Wall clock time and date at job start Tue Mar 31 2020 07:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86797 * 119.99945 * 2 1 4 4 H 1.48498 * 109.47273 * 270.00304 * 3 2 1 5 5 H 1.48503 * 109.47182 * 30.00689 * 3 2 1 6 6 H 1.48502 * 109.47008 * 150.00528 * 3 2 1 7 7 C 1.38813 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99690 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99961 * 359.97438 * 7 2 1 10 10 C 1.47809 * 134.58739 * 359.95908 * 9 7 2 11 11 C 1.53945 * 86.16366 * 204.57239 * 10 9 7 12 12 C 1.47587 * 134.49039 * 180.02562 * 9 7 2 13 13 H 1.09000 * 113.76719 * 269.78754 * 12 9 7 14 14 C 1.53000 * 113.76840 * 41.07687 * 12 9 7 15 15 N 1.46505 * 109.46760 * 283.65080 * 14 12 9 16 16 C 1.34778 * 119.99970 * 180.02562 * 15 14 12 17 17 O 1.21284 * 119.99636 * 359.97438 * 16 15 14 18 18 C 1.50692 * 120.00376 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.57486 * 300.25716 * 18 16 15 20 20 C 1.53132 * 109.57697 * 60.63810 * 18 16 15 21 21 N 1.46947 * 109.35220 * 119.87375 * 20 18 16 22 22 C 1.46903 * 111.05178 * 61.96197 * 21 20 18 23 23 C 1.53146 * 109.37067 * 297.99248 * 22 21 20 24 24 C 1.53388 * 108.82544 * 0.02562 * 23 22 21 25 25 C 1.53394 * 108.59537 * 301.03398 * 24 23 22 26 26 C 1.46937 * 110.96988 * 297.91083 * 21 20 18 27 27 H 0.97002 * 120.00113 * 359.97438 * 1 2 3 28 28 H 1.09002 * 113.66490 * 90.25981 * 10 9 7 29 29 H 1.09002 * 113.93684 * 318.92306 * 10 9 7 30 30 H 1.09002 * 113.74135 * 222.13952 * 11 10 9 31 31 H 1.09001 * 113.83398 * 90.84020 * 11 10 9 32 32 H 1.09002 * 109.47248 * 163.65730 * 14 12 9 33 33 H 1.08995 * 109.47437 * 43.65045 * 14 12 9 34 34 H 0.96997 * 119.99935 * 0.02562 * 15 14 12 35 35 H 1.09005 * 109.48818 * 359.91353 * 20 18 16 36 36 H 1.09000 * 109.49385 * 239.84182 * 20 18 16 37 37 H 1.09001 * 109.48964 * 178.02671 * 22 21 20 38 38 H 1.09000 * 109.49397 * 57.96383 * 22 21 20 39 39 H 1.08993 * 109.57807 * 119.81582 * 23 22 21 40 40 H 1.09005 * 109.57831 * 240.21176 * 23 22 21 41 41 H 1.08992 * 110.11493 * 180.39501 * 24 23 22 42 42 H 1.09005 * 109.57403 * 299.18541 * 25 24 23 43 43 H 1.09002 * 109.67773 * 178.86818 * 25 24 23 44 44 H 1.09004 * 109.49036 * 182.04196 * 26 21 20 45 45 H 1.08995 * 109.49788 * 302.12236 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4401 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1049 -2.7603 0.0007 11 6 0.3472 -4.0866 0.6382 12 6 1.7202 -3.8102 -0.0005 13 1 1.8340 -4.2345 -0.9981 14 6 2.9021 -4.1221 0.9195 15 7 4.1449 -3.6719 0.2876 16 6 5.3229 -3.8445 0.9191 17 8 5.3542 -4.3721 2.0107 18 6 6.6012 -3.3809 0.2695 19 1 6.7332 -3.8933 -0.6835 20 6 6.5397 -1.8685 0.0376 21 7 7.6356 -1.2187 0.7698 22 6 8.9424 -1.6790 0.2816 23 6 9.0720 -3.1860 0.5212 24 6 7.7879 -3.6933 1.1893 25 6 7.5935 -2.9394 2.5110 26 6 7.5048 -1.4393 2.2167 27 1 -0.4850 0.8401 0.0004 28 1 -0.5282 -2.8743 -0.9973 29 1 -0.7214 -2.1452 0.6563 30 1 -0.1575 -4.9632 0.2320 31 1 0.3592 -4.0699 1.7280 32 1 2.9524 -5.1968 1.0948 33 1 2.7695 -3.6047 1.8696 34 1 4.1198 -3.2496 -0.5852 35 1 5.5847 -1.4842 0.3960 36 1 6.6397 -1.6595 -1.0275 37 1 9.7352 -1.1563 0.8166 38 1 9.0256 -1.4719 -0.7853 39 1 9.2140 -3.6964 -0.4314 40 1 9.9242 -3.3804 1.1725 41 1 7.8605 -4.7646 1.3761 42 1 8.4404 -3.1325 3.1696 43 1 6.6737 -3.2724 2.9917 44 1 8.3076 -0.9179 2.7381 45 1 6.5420 -1.0584 2.5572 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038251156.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:06 Heat of formation + Delta-G solvation = 1.241573 kcal Electronic energy + Delta-G solvation = -25098.318527 eV Core-core repulsion = 21730.197678 eV Total energy + Delta-G solvation = -3368.120849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24510 -40.18848 -39.27932 -35.56973 -34.20999 -33.21691 -32.47883 -31.84549 -29.88812 -29.05075 -25.28506 -25.13300 -24.09939 -23.82511 -23.42665 -21.52195 -20.80334 -18.99612 -18.38458 -18.09688 -17.57503 -17.37237 -16.99020 -16.67479 -16.30358 -15.94844 -15.63373 -15.16333 -14.76643 -14.29044 -13.94903 -13.87430 -13.62065 -13.33587 -13.15004 -13.13010 -13.08810 -12.96549 -12.93239 -12.65184 -12.55274 -12.48525 -12.33021 -12.01364 -11.84074 -11.51242 -11.41400 -11.23706 -11.09138 -10.81901 -10.51107 -9.96825 -9.20534 -8.86945 -7.85449 -5.16419 1.44580 1.46469 1.53699 1.65088 2.24475 2.48935 3.00252 3.32836 3.39658 3.49401 3.65179 3.82594 3.97631 4.03677 4.05966 4.15014 4.21648 4.27442 4.33961 4.34907 4.37925 4.47688 4.61589 4.64345 4.71246 4.80256 4.87992 4.95937 5.00295 5.05247 5.07060 5.10844 5.13081 5.19632 5.21358 5.35133 5.38278 5.53629 5.63302 5.75214 5.98914 6.03774 6.16216 6.59688 6.96921 7.27901 7.67452 8.61955 9.31741 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015744 B = 0.005576 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.980769 B = 5020.401998 C = 6338.413404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.070 4.070 3 Si 0.962 3.038 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.272 1.272 7 C -0.207 4.207 8 H 0.086 0.914 9 N -0.628 5.628 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.134 3.866 15 N -0.712 5.712 16 C 0.513 3.487 17 O -0.578 6.578 18 C -0.130 4.130 19 H 0.124 0.876 20 C 0.062 3.938 21 N -0.539 5.539 22 C 0.050 3.950 23 C -0.140 4.140 24 C -0.064 4.064 25 C -0.156 4.156 26 C 0.053 3.947 27 H 0.244 0.756 28 H 0.023 0.977 29 H 0.037 0.963 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.407 0.593 35 H 0.053 0.947 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.709 -9.019 -1.713 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.262 4.262 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.229 1.229 6 H -0.198 1.198 7 C -0.336 4.336 8 H 0.104 0.896 9 N -0.355 5.355 10 C 0.025 3.975 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.089 0.911 14 C 0.009 3.991 15 N -0.362 5.362 16 C 0.300 3.700 17 O -0.459 6.459 18 C -0.153 4.153 19 H 0.141 0.859 20 C -0.068 4.068 21 N -0.260 5.260 22 C -0.078 4.078 23 C -0.179 4.179 24 C -0.084 4.084 25 C -0.195 4.195 26 C -0.076 4.076 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.055 0.945 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.242 0.758 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.108 0.892 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 16.732 -8.506 -1.027 18.798 hybrid contribution -0.340 0.583 -0.065 0.678 sum 16.392 -7.923 -1.092 18.239 Atomic orbital electron populations 1.69993 1.06245 1.25059 1.59193 1.25455 0.96329 1.00335 1.04108 0.85307 0.77715 0.80335 0.77470 1.21186 1.22873 1.19757 1.19283 0.90655 0.82932 1.40738 0.89614 1.46439 1.03175 0.99937 1.85941 1.22198 0.87180 0.91697 0.96462 1.23552 0.95281 0.97849 1.00338 1.22659 0.93207 0.84660 0.96771 0.91093 1.21489 0.83032 0.98735 0.95832 1.45982 1.06107 1.61262 1.22823 1.21062 0.85849 0.77796 0.85246 1.90586 1.87694 1.45594 1.22037 1.22100 0.92020 0.99629 1.01528 0.85858 1.22234 0.94861 0.89073 1.00603 1.62477 1.03364 1.56327 1.03784 1.22348 0.90042 0.93547 1.01833 1.22256 0.96374 0.97406 1.01824 1.20880 0.93483 0.99995 0.94025 1.22384 1.02918 0.96185 0.98024 1.22166 1.01665 0.95041 0.88681 0.94686 0.95899 0.94451 0.88776 0.90602 0.90445 0.94472 0.75780 0.92801 0.87713 0.89643 0.89222 0.89854 0.90222 0.90609 0.90855 0.92095 0.89219 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.52 11.40 21.65 0.25 -57.27 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.96 46.15 29.55 68.60 2.03 48.18 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 6 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.21 -11.00 10.51 84.03 0.88 -10.12 16 8 H 0.09 4.30 7.49 -2.91 -0.02 4.28 16 9 N -0.63 -30.05 3.59 -690.85 -2.48 -32.52 16 10 C 0.15 6.86 7.52 86.44 0.65 7.51 16 11 C -0.13 -4.52 7.86 31.24 0.25 -4.28 16 12 C 0.13 4.80 4.33 45.09 0.20 4.99 16 13 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 14 C 0.13 4.64 5.54 86.38 0.48 5.12 16 15 N -0.71 -22.63 5.12 -463.06 -2.37 -25.00 16 16 C 0.51 16.22 6.59 87.65 0.58 16.80 16 17 O -0.58 -22.05 13.73 -3.04 -0.04 -22.09 16 18 C -0.13 -3.10 2.59 -11.38 -0.03 -3.13 16 19 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 20 C 0.06 1.57 5.62 86.34 0.49 2.05 16 21 N -0.54 -13.23 5.22 -895.16 -4.67 -17.90 16 22 C 0.05 0.86 6.10 86.35 0.53 1.39 16 23 C -0.14 -2.21 5.76 30.77 0.18 -2.04 16 24 C -0.06 -1.44 2.59 -10.41 -0.03 -1.47 16 25 C -0.16 -4.05 5.42 30.77 0.17 -3.89 16 26 C 0.05 1.38 6.09 86.34 0.53 1.91 16 27 H 0.24 14.49 8.31 -92.71 -0.77 13.71 16 28 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.04 1.96 7.18 -2.39 -0.02 1.94 16 30 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 12.15 8.27 -92.71 -0.77 11.39 16 35 H 0.05 1.75 7.47 -2.38 -0.02 1.73 16 36 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 42 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 43 H 0.06 2.04 5.58 -2.39 -0.01 2.02 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -68.67 346.45 -1.76 -70.43 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 0.20 Total: 24.79 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 5.32 Total: 11.38 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -9.27 Total: -132.69 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.04 Total: -22.09 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -68.67 -1.76 -70.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038251156.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.671 kcal (2) G-P(sol) polarization free energy of solvation -68.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds