0.15 -1.48 5.89 -25.62 -0.15 -1.63 16 26 C 0.05 0.48 6.13 -2.89 -0.02 0.47 16 27 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.07 1.83 7.13 -51.93 -0.37 1.46 16 29 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.08 1.44 8.13 -51.93 -0.42 1.01 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.44 8.14 -51.92 -0.42 1.01 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.40 6.38 8.30 -40.82 -0.34 6.04 16 35 H 0.08 0.98 7.47 -51.93 -0.39 0.59 16 36 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.10 1.44 5.57 -51.93 -0.29 1.15 16 41 H 0.08 1.12 8.11 -51.93 -0.42 0.70 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -30.58 346.61 -10.67 -41.25 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -7.68 Total: 5.77 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.74 Total: 1.62 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -1.53 Total: -60.24 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.58 -10.67 -41.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038251155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.968 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds