Wall clock time and date at job start Tue Mar 31 2020 07:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99884 * 2 1 4 4 H 1.48493 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47130 * 299.99887 * 3 2 1 6 6 H 1.48500 * 109.47292 * 59.99423 * 3 2 1 7 7 C 1.38807 * 120.00528 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00675 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99627 * 0.02562 * 7 2 1 10 10 C 1.47582 * 134.49358 * 0.02562 * 9 7 2 11 11 C 1.53944 * 86.11767 * 155.35674 * 10 9 7 12 12 C 1.47578 * 134.49098 * 179.97438 * 9 7 2 13 13 H 1.09008 * 113.86630 * 90.33477 * 12 9 7 14 14 C 1.52998 * 113.77242 * 318.95092 * 12 9 7 15 15 N 1.46498 * 109.47333 * 78.50353 * 14 12 9 16 16 C 1.34772 * 119.99949 * 179.97438 * 15 14 12 17 17 O 1.21284 * 119.99765 * 0.02562 * 16 15 14 18 18 C 1.50695 * 120.00100 * 179.97438 * 16 15 14 19 19 H 1.09002 * 109.57928 * 299.74432 * 18 16 15 20 20 C 1.53130 * 109.57426 * 60.00245 * 18 16 15 21 21 N 1.46939 * 109.35334 * 119.99138 * 20 18 16 22 22 C 1.46912 * 111.05799 * 61.96034 * 21 20 18 23 23 C 1.53136 * 109.37150 * 298.00832 * 22 21 20 24 24 C 1.53388 * 108.93432 * 359.92432 * 23 22 21 25 25 C 1.53390 * 108.59638 * 301.11053 * 24 23 22 26 26 C 1.46949 * 110.97246 * 297.91575 * 21 20 18 27 27 H 0.97005 * 119.99934 * 0.02562 * 1 2 3 28 28 H 1.08999 * 113.76757 * 41.05279 * 10 9 7 29 29 H 1.09000 * 113.76283 * 269.65651 * 10 9 7 30 30 H 1.09000 * 113.74122 * 269.25991 * 11 10 9 31 31 H 1.08996 * 113.73826 * 137.95537 * 11 10 9 32 32 H 1.08998 * 109.46720 * 318.49691 * 14 12 9 33 33 H 1.09000 * 109.46976 * 198.50476 * 14 12 9 34 34 H 0.96994 * 120.00046 * 359.97438 * 15 14 12 35 35 H 1.08998 * 109.48836 * 0.02944 * 20 18 16 36 36 H 1.09001 * 109.50577 * 239.96606 * 20 18 16 37 37 H 1.09000 * 109.48681 * 178.03272 * 22 21 20 38 38 H 1.08996 * 109.50320 * 57.99100 * 22 21 20 39 39 H 1.09002 * 109.57901 * 119.79297 * 23 22 21 40 40 H 1.09001 * 109.57906 * 240.05601 * 23 22 21 41 41 H 1.09001 * 110.11287 * 179.67518 * 24 23 22 42 42 H 1.09003 * 109.57370 * 178.81714 * 25 24 23 43 43 H 1.08997 * 109.57639 * 299.06402 * 25 24 23 44 44 H 1.09002 * 109.49069 * 182.05556 * 26 21 20 45 45 H 1.09000 * 109.48296 * 302.12740 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1032 -2.7574 -0.0004 11 6 0.3476 -4.0832 -0.6399 12 6 1.7203 -3.8101 0.0005 13 1 1.8326 -4.2366 0.9974 14 6 2.9027 -4.1220 -0.9190 15 7 4.1498 -3.7187 -0.2646 16 6 5.3289 -3.8997 -0.8918 17 8 5.3574 -4.3960 -1.9981 18 6 6.6118 -3.4844 -0.2190 19 1 6.5881 -2.4135 -0.0167 20 6 6.7729 -4.2515 1.0965 21 7 8.0111 -5.0414 1.0510 22 6 9.1870 -4.1720 0.9098 23 6 9.0943 -3.4030 -0.4112 24 6 7.8034 -3.8084 -1.1336 25 6 7.8341 -5.3224 -1.3776 26 6 7.9595 -6.0387 -0.0269 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7163 -2.1394 -0.6563 29 1 -0.5277 -2.8727 0.9969 30 1 0.3605 -4.0628 -1.7296 31 1 -0.1589 -4.9597 -0.2360 32 1 2.7896 -3.5744 -1.8546 33 1 2.9301 -5.1919 -1.1253 34 1 4.1270 -3.3215 0.6200 35 1 5.9215 -4.9177 1.2356 36 1 6.8219 -3.5458 1.9257 37 1 10.0915 -4.7803 0.9139 38 1 9.2196 -3.4664 1.7399 39 1 9.0794 -2.3318 -0.2100 40 1 9.9540 -3.6453 -1.0360 41 1 7.7151 -3.2669 -2.0755 42 1 6.9132 -5.6314 -1.8723 43 1 8.6883 -5.5738 -2.0062 44 1 8.8725 -6.6341 -0.0157 45 1 7.0982 -6.6902 0.1214 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038251160.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:10 Heat of formation + Delta-G solvation = 0.583804 kcal Electronic energy + Delta-G solvation = -24771.257028 eV Core-core repulsion = 21403.107656 eV Total energy + Delta-G solvation = -3368.149372 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22148 -40.19600 -39.29290 -35.58836 -34.21733 -33.19997 -32.47712 -31.81700 -29.89839 -29.04920 -25.29541 -25.13323 -24.07318 -23.81649 -23.42518 -21.53562 -20.80992 -18.99548 -18.37455 -18.07943 -17.59022 -17.36833 -17.02377 -16.66038 -16.33794 -15.92687 -15.62544 -15.13378 -14.84287 -14.22976 -13.94672 -13.87924 -13.64768 -13.34439 -13.13733 -13.12373 -13.06337 -12.98311 -12.89966 -12.68889 -12.57695 -12.50575 -12.27749 -12.00159 -11.82815 -11.51483 -11.37211 -11.31221 -11.10040 -10.84609 -10.50137 -9.98240 -9.21770 -8.88029 -7.86686 -5.18156 1.42864 1.44094 1.52549 1.65141 2.22652 2.47423 3.01519 3.32507 3.38816 3.47779 3.64192 3.84319 3.97049 4.03128 4.07365 4.16082 4.22955 4.27225 4.34531 4.35310 4.40466 4.48160 4.61380 4.64301 4.71200 4.82640 4.87207 4.95809 5.01587 5.05336 5.08785 5.10450 5.13876 5.18882 5.19889 5.33797 5.38915 5.53072 5.62224 5.75204 5.98443 6.06020 6.13378 6.58910 6.95878 7.27095 7.65928 8.60687 9.30437 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.004512 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.395604 B = 6203.855601 C = 7157.940614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.071 4.071 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.300 1.300 6 H -0.293 1.293 7 C -0.210 4.210 8 H 0.085 0.915 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.132 4.132 12 C 0.133 3.867 13 H 0.072 0.928 14 C 0.135 3.865 15 N -0.711 5.711 16 C 0.514 3.486 17 O -0.579 6.579 18 C -0.136 4.136 19 H 0.104 0.896 20 C 0.066 3.934 21 N -0.530 5.530 22 C 0.051 3.949 23 C -0.144 4.144 24 C -0.068 4.068 25 C -0.154 4.154 26 C 0.055 3.945 27 H 0.244 0.756 28 H 0.037 0.963 29 H 0.023 0.977 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.037 0.963 33 H 0.077 0.923 34 H 0.407 0.593 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.703 -11.604 2.983 20.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.264 4.264 3 Si 0.795 3.205 4 H -0.189 1.189 5 H -0.228 1.228 6 H -0.221 1.221 7 C -0.339 4.339 8 H 0.103 0.897 9 N -0.355 5.355 10 C 0.024 3.976 11 C -0.170 4.170 12 C 0.027 3.973 13 H 0.090 0.910 14 C 0.010 3.990 15 N -0.361 5.361 16 C 0.302 3.698 17 O -0.459 6.459 18 C -0.159 4.159 19 H 0.122 0.878 20 C -0.063 4.063 21 N -0.249 5.249 22 C -0.077 4.077 23 C -0.183 4.183 24 C -0.088 4.088 25 C -0.193 4.193 26 C -0.073 4.073 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.243 0.757 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.813 -11.908 2.694 20.778 hybrid contribution -0.386 2.085 -0.681 2.227 sum 16.427 -9.823 2.013 19.245 Atomic orbital electron populations 1.70008 1.06292 1.25045 1.59121 1.25501 0.96396 1.00472 1.04025 0.85192 0.78407 0.80473 0.76425 1.18896 1.22802 1.22052 1.19328 0.90667 0.83032 1.40830 0.89711 1.46419 1.03225 0.99984 1.85913 1.22167 0.87172 0.91771 0.96454 1.23561 0.95283 0.97853 1.00343 1.22656 0.93206 0.84597 0.96797 0.91040 1.21483 0.82867 0.99083 0.95609 1.45968 1.05763 1.62867 1.21537 1.21009 0.85807 0.77525 0.85468 1.90590 1.87741 1.46140 1.21470 1.22187 0.91914 1.03033 0.98799 0.87843 1.22249 0.93373 0.96581 0.94123 1.62567 1.02630 1.15631 1.44111 1.22319 0.93275 0.95723 0.96347 1.22269 0.96512 1.01250 0.98253 1.20928 0.93488 0.96966 0.97394 1.22405 1.02916 0.94855 0.99164 1.22260 1.02867 0.94248 0.87948 0.94651 0.94421 0.95922 0.90586 0.88775 0.94405 0.90486 0.75746 0.90662 0.88020 0.89215 0.89441 0.91015 0.90372 0.92065 0.91767 0.91228 0.89079 0.91678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.26 11.38 21.65 0.25 -57.01 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.21 -11.13 10.51 84.03 0.88 -10.24 16 8 H 0.09 4.26 7.80 -2.91 -0.02 4.24 16 9 N -0.63 -30.07 3.58 -694.19 -2.48 -32.55 16 10 C 0.15 6.84 7.51 86.48 0.65 7.49 16 11 C -0.13 -4.53 7.86 31.24 0.25 -4.28 16 12 C 0.13 4.80 4.33 45.08 0.20 5.00 16 13 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 14 C 0.13 4.64 5.54 86.38 0.48 5.12 16 15 N -0.71 -22.44 5.28 -463.08 -2.44 -24.88 16 16 C 0.51 16.29 6.60 87.66 0.58 16.87 16 17 O -0.58 -22.13 13.78 -3.04 -0.04 -22.17 16 18 C -0.14 -3.31 2.59 -11.27 -0.03 -3.34 16 19 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 20 C 0.07 1.33 5.60 86.34 0.48 1.82 16 21 N -0.53 -9.99 5.22 -894.61 -4.67 -14.66 16 22 C 0.05 0.78 6.10 86.35 0.53 1.30 16 23 C -0.14 -2.41 5.74 30.77 0.18 -2.24 16 24 C -0.07 -1.58 2.61 -10.31 -0.03 -1.61 16 25 C -0.15 -3.57 5.44 30.86 0.17 -3.40 16 26 C 0.06 1.08 6.10 86.43 0.53 1.61 16 27 H 0.24 14.39 8.31 -92.70 -0.77 13.61 16 28 H 0.04 1.98 7.16 -2.39 -0.02 1.96 16 29 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 2.63 8.10 -2.39 -0.02 2.61 16 31 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.41 11.97 8.37 -92.71 -0.78 11.19 16 35 H 0.07 1.62 7.46 -2.39 -0.02 1.61 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 42 H 0.06 1.91 5.61 -2.39 -0.01 1.89 16 43 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -67.70 347.06 -1.85 -69.55 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.19 Total: 23.68 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.32 Total: 10.55 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -9.35 Total: -129.10 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: -0.04 Total: -22.17 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -67.70 -1.85 -69.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038251160.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.134 kcal (2) G-P(sol) polarization free energy of solvation -67.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds