Wall clock time and date at job start Tue Mar 31 2020 07:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 119.99896 * 2 1 4 4 H 1.48503 * 109.47145 * 270.00448 * 3 2 1 5 5 H 1.48502 * 109.47139 * 30.00337 * 3 2 1 6 6 H 1.48494 * 109.47082 * 150.00290 * 3 2 1 7 7 C 1.38816 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00003 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05595 * 359.97438 * 9 7 2 11 11 C 1.53504 * 88.04678 * 152.88568 * 10 9 7 12 12 C 1.47063 * 136.05595 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.46602 * 92.24646 * 12 9 7 14 14 C 1.53003 * 113.46841 * 321.86344 * 12 9 7 15 15 N 1.46497 * 109.47012 * 74.50727 * 14 12 9 16 16 C 1.34769 * 120.00426 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99595 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00746 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.57654 * 59.73098 * 18 16 15 20 20 C 1.53145 * 109.57457 * 299.33860 * 18 16 15 21 21 N 1.46903 * 109.37003 * 240.18258 * 20 18 16 22 22 C 1.46944 * 111.05943 * 298.01045 * 21 20 18 23 23 C 1.53124 * 109.35216 * 61.96059 * 22 21 20 24 24 C 1.53384 * 109.58448 * 179.97438 * 18 16 15 25 25 C 1.53388 * 108.59682 * 60.84458 * 24 18 16 26 26 C 1.46948 * 111.05650 * 62.00787 * 21 20 18 27 27 H 0.97000 * 119.99893 * 359.97438 * 1 2 3 28 28 H 1.09002 * 113.46793 * 267.69540 * 10 9 7 29 29 H 1.08999 * 113.46805 * 38.07907 * 10 9 7 30 30 H 1.09000 * 114.20388 * 139.68671 * 11 10 9 31 31 H 1.08999 * 114.20382 * 272.51056 * 11 10 9 32 32 H 1.08999 * 109.46829 * 194.50310 * 14 12 9 33 33 H 1.09000 * 109.47081 * 314.50786 * 14 12 9 34 34 H 0.97004 * 119.99784 * 359.97438 * 15 14 12 35 35 H 1.08998 * 109.48938 * 0.15248 * 20 18 16 36 36 H 1.08998 * 109.48898 * 120.21246 * 20 18 16 37 37 H 1.09000 * 109.48959 * 302.00139 * 22 21 20 38 38 H 1.08997 * 109.51297 * 181.93804 * 22 21 20 39 39 H 1.09002 * 109.57777 * 240.24508 * 23 22 21 40 40 H 1.08995 * 109.57738 * 119.86343 * 23 22 21 41 41 H 1.09002 * 110.10741 * 299.41022 * 24 18 16 42 42 H 1.09002 * 109.57416 * 178.81499 * 25 24 18 43 43 H 1.09007 * 109.57803 * 299.19530 * 25 24 18 44 44 H 1.08999 * 109.49189 * 58.00630 * 26 21 20 45 45 H 1.08997 * 109.49055 * 178.05817 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.0877 -2.7948 0.0004 11 6 0.3397 -4.0923 -0.6998 12 6 1.6800 -3.8153 -0.0005 13 1 1.7466 -4.2461 0.9986 14 6 2.8982 -4.1407 -0.8672 15 7 4.1153 -3.6901 -0.1877 16 6 5.3180 -3.8725 -0.7679 17 8 5.3926 -4.4101 -1.8525 18 6 6.5701 -3.4096 -0.0686 19 1 6.6596 -3.9152 0.8929 20 6 6.5062 -1.8950 0.1489 21 7 7.6337 -1.2555 -0.5423 22 6 8.9177 -1.7169 0.0031 23 6 9.0500 -3.2263 -0.2181 24 6 7.7931 -3.7344 -0.9355 25 6 7.6579 -2.9910 -2.2703 26 6 7.5644 -1.4872 -1.9918 27 1 -0.4850 0.8401 0.0004 28 1 -0.4929 -2.9540 0.9997 29 1 -0.7230 -2.1583 -0.6155 30 1 -0.1760 -4.9837 -0.3426 31 1 0.3797 -4.0213 -1.7867 32 1 2.9507 -5.2171 -1.0308 33 1 2.8080 -3.6313 -1.8267 34 1 4.0555 -3.2598 0.6797 35 1 5.5684 -1.5094 -0.2512 36 1 6.5633 -1.6781 1.2155 37 1 8.9579 -1.5010 1.0708 38 1 9.7344 -1.2022 -0.5031 39 1 9.1495 -3.7291 0.7439 40 1 9.9279 -3.4300 -0.8312 41 1 7.8625 -4.8101 -1.0975 42 1 8.5302 -3.1942 -2.8915 43 1 6.7559 -3.3238 -2.7841 44 1 6.6194 -1.1039 -2.3766 45 1 8.3917 -0.9741 -2.4821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038251158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:08 Heat of formation + Delta-G solvation = 26.065442 kcal Electronic energy + Delta-G solvation = -25111.464260 eV Core-core repulsion = 21744.419854 eV Total energy + Delta-G solvation = -3367.044406 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17022 -38.85590 -37.88865 -34.14858 -32.27134 -32.19466 -31.39235 -30.89797 -28.05796 -27.50944 -23.92457 -23.49071 -23.06385 -22.89076 -21.82362 -20.19472 -19.23405 -17.64782 -17.21581 -16.60495 -16.44944 -16.33899 -15.39407 -15.21199 -15.00213 -14.47034 -13.96521 -13.55748 -13.15800 -13.08326 -12.94227 -12.78210 -12.28615 -12.15958 -12.12528 -12.04826 -11.72855 -11.53684 -11.47297 -11.14350 -11.00954 -10.95271 -10.78608 -10.56572 -10.34591 -10.22076 -9.97090 -9.85128 -9.40953 -9.15127 -8.82587 -8.56605 -8.19537 -6.91699 -5.78314 -3.11171 2.93597 3.39049 3.44882 3.45679 3.53537 3.97623 4.42269 4.47065 4.64011 4.82804 5.01735 5.11149 5.12958 5.15955 5.22950 5.26796 5.36393 5.40071 5.43361 5.54908 5.56353 5.72035 5.76297 5.80843 5.89808 5.94301 5.95978 6.08610 6.12345 6.16310 6.19369 6.30625 6.37706 6.45591 6.58035 6.71292 6.90945 7.05465 7.08434 7.21113 7.37353 7.56009 7.90731 7.95820 8.57559 9.01015 9.68911 10.61322 11.38786 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.005604 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.272132 B = 4995.628845 C = 6321.113386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.214 4.214 8 H 0.080 0.920 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.047 0.953 14 C 0.122 3.878 15 N -0.712 5.712 16 C 0.516 3.484 17 O -0.548 6.548 18 C -0.140 4.140 19 H 0.095 0.905 20 C 0.059 3.941 21 N -0.527 5.527 22 C 0.051 3.949 23 C -0.150 4.150 24 C -0.063 4.063 25 C -0.159 4.159 26 C 0.051 3.949 27 H 0.253 0.747 28 H 0.024 0.976 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.403 0.597 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.096 0.904 44 H 0.076 0.924 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.967 -7.642 0.952 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.341 4.341 8 H 0.098 0.902 9 N -0.326 5.326 10 C 0.026 3.974 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.065 0.935 14 C -0.002 4.002 15 N -0.362 5.362 16 C 0.302 3.698 17 O -0.427 6.427 18 C -0.163 4.163 19 H 0.113 0.887 20 C -0.070 4.070 21 N -0.246 5.246 22 C -0.077 4.077 23 C -0.189 4.189 24 C -0.083 4.083 25 C -0.198 4.198 26 C -0.078 4.078 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.237 0.763 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.997 -7.081 0.270 15.689 hybrid contribution 0.432 0.204 0.499 0.691 sum 14.429 -6.877 0.768 16.003 Atomic orbital electron populations 1.69824 1.05019 1.25304 1.56342 1.24767 0.95617 0.97437 1.02453 0.86208 0.78730 0.83657 0.77758 1.21550 1.21727 1.20377 1.18823 0.89947 0.81294 1.44071 0.90214 1.45661 1.02566 0.98537 1.85878 1.22023 0.88748 0.90196 0.96470 1.23691 0.96939 0.99050 1.00353 1.22446 0.92032 0.87823 0.95779 0.93549 1.21785 0.83231 0.98052 0.97175 1.45999 1.05986 1.60795 1.23422 1.20430 0.84767 0.78713 0.85850 1.90588 1.86999 1.43912 1.21177 1.22098 0.93913 0.99891 1.00385 0.88697 1.22291 0.95544 0.89048 1.00132 1.62481 1.02129 1.55997 1.04028 1.22218 0.91917 0.93040 1.00533 1.22307 0.97927 0.97944 1.00746 1.20859 0.92281 1.00354 0.94775 1.22479 1.04056 0.96129 0.97120 1.22258 1.02712 0.94884 0.87920 0.93684 0.95777 0.90996 0.92382 0.90246 0.92466 0.91198 0.76299 0.89297 0.89747 0.90682 0.90749 0.91740 0.91493 0.90130 0.92279 0.88552 0.90534 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.75 11.51 55.49 0.64 -26.11 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.21 -5.62 10.55 -15.06 -0.16 -5.78 16 8 H 0.08 1.99 7.50 -52.49 -0.39 1.60 16 9 N -0.60 -14.35 3.65 -176.73 -0.65 -15.00 16 10 C 0.15 3.43 7.39 -8.50 -0.06 3.36 16 11 C -0.16 -2.91 8.04 -26.11 -0.21 -3.12 16 12 C 0.13 2.40 4.11 -72.29 -0.30 2.10 16 13 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 14 C 0.12 2.18 5.53 -4.04 -0.02 2.15 16 15 N -0.71 -11.74 5.10 -60.30 -0.31 -12.05 16 16 C 0.52 8.38 6.59 -10.99 -0.07 8.31 16 17 O -0.55 -10.42 13.73 5.55 0.08 -10.34 16 18 C -0.14 -1.82 2.60 -91.50 -0.24 -2.06 16 19 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 20 C 0.06 0.80 5.62 -3.75 -0.02 0.78 16 21 N -0.53 -6.96 5.22 -234.23 -1.22 -8.18 16 22 C 0.05 0.54 6.09 -3.74 -0.02 0.52 16 23 C -0.15 -1.49 5.75 -26.47 -0.15 -1.64 16 24 C -0.06 -0.78 2.59 -90.02 -0.23 -1.01 16 25 C -0.16 -2.12 5.43 -26.41 -0.14 -2.26 16 26 C 0.05 0.67 6.10 -3.68 -0.02 0.65 16 27 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 1.83 7.12 -51.93 -0.37 1.46 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.40 6.38 8.29 -40.82 -0.34 6.04 16 35 H 0.09 1.45 7.47 -51.93 -0.39 1.06 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 1.04 8.13 -51.93 -0.42 0.62 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 1.57 5.56 -51.93 -0.29 1.28 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -30.52 346.47 -10.69 -41.21 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -7.68 Total: 6.64 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: -1.75 Total: 1.75 kcal Atomic # 7 Polarization: -59.80 SS G_CDS: -1.54 Total: -61.34 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.52 -10.69 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038251158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.280 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds