Wall clock time and date at job start Tue Mar 31 2020 07:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 119.99896 * 2 1 4 4 H 1.48503 * 109.47145 * 270.00448 * 3 2 1 5 5 H 1.48502 * 109.47139 * 30.00337 * 3 2 1 6 6 H 1.48494 * 109.47082 * 150.00290 * 3 2 1 7 7 C 1.38816 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00003 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99783 * 359.97438 * 7 2 1 10 10 C 1.47066 * 136.05595 * 359.97438 * 9 7 2 11 11 C 1.53504 * 88.04678 * 152.88568 * 10 9 7 12 12 C 1.47063 * 136.05595 * 180.02562 * 9 7 2 13 13 H 1.09003 * 113.46602 * 92.24646 * 12 9 7 14 14 C 1.53003 * 113.46841 * 321.86344 * 12 9 7 15 15 N 1.46497 * 109.47012 * 74.50727 * 14 12 9 16 16 C 1.34769 * 120.00426 * 180.02562 * 15 14 12 17 17 O 1.21285 * 119.99595 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00746 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.57654 * 59.73098 * 18 16 15 20 20 C 1.53145 * 109.57457 * 299.33860 * 18 16 15 21 21 N 1.46903 * 109.37003 * 240.18258 * 20 18 16 22 22 C 1.46944 * 111.05943 * 298.01045 * 21 20 18 23 23 C 1.53124 * 109.35216 * 61.96059 * 22 21 20 24 24 C 1.53384 * 109.58448 * 179.97438 * 18 16 15 25 25 C 1.53388 * 108.59682 * 60.84458 * 24 18 16 26 26 C 1.46948 * 111.05650 * 62.00787 * 21 20 18 27 27 H 0.97000 * 119.99893 * 359.97438 * 1 2 3 28 28 H 1.09002 * 113.46793 * 267.69540 * 10 9 7 29 29 H 1.08999 * 113.46805 * 38.07907 * 10 9 7 30 30 H 1.09000 * 114.20388 * 139.68671 * 11 10 9 31 31 H 1.08999 * 114.20382 * 272.51056 * 11 10 9 32 32 H 1.08999 * 109.46829 * 194.50310 * 14 12 9 33 33 H 1.09000 * 109.47081 * 314.50786 * 14 12 9 34 34 H 0.97004 * 119.99784 * 359.97438 * 15 14 12 35 35 H 1.08998 * 109.48938 * 0.15248 * 20 18 16 36 36 H 1.08998 * 109.48898 * 120.21246 * 20 18 16 37 37 H 1.09000 * 109.48959 * 302.00139 * 22 21 20 38 38 H 1.08997 * 109.51297 * 181.93804 * 22 21 20 39 39 H 1.09002 * 109.57777 * 240.24508 * 23 22 21 40 40 H 1.08995 * 109.57738 * 119.86343 * 23 22 21 41 41 H 1.09002 * 110.10741 * 299.41022 * 24 18 16 42 42 H 1.09002 * 109.57416 * 178.81499 * 25 24 18 43 43 H 1.09007 * 109.57803 * 299.19530 * 25 24 18 44 44 H 1.08999 * 109.49189 * 58.00630 * 26 21 20 45 45 H 1.08997 * 109.49055 * 178.05817 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5476 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.0877 -2.7948 0.0004 11 6 0.3397 -4.0923 -0.6998 12 6 1.6800 -3.8153 -0.0005 13 1 1.7466 -4.2461 0.9986 14 6 2.8982 -4.1407 -0.8672 15 7 4.1153 -3.6901 -0.1877 16 6 5.3180 -3.8725 -0.7679 17 8 5.3926 -4.4101 -1.8525 18 6 6.5701 -3.4096 -0.0686 19 1 6.6596 -3.9152 0.8929 20 6 6.5062 -1.8950 0.1489 21 7 7.6337 -1.2555 -0.5423 22 6 8.9177 -1.7169 0.0031 23 6 9.0500 -3.2263 -0.2181 24 6 7.7931 -3.7344 -0.9355 25 6 7.6579 -2.9910 -2.2703 26 6 7.5644 -1.4872 -1.9918 27 1 -0.4850 0.8401 0.0004 28 1 -0.4929 -2.9540 0.9997 29 1 -0.7230 -2.1583 -0.6155 30 1 -0.1760 -4.9837 -0.3426 31 1 0.3797 -4.0213 -1.7867 32 1 2.9507 -5.2171 -1.0308 33 1 2.8080 -3.6313 -1.8267 34 1 4.0555 -3.2598 0.6797 35 1 5.5684 -1.5094 -0.2512 36 1 6.5633 -1.6781 1.2155 37 1 8.9579 -1.5010 1.0708 38 1 9.7344 -1.2022 -0.5031 39 1 9.1495 -3.7291 0.7439 40 1 9.9279 -3.4300 -0.8312 41 1 7.8625 -4.8101 -1.0975 42 1 8.5302 -3.1942 -2.8915 43 1 6.7559 -3.3238 -2.7841 44 1 6.6194 -1.1039 -2.3766 45 1 8.3917 -0.9741 -2.4821 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038251158.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:08 Heat of formation + Delta-G solvation = 4.755077 kcal Electronic energy + Delta-G solvation = -25112.388347 eV Core-core repulsion = 21744.419854 eV Total energy + Delta-G solvation = -3367.968492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24341 -40.30277 -39.37007 -35.56902 -34.24736 -33.21719 -32.47641 -31.83520 -29.94529 -29.01203 -25.38967 -25.09161 -24.08649 -23.82057 -23.31790 -21.52977 -20.91692 -18.98905 -18.39189 -18.10468 -17.56813 -17.37175 -16.99737 -16.67257 -16.29160 -15.94791 -15.64793 -15.13133 -14.76491 -14.28660 -13.94582 -13.87346 -13.63012 -13.39408 -13.15051 -13.12886 -13.08323 -12.96417 -12.92939 -12.71682 -12.57317 -12.48923 -12.29504 -12.01147 -11.83366 -11.62601 -11.39275 -11.13708 -11.03871 -10.84546 -10.49705 -9.96217 -9.20361 -8.88261 -7.86561 -5.17858 1.44822 1.46673 1.53642 1.65185 2.25139 2.48254 3.00443 3.35665 3.41585 3.50097 3.65604 3.82684 3.93194 4.02765 4.05887 4.16129 4.21772 4.27484 4.33964 4.34676 4.38311 4.47595 4.61717 4.64936 4.69101 4.80612 4.88029 4.96118 5.00503 5.04702 5.07084 5.10270 5.13096 5.19960 5.21202 5.34128 5.38403 5.53747 5.60932 5.74354 5.97896 6.04244 6.15949 6.59750 6.94963 7.27903 7.65677 8.64949 9.31182 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015680 B = 0.005604 C = 0.004429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.272132 B = 4995.628845 C = 6321.113386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.069 4.069 3 Si 0.962 3.038 4 H -0.296 1.296 5 H -0.298 1.298 6 H -0.262 1.262 7 C -0.202 4.202 8 H 0.088 0.912 9 N -0.628 5.628 10 C 0.142 3.858 11 C -0.136 4.136 12 C 0.134 3.866 13 H 0.070 0.930 14 C 0.132 3.868 15 N -0.712 5.712 16 C 0.513 3.487 17 O -0.578 6.578 18 C -0.131 4.131 19 H 0.123 0.877 20 C 0.062 3.938 21 N -0.539 5.539 22 C 0.050 3.950 23 C -0.140 4.140 24 C -0.064 4.064 25 C -0.156 4.156 26 C 0.053 3.947 27 H 0.244 0.756 28 H 0.023 0.977 29 H 0.034 0.966 30 H 0.099 0.901 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.407 0.593 35 H 0.054 0.946 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.568 -8.982 2.282 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.792 3.208 4 H -0.224 1.224 5 H -0.224 1.224 6 H -0.187 1.187 7 C -0.331 4.331 8 H 0.106 0.894 9 N -0.354 5.354 10 C 0.017 3.983 11 C -0.174 4.174 12 C 0.028 3.972 13 H 0.087 0.913 14 C 0.007 3.993 15 N -0.362 5.362 16 C 0.300 3.700 17 O -0.459 6.459 18 C -0.154 4.154 19 H 0.140 0.860 20 C -0.067 4.067 21 N -0.259 5.259 22 C -0.078 4.078 23 C -0.179 4.179 24 C -0.084 4.084 25 C -0.195 4.195 26 C -0.076 4.076 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.242 0.758 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.633 -8.455 1.619 18.729 hybrid contribution -0.373 0.549 0.038 0.664 sum 16.260 -7.907 1.657 18.156 Atomic orbital electron populations 1.70000 1.06302 1.25121 1.58990 1.25478 0.96343 1.00381 1.03997 0.85303 0.78181 0.80241 0.77105 1.22418 1.22448 1.18653 1.19186 0.90537 0.82345 1.40999 0.89434 1.45973 1.03566 1.00013 1.85835 1.22040 0.87864 0.92071 0.96351 1.23512 0.95942 0.98121 0.99844 1.22587 0.92920 0.84790 0.96939 0.91269 1.21539 0.83579 0.98702 0.95460 1.45989 1.05828 1.60848 1.23502 1.21057 0.85530 0.77877 0.85492 1.90585 1.87469 1.45294 1.22557 1.22123 0.92298 0.99621 1.01328 0.85961 1.22220 0.94454 0.89136 1.00931 1.62482 1.03283 1.56474 1.03675 1.22350 0.90563 0.93502 1.01368 1.22250 0.96706 0.97393 1.01519 1.20890 0.93275 0.99957 0.94249 1.22390 1.02933 0.96214 0.97927 1.22193 1.01889 0.94915 0.88572 0.94659 0.95890 0.94707 0.88224 0.90499 0.90556 0.94466 0.75802 0.92722 0.87863 0.89296 0.89598 0.89923 0.90204 0.90647 0.90828 0.92066 0.93427 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.51 11.51 21.65 0.25 -57.26 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 3 Si 0.96 45.96 29.55 68.60 2.03 47.99 16 4 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.20 -10.71 10.55 84.03 0.89 -9.83 16 8 H 0.09 4.38 7.50 -2.91 -0.02 4.36 16 9 N -0.63 -30.02 3.65 -713.06 -2.60 -32.63 16 10 C 0.14 6.49 7.39 83.18 0.61 7.10 16 11 C -0.14 -4.65 8.04 30.99 0.25 -4.40 16 12 C 0.13 4.84 4.11 41.86 0.17 5.02 16 13 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.13 4.58 5.53 86.38 0.48 5.06 16 15 N -0.71 -22.74 5.10 -463.07 -2.36 -25.10 16 16 C 0.51 16.25 6.59 87.66 0.58 16.83 16 17 O -0.58 -22.04 13.73 -3.04 -0.04 -22.08 16 18 C -0.13 -3.14 2.60 -11.36 -0.03 -3.17 16 19 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 20 C 0.06 1.58 5.62 86.35 0.49 2.07 16 21 N -0.54 -13.17 5.22 -894.98 -4.67 -17.84 16 22 C 0.05 0.86 6.09 86.34 0.53 1.39 16 23 C -0.14 -2.22 5.75 30.77 0.18 -2.05 16 24 C -0.06 -1.44 2.59 -10.41 -0.03 -1.47 16 25 C -0.16 -4.02 5.43 30.80 0.17 -3.86 16 26 C 0.05 1.36 6.10 86.37 0.53 1.89 16 27 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.03 1.83 7.12 -2.39 -0.02 1.81 16 30 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 32 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.41 12.29 8.29 -92.71 -0.77 11.52 16 35 H 0.05 1.77 7.47 -2.39 -0.02 1.75 16 36 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 42 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 2.04 5.56 -2.38 -0.01 2.02 16 44 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 45 H 0.09 1.97 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -68.42 346.47 -1.93 -70.35 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 0.20 Total: 25.41 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: 5.27 Total: 11.16 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -9.39 Total: -132.83 kcal Atomic # 8 Polarization: -22.04 SS G_CDS: -0.04 Total: -22.08 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.42 -1.93 -70.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038251158.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.107 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds