Wall clock time and date at job start Tue Mar 31 2020 07:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48493 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47130 * 299.99887 * 3 2 1 6 6 H 1.48500 * 109.47292 * 59.99423 * 3 2 1 7 7 C 1.38807 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00675 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99627 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49358 * 0.02562 * 9 7 2 11 11 C 1.53944 * 86.11767 * 155.35674 * 10 9 7 12 12 C 1.47578 * 134.49098 * 179.97438 * 9 7 2 13 13 H 1.09008 * 113.86630 * 90.33477 * 12 9 7 14 14 C 1.52998 * 113.77242 * 318.95092 * 12 9 7 15 15 N 1.46498 * 109.47333 * 78.50353 * 14 12 9 16 16 C 1.34772 * 119.99949 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99765 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00100 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.57928 * 299.74432 * 18 16 15 20 20 C 1.53130 * 109.57426 * 60.00245 * 18 16 15 21 21 N 1.46939 * 109.35334 * 119.99138 * 20 18 16 22 22 C 1.46912 * 111.05799 * 61.96034 * 21 20 18 23 23 C 1.53136 * 109.37150 * 298.00832 * 22 21 20 24 24 C 1.53388 * 108.93432 * 359.92432 * 23 22 21 25 25 C 1.53390 * 108.59638 * 301.11053 * 24 23 22 26 26 C 1.46949 * 110.97246 * 297.91575 * 21 20 18 27 27 H 0.97005 * 119.99934 * 0.02562 * 1 2 3 28 28 H 1.08999 * 113.76757 * 41.05279 * 10 9 7 29 29 H 1.09000 * 113.76283 * 269.65651 * 10 9 7 30 30 H 1.09000 * 113.74122 * 269.25991 * 11 10 9 31 31 H 1.08996 * 113.73826 * 137.95537 * 11 10 9 32 32 H 1.08998 * 109.46720 * 318.49691 * 14 12 9 33 33 H 1.09000 * 109.46976 * 198.50476 * 14 12 9 34 34 H 0.96994 * 120.00046 * 359.97438 * 15 14 12 35 35 H 1.08998 * 109.48836 * 0.02944 * 20 18 16 36 36 H 1.09001 * 109.50577 * 239.96606 * 20 18 16 37 37 H 1.09000 * 109.48681 * 178.03272 * 22 21 20 38 38 H 1.08996 * 109.50320 * 57.99100 * 22 21 20 39 39 H 1.09002 * 109.57901 * 119.79297 * 23 22 21 40 40 H 1.09001 * 109.57906 * 240.05601 * 23 22 21 41 41 H 1.09001 * 110.11287 * 179.67518 * 24 23 22 42 42 H 1.09003 * 109.57370 * 178.81714 * 25 24 23 43 43 H 1.08997 * 109.57639 * 299.06402 * 25 24 23 44 44 H 1.09002 * 109.49069 * 182.05556 * 26 21 20 45 45 H 1.09000 * 109.48296 * 302.12740 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1032 -2.7574 -0.0004 11 6 0.3476 -4.0832 -0.6399 12 6 1.7203 -3.8101 0.0005 13 1 1.8326 -4.2366 0.9974 14 6 2.9027 -4.1220 -0.9190 15 7 4.1498 -3.7187 -0.2646 16 6 5.3289 -3.8997 -0.8918 17 8 5.3574 -4.3960 -1.9981 18 6 6.6118 -3.4844 -0.2190 19 1 6.5881 -2.4135 -0.0167 20 6 6.7729 -4.2515 1.0965 21 7 8.0111 -5.0414 1.0510 22 6 9.1870 -4.1720 0.9098 23 6 9.0943 -3.4030 -0.4112 24 6 7.8034 -3.8084 -1.1336 25 6 7.8341 -5.3224 -1.3776 26 6 7.9595 -6.0387 -0.0269 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7163 -2.1394 -0.6563 29 1 -0.5277 -2.8727 0.9969 30 1 0.3605 -4.0628 -1.7296 31 1 -0.1589 -4.9597 -0.2360 32 1 2.7896 -3.5744 -1.8546 33 1 2.9301 -5.1919 -1.1253 34 1 4.1270 -3.3215 0.6200 35 1 5.9215 -4.9177 1.2356 36 1 6.8219 -3.5458 1.9257 37 1 10.0915 -4.7803 0.9139 38 1 9.2196 -3.4664 1.7399 39 1 9.0794 -2.3318 -0.2100 40 1 9.9540 -3.6453 -1.0360 41 1 7.7151 -3.2669 -2.0755 42 1 6.9132 -5.6314 -1.8723 43 1 8.6883 -5.5738 -2.0062 44 1 8.8725 -6.6341 -0.0157 45 1 7.0982 -6.6902 0.1214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038251160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:10 Heat of formation + Delta-G solvation = 21.857459 kcal Electronic energy + Delta-G solvation = -24770.334533 eV Core-core repulsion = 21403.107656 eV Total energy + Delta-G solvation = -3367.226877 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.21991 -38.81633 -37.77858 -34.17093 -32.28680 -32.22247 -31.46446 -30.98630 -28.02391 -27.54582 -24.02127 -23.39015 -23.15678 -22.99115 -21.97187 -20.22283 -19.13418 -17.69510 -17.27755 -16.57702 -16.53456 -16.41930 -15.45950 -15.23113 -15.05108 -14.52016 -13.90884 -13.59764 -13.29976 -13.16296 -12.96825 -12.79161 -12.36664 -12.27254 -12.23261 -12.14664 -11.69445 -11.55981 -11.44501 -11.13545 -11.06594 -11.04170 -10.77019 -10.56493 -10.42131 -10.28299 -9.98738 -9.76402 -9.59850 -9.20047 -8.82695 -8.59839 -8.32282 -6.91543 -5.78969 -3.11375 2.93037 3.35194 3.39808 3.43179 3.50465 3.84450 4.40126 4.41426 4.59249 4.78235 4.94253 5.04600 5.05475 5.07914 5.13590 5.15502 5.31466 5.35828 5.39410 5.52980 5.60309 5.65701 5.70242 5.71610 5.82916 5.88412 5.90249 5.99419 6.06381 6.08872 6.13981 6.29731 6.35754 6.40761 6.60418 6.70867 6.88264 6.91908 6.93647 7.22767 7.39380 7.57235 7.89017 7.96096 8.56152 9.01817 9.68737 10.57154 11.37827 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.004512 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.395604 B = 6203.855601 C = 7157.940614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.078 0.922 9 N -0.602 5.602 10 C 0.159 3.841 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.124 3.876 15 N -0.713 5.713 16 C 0.518 3.482 17 O -0.547 6.547 18 C -0.142 4.142 19 H 0.099 0.901 20 C 0.062 3.938 21 N -0.528 5.528 22 C 0.052 3.948 23 C -0.152 4.152 24 C -0.064 4.064 25 C -0.159 4.159 26 C 0.052 3.948 27 H 0.252 0.748 28 H 0.073 0.927 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.402 0.598 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.403 -10.471 1.774 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.738 3.262 4 H -0.206 1.206 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.346 4.346 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.362 5.362 16 C 0.304 3.696 17 O -0.426 6.426 18 C -0.165 4.165 19 H 0.117 0.883 20 C -0.067 4.067 21 N -0.248 5.248 22 C -0.077 4.077 23 C -0.191 4.191 24 C -0.083 4.083 25 C -0.197 4.197 26 C -0.076 4.076 27 H 0.063 0.937 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.236 0.764 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.101 0.899 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.477 -10.742 1.467 18.087 hybrid contribution 0.323 1.825 -0.265 1.872 sum 14.800 -8.917 1.202 17.321 Atomic orbital electron populations 1.69827 1.04955 1.25123 1.56709 1.24754 0.95613 0.97391 1.02627 0.86131 0.78678 0.84134 0.77296 1.20621 1.21743 1.21773 1.18969 0.90123 0.81918 1.43546 0.90394 1.46075 1.02289 0.98560 1.85947 1.22201 0.87946 0.89613 0.96898 1.23764 0.96202 0.98982 1.00549 1.22495 0.92377 0.87659 0.95633 0.93338 1.21736 0.82449 0.98562 0.97313 1.45986 1.06049 1.62822 1.21378 1.20390 0.84979 0.78409 0.85862 1.90594 1.87246 1.44794 1.19977 1.22151 0.93685 1.02654 0.98042 0.88298 1.22243 0.93117 0.96546 0.94830 1.62535 1.02380 1.15440 1.44402 1.22208 0.93471 0.95548 0.96436 1.22313 0.97843 1.00833 0.98081 1.20915 0.92278 0.97061 0.98069 1.22489 1.04130 0.94771 0.98358 1.22270 1.02277 0.94276 0.88823 0.93740 0.90843 0.95563 0.90550 0.92806 0.91102 0.92322 0.76375 0.90027 0.89677 0.90706 0.90586 0.91551 0.91445 0.89897 0.88665 0.92212 0.90909 0.90854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 11.38 55.49 0.63 -26.16 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.22 -5.78 10.51 -15.06 -0.16 -5.94 16 8 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 9 N -0.60 -14.48 3.58 -170.77 -0.61 -15.10 16 10 C 0.16 3.61 7.51 -2.97 -0.02 3.59 16 11 C -0.16 -2.82 7.86 -25.82 -0.20 -3.03 16 12 C 0.13 2.38 4.33 -66.88 -0.29 2.09 16 13 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 14 C 0.12 2.21 5.54 -4.04 -0.02 2.18 16 15 N -0.71 -11.64 5.28 -60.30 -0.32 -11.96 16 16 C 0.52 8.35 6.60 -10.99 -0.07 8.28 16 17 O -0.55 -10.39 13.78 5.55 0.08 -10.31 16 18 C -0.14 -1.83 2.59 -91.36 -0.24 -2.07 16 19 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 20 C 0.06 0.70 5.60 -3.74 -0.02 0.68 16 21 N -0.53 -5.73 5.22 -234.12 -1.22 -6.95 16 22 C 0.05 0.48 6.10 -3.75 -0.02 0.46 16 23 C -0.15 -1.48 5.74 -26.46 -0.15 -1.63 16 24 C -0.06 -0.78 2.61 -89.87 -0.23 -1.01 16 25 C -0.16 -1.92 5.44 -26.32 -0.14 -2.06 16 26 C 0.05 0.56 6.10 -3.59 -0.02 0.54 16 27 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 28 H 0.07 1.87 7.16 -51.93 -0.37 1.50 16 29 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.40 6.24 8.37 -40.82 -0.34 5.90 16 35 H 0.08 0.96 7.46 -51.93 -0.39 0.58 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 42 H 0.09 1.41 5.61 -51.93 -0.29 1.12 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -30.72 347.06 -10.63 -41.35 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.70 Total: 5.26 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.70 Total: 1.78 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: -1.52 Total: -60.17 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.72 -10.63 -41.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038251160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.210 kcal (2) G-P(sol) polarization free energy of solvation -30.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds