Wall clock time and date at job start Tue Mar 31 2020 07:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00218 * 2 1 4 4 H 1.48497 * 109.47173 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00250 * 3 2 1 6 6 H 1.48501 * 109.47438 * 240.00370 * 3 2 1 7 7 C 1.38812 * 119.99535 * 180.28285 * 2 1 3 8 8 H 1.08002 * 119.99473 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00429 * 359.97438 * 7 2 1 10 10 C 1.47067 * 136.05567 * 359.97438 * 9 7 2 11 11 C 1.53498 * 87.98663 * 207.08228 * 10 9 7 12 12 C 1.47069 * 136.06210 * 179.62928 * 9 7 2 13 13 H 1.08997 * 113.46954 * 267.70004 * 12 9 7 14 14 C 1.53004 * 113.46417 * 38.13315 * 12 9 7 15 15 N 1.46500 * 109.47369 * 285.49772 * 14 12 9 16 16 C 1.34773 * 119.99852 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00239 * 359.97438 * 16 15 14 18 18 C 1.50700 * 119.99811 * 180.02562 * 16 15 14 19 19 H 1.08998 * 109.58059 * 59.73295 * 18 16 15 20 20 C 1.53148 * 109.57553 * 299.33602 * 18 16 15 21 21 N 1.46898 * 109.37041 * 240.21160 * 20 18 16 22 22 C 1.46946 * 111.05993 * 61.99444 * 21 20 18 23 23 C 1.53130 * 109.34867 * 298.03256 * 22 21 20 24 24 C 1.53384 * 109.57710 * 180.02562 * 18 16 15 25 25 C 1.53398 * 108.59970 * 179.55078 * 24 18 16 26 26 C 1.46947 * 111.05851 * 297.99377 * 21 20 18 27 27 H 0.97005 * 119.99717 * 359.71788 * 1 2 3 28 28 H 1.09001 * 113.46969 * 321.86750 * 10 9 7 29 29 H 1.09011 * 113.46793 * 92.30744 * 10 9 7 30 30 H 1.09000 * 114.19826 * 87.52227 * 11 10 9 31 31 H 1.08994 * 114.20580 * 220.14221 * 11 10 9 32 32 H 1.09008 * 109.46810 * 45.49807 * 14 12 9 33 33 H 1.08994 * 109.46761 * 165.49423 * 14 12 9 34 34 H 0.96999 * 120.00022 * 359.97438 * 15 14 12 35 35 H 1.09000 * 109.48860 * 0.18529 * 20 18 16 36 36 H 1.08997 * 109.48284 * 120.24548 * 20 18 16 37 37 H 1.08996 * 109.49153 * 178.06997 * 22 21 20 38 38 H 1.08999 * 109.50958 * 58.00874 * 22 21 20 39 39 H 1.08993 * 109.57495 * 240.13685 * 23 22 21 40 40 H 1.09002 * 109.67810 * 119.81707 * 23 22 21 41 41 H 1.09004 * 110.11301 * 300.18593 * 24 18 16 42 42 H 1.09000 * 109.57117 * 60.79961 * 25 24 18 43 43 H 1.08997 * 109.57651 * 181.18156 * 25 24 18 44 44 H 1.09002 * 109.49388 * 181.92031 * 26 21 20 45 45 H 1.09004 * 109.49026 * 301.96587 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 0.0006 5 1 3.1041 1.6962 1.2125 6 1 3.1040 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0059 8 1 3.0902 -1.2022 -0.0064 9 7 1.3255 -2.3880 -0.0113 10 6 -0.0878 -2.7948 -0.0122 11 6 0.3423 -4.0958 0.6795 12 6 1.6798 -3.8154 -0.0247 13 1 1.7394 -4.2384 -1.0275 14 6 2.9031 -4.1476 0.8320 15 7 4.1162 -3.6916 0.1488 16 6 5.3223 -3.8796 0.7200 17 8 5.4035 -4.4259 1.7999 18 6 6.5702 -3.4101 0.0174 19 1 6.5165 -2.3331 -0.1416 20 6 6.6998 -4.1249 -1.3308 21 7 7.9532 -4.8905 -1.3578 22 6 7.9614 -5.9271 -0.3163 23 6 7.8673 -5.2637 1.0606 24 6 7.7983 -3.7433 0.8737 25 6 9.0546 -3.2666 0.1337 26 6 9.1169 -4.0030 -1.2256 27 1 -0.4850 0.8401 0.0041 28 1 -0.7220 -2.1621 0.6088 29 1 -0.4946 -2.9486 -1.0118 30 1 0.3841 -4.0312 1.7668 31 1 -0.1754 -4.9852 0.3204 32 1 2.8187 -3.6458 1.7960 33 1 2.9565 -5.2252 0.9867 34 1 4.0514 -3.2551 -0.7150 35 1 5.8567 -4.8025 -1.4656 36 1 6.7064 -3.3879 -2.1338 37 1 8.8860 -6.5006 -0.3813 38 1 7.1099 -6.5925 -0.4584 39 1 8.7475 -5.5198 1.6502 40 1 6.9703 -5.6096 1.5742 41 1 7.7245 -3.2500 1.8430 42 1 9.0035 -2.1880 -0.0153 43 1 9.9397 -3.5146 0.7195 44 1 10.0321 -4.5923 -1.2830 45 1 9.1068 -3.2677 -2.0303 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038251155.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:04 Heat of formation + Delta-G solvation = 4.570959 kcal Electronic energy + Delta-G solvation = -24806.213609 eV Core-core repulsion = 21438.237132 eV Total energy + Delta-G solvation = -3367.976476 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.21534 -40.29476 -39.35785 -35.57939 -34.25184 -33.21872 -32.45083 -31.76047 -29.95423 -29.00351 -25.39569 -25.08771 -24.04115 -23.84354 -23.31368 -21.53653 -20.93426 -18.99568 -18.38216 -18.08851 -17.58474 -17.35981 -17.02119 -16.65195 -16.32470 -15.92867 -15.63948 -15.09725 -14.82184 -14.22362 -13.94318 -13.88056 -13.66050 -13.38843 -13.14474 -13.12230 -13.04779 -12.96339 -12.89389 -12.69912 -12.58695 -12.47636 -12.35121 -12.00991 -11.83227 -11.64620 -11.35667 -11.18660 -11.08569 -10.84413 -10.47360 -9.97421 -9.21586 -8.89171 -7.87255 -5.18917 1.43331 1.45889 1.51421 1.64996 2.23239 2.47425 3.01819 3.34457 3.42417 3.48923 3.64811 3.82798 3.92595 4.01410 4.06363 4.16923 4.21447 4.26972 4.34199 4.35953 4.40795 4.48393 4.61683 4.64373 4.68960 4.82787 4.87245 4.95170 5.01844 5.04889 5.08643 5.09778 5.13788 5.18166 5.19836 5.32313 5.39288 5.53149 5.59815 5.73861 5.97050 6.05988 6.12974 6.58967 6.93554 7.27001 7.64457 8.64341 9.30283 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017820 B = 0.004595 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.910438 B = 6092.772438 C = 7072.283780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.071 4.071 3 Si 0.967 3.033 4 H -0.298 1.298 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.207 4.207 8 H 0.087 0.913 9 N -0.628 5.628 10 C 0.143 3.857 11 C -0.135 4.135 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.133 3.867 15 N -0.711 5.711 16 C 0.514 3.486 17 O -0.579 6.579 18 C -0.136 4.136 19 H 0.104 0.896 20 C 0.066 3.934 21 N -0.529 5.529 22 C 0.055 3.945 23 C -0.155 4.155 24 C -0.069 4.069 25 C -0.143 4.143 26 C 0.051 3.949 27 H 0.245 0.755 28 H 0.035 0.965 29 H 0.023 0.977 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.407 0.593 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.408 -11.032 -3.554 20.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.796 3.204 4 H -0.225 1.225 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.336 4.336 8 H 0.105 0.895 9 N -0.354 5.354 10 C 0.017 3.983 11 C -0.174 4.174 12 C 0.028 3.972 13 H 0.087 0.913 14 C 0.008 3.992 15 N -0.361 5.361 16 C 0.302 3.698 17 O -0.459 6.459 18 C -0.159 4.159 19 H 0.122 0.878 20 C -0.063 4.063 21 N -0.249 5.249 22 C -0.073 4.073 23 C -0.194 4.194 24 C -0.089 4.089 25 C -0.182 4.182 26 C -0.077 4.077 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.242 0.758 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.533 -11.322 -3.296 20.308 hybrid contribution -0.380 1.987 0.740 2.154 sum 16.154 -9.336 -2.556 18.832 Atomic orbital electron populations 1.70008 1.06336 1.25270 1.58748 1.25531 0.96406 1.00529 1.03863 0.85314 0.77249 0.79669 0.78127 1.22467 1.21136 1.19751 1.19160 0.90536 0.82472 1.41409 0.89537 1.45992 1.03579 1.00045 1.85817 1.22042 0.87832 0.92051 0.96373 1.23517 0.95946 0.98077 0.99871 1.22592 0.92891 0.84748 0.96989 0.91287 1.21531 0.83611 0.98640 0.95441 1.45979 1.05721 1.60411 1.23998 1.21017 0.85403 0.78146 0.85280 1.90584 1.87305 1.45056 1.23000 1.22141 0.92262 1.02854 0.98662 0.87796 1.22235 0.93151 0.97282 0.93634 1.62582 1.02467 1.13875 1.45948 1.22211 1.02928 0.93964 0.88238 1.22361 1.02931 0.94949 0.99126 1.20883 0.93448 0.96854 0.97729 1.22545 0.96712 1.00971 0.97945 1.22608 0.93455 0.95646 0.96006 0.94607 0.94688 0.95909 0.90471 0.88257 0.94406 0.90602 0.75768 0.90746 0.88046 0.89051 0.91743 0.91249 0.91656 0.92272 0.90807 0.90397 0.89117 0.89517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.16 11.51 21.65 0.25 -56.91 16 2 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 3 Si 0.97 45.20 29.55 68.60 2.03 47.23 16 4 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.21 -10.97 10.55 84.03 0.89 -10.08 16 8 H 0.09 4.31 7.51 -2.91 -0.02 4.29 16 9 N -0.63 -30.06 3.65 -713.45 -2.60 -32.66 16 10 C 0.14 6.50 7.39 83.17 0.61 7.11 16 11 C -0.14 -4.65 8.04 31.01 0.25 -4.40 16 12 C 0.13 4.85 4.11 41.87 0.17 5.03 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.13 4.60 5.53 86.38 0.48 5.08 16 15 N -0.71 -22.76 5.10 -463.05 -2.36 -25.12 16 16 C 0.51 16.43 6.59 87.66 0.58 17.01 16 17 O -0.58 -22.23 13.72 -3.05 -0.04 -22.27 16 18 C -0.14 -3.35 2.59 -11.36 -0.03 -3.38 16 19 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 20 C 0.07 1.37 5.62 86.35 0.49 1.85 16 21 N -0.53 -10.14 5.22 -891.84 -4.65 -14.79 16 22 C 0.05 1.09 6.09 86.34 0.53 1.62 16 23 C -0.15 -3.61 5.44 30.75 0.17 -3.44 16 24 C -0.07 -1.63 2.54 -10.42 -0.03 -1.65 16 25 C -0.14 -2.42 5.89 31.32 0.18 -2.23 16 26 C 0.05 0.78 6.13 86.88 0.53 1.31 16 27 H 0.24 14.46 8.31 -92.70 -0.77 13.69 16 28 H 0.03 1.83 7.13 -2.39 -0.02 1.82 16 29 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.08 2.70 8.13 -2.39 -0.02 2.68 16 31 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.41 12.30 8.30 -92.71 -0.77 11.53 16 35 H 0.07 1.65 7.47 -2.39 -0.02 1.63 16 36 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.96 5.57 -2.39 -0.01 1.94 16 41 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -67.41 346.61 -1.90 -69.31 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.20 Total: 24.89 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 5.29 Total: 10.34 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -9.37 Total: -129.49 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.04 Total: -22.27 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -67.41 -1.90 -69.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038251155.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.880 kcal (2) G-P(sol) polarization free energy of solvation -67.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds