Wall clock time and date at job start Tue Mar 31 2020 07:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 110.91535 * 2 1 4 4 C 1.34778 * 120.00108 * 297.55135 * 3 2 1 5 5 O 1.21284 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00162 * 179.97438 * 4 3 2 7 7 C 1.56251 * 116.69077 * 297.57848 * 6 4 3 8 8 C 1.55911 * 102.63539 * 199.96455 * 7 6 4 9 9 N 1.49518 * 105.39579 * 0.47332 * 8 7 6 10 10 C 1.49523 * 105.92146 * 287.96893 * 9 8 7 11 11 C 1.54660 * 105.28268 * 71.25908 * 10 9 8 12 12 C 1.50473 * 102.03542 * 34.37799 * 9 8 7 13 13 C 1.55158 * 111.00727 * 123.90498 * 2 1 3 14 14 C 1.54316 * 102.94139 * 153.57557 * 13 2 1 15 15 N 1.47020 * 107.27568 * 337.80546 * 14 13 2 16 16 C 1.36938 * 125.65236 * 178.97773 * 15 14 13 17 17 H 1.07994 * 120.00035 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99774 * 359.95644 * 16 15 14 19 19 N 1.31617 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46602 * 60.00170 * 20 18 16 22 22 H 1.48496 * 109.46844 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46930 * 300.00140 * 20 18 16 24 24 C 1.47422 * 108.70191 * 358.94070 * 15 14 13 25 25 H 1.09004 * 109.47256 * 182.44497 * 1 2 3 26 26 H 1.08998 * 109.47483 * 302.44509 * 1 2 3 27 27 H 1.08999 * 109.47641 * 62.44696 * 1 2 3 28 28 H 0.97001 * 119.99694 * 117.55288 * 3 2 1 29 29 H 1.08996 * 110.67034 * 319.47686 * 7 6 4 30 30 H 1.09005 * 110.66716 * 82.61206 * 7 6 4 31 31 H 1.08998 * 110.87647 * 241.14554 * 8 7 6 32 32 H 1.09001 * 109.65522 * 119.16322 * 8 7 6 33 33 H 1.09002 * 110.28073 * 190.21190 * 10 9 8 34 34 H 1.08998 * 110.28367 * 312.21349 * 10 9 8 35 35 H 1.09005 * 110.66863 * 242.22274 * 11 10 9 36 36 H 1.09000 * 110.66835 * 119.09300 * 11 10 9 37 37 H 1.08993 * 111.90853 * 188.40525 * 12 9 8 38 38 H 1.08993 * 111.90804 * 62.18943 * 12 9 8 39 39 H 1.09003 * 110.71801 * 271.94078 * 13 2 1 40 40 H 1.09003 * 110.71814 * 35.20983 * 13 2 1 41 41 H 1.09000 * 109.88340 * 97.22892 * 14 13 2 42 42 H 1.09003 * 109.88233 * 218.38857 * 14 13 2 43 43 H 0.97006 * 120.00279 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36873 * 265.28987 * 24 15 14 45 45 H 1.09005 * 110.36491 * 142.96394 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0529 1.3685 0.0000 4 6 1.7892 2.1907 -1.0348 5 8 1.1185 1.7978 -1.9658 6 6 2.3267 3.5985 -1.0346 7 6 1.8310 4.5388 0.1107 8 6 2.1236 5.9587 -0.4630 9 7 2.7165 5.7257 -1.8157 10 6 4.0914 5.1900 -1.5743 11 6 3.8811 3.7562 -1.0337 12 6 1.9776 4.4980 -2.2750 13 6 2.0862 -0.8080 1.2022 14 6 3.4674 -1.2741 0.6959 15 7 3.4271 -1.2430 -0.7735 16 6 4.4639 -1.5666 -1.6074 17 1 4.3331 -1.5118 -2.6780 18 6 5.6832 -1.9648 -1.0766 19 7 5.8425 -2.0318 0.2282 20 14 7.0974 -2.4069 -2.2142 21 1 7.4393 -1.2336 -3.0578 22 1 8.2799 -2.7971 -1.4051 23 1 6.6968 -3.5420 -3.0838 24 6 2.0852 -0.8066 -1.2004 25 1 -0.3634 -1.0268 0.0438 26 1 -0.3634 0.5513 0.8672 27 1 -0.3634 0.4753 -0.9111 28 1 2.5890 1.6828 0.7448 29 1 0.7681 4.3882 0.2993 30 1 2.4108 4.3768 1.0195 31 1 2.8287 6.4961 0.1711 32 1 1.1922 6.5180 -0.5500 33 1 4.6557 5.1633 -2.5065 34 1 4.6109 5.8011 -0.8362 35 1 4.2766 3.6646 -0.0221 36 1 4.3425 3.0238 -1.6961 37 1 2.3926 4.0955 -3.1990 38 1 0.9056 4.6763 -2.3593 39 1 2.1922 -0.1700 2.0796 40 1 1.4468 -1.6632 1.4209 41 1 4.2425 -0.5998 1.0598 42 1 3.6650 -2.2894 1.0399 43 1 6.6946 -2.3097 0.5992 44 1 1.4518 -1.6704 -1.4025 45 1 2.1559 -0.1719 -2.0838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046773527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:36 Heat of formation + Delta-G solvation = 16.642796 kcal Electronic energy + Delta-G solvation = -25376.379462 eV Core-core repulsion = 22008.926459 eV Total energy + Delta-G solvation = -3367.453002 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.10689 -39.30258 -37.07157 -33.93888 -32.12242 -30.74457 -30.71277 -29.61429 -28.66197 -28.08911 -25.67156 -23.84199 -22.67160 -22.59604 -20.79604 -20.29613 -19.48427 -18.71960 -17.14868 -16.51684 -16.14160 -15.60066 -15.38327 -14.78455 -14.60473 -14.36464 -13.69534 -13.48736 -13.24500 -12.90430 -12.84577 -12.54719 -12.27454 -12.12245 -11.91930 -11.87324 -11.70571 -11.66906 -11.51631 -11.28654 -10.89975 -10.87366 -10.74166 -10.39251 -10.36571 -10.32543 -10.10639 -9.98853 -9.65028 -9.22979 -9.15253 -8.63726 -8.52462 -6.79495 -5.70487 -3.02158 2.88732 3.40678 3.44116 3.45210 3.46439 3.76269 4.38082 4.46276 4.51196 4.75192 4.90642 4.94026 5.01099 5.11694 5.16865 5.37722 5.42426 5.46990 5.48965 5.57545 5.61530 5.63619 5.69042 5.72196 5.81163 5.87333 5.92773 6.00425 6.08768 6.13517 6.14885 6.34397 6.37976 6.39643 6.52643 6.53798 6.67631 6.83272 7.14652 7.54525 7.56266 7.79882 7.91954 8.26629 8.59608 9.24144 9.84273 10.50533 11.41530 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.005539 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.183594 B = 5054.080681 C = 6100.971020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.156 3.844 3 N -0.696 5.696 4 C 0.555 3.445 5 O -0.536 6.536 6 C -0.129 4.129 7 C -0.134 4.134 8 C 0.013 3.987 9 N -0.468 5.468 10 C 0.013 3.987 11 C -0.135 4.135 12 C 0.041 3.959 13 C -0.147 4.147 14 C 0.179 3.821 15 N -0.602 5.602 16 C -0.221 4.221 17 H 0.075 0.925 18 C -0.009 4.009 19 N -0.925 5.925 20 Si 0.910 3.090 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.131 3.869 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.070 0.930 28 H 0.396 0.604 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.251 0.749 44 H 0.024 0.976 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 13.491 3.391 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 N -0.345 5.345 4 C 0.339 3.661 5 O -0.413 6.413 6 C -0.134 4.134 7 C -0.173 4.173 8 C -0.116 4.116 9 N -0.188 5.188 10 C -0.115 4.115 11 C -0.174 4.174 12 C -0.089 4.089 13 C -0.185 4.185 14 C 0.054 3.946 15 N -0.328 5.328 16 C -0.349 4.349 17 H 0.093 0.907 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.740 3.260 21 H -0.213 1.213 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.004 3.996 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.230 0.770 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.335 13.752 2.292 16.243 hybrid contribution 1.259 -0.963 0.543 1.676 sum -7.076 12.789 2.836 14.888 Atomic orbital electron populations 1.21983 0.94442 1.01988 1.02281 1.21495 0.92463 0.80868 0.98266 1.45761 1.53852 1.12583 1.22294 1.19225 0.79713 0.85017 0.82107 1.90655 1.39369 1.76308 1.34980 1.23783 0.97399 0.93464 0.98715 1.23403 1.01905 0.94752 0.97272 1.23807 1.00784 0.96040 0.90938 1.69991 1.02560 1.28413 1.17836 1.23604 0.92491 0.93790 1.01653 1.23189 0.92952 0.98395 1.02849 1.24314 1.00027 0.87759 0.96755 1.23230 1.00558 0.98874 0.95870 1.21134 0.89914 0.99831 0.83754 1.44419 1.07786 1.78877 1.01742 1.19007 0.89370 1.37607 0.88948 0.90704 1.24746 0.97712 1.02045 0.95975 1.69935 1.24171 1.54074 1.09169 0.86229 0.81911 0.78320 0.79517 1.21289 1.21635 1.21197 1.21887 0.87547 0.94853 0.95270 0.91861 0.93206 0.91102 0.76983 0.90669 0.90693 0.90327 0.89996 0.89690 0.90427 0.90529 0.90035 0.88986 0.89194 0.91881 0.90907 0.93734 0.93898 0.93845 0.95807 0.92637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.59 37.15 0.32 -1.93 16 2 C 0.16 2.73 0.82 -129.67 -0.11 2.62 16 3 N -0.70 -11.17 5.17 -45.62 -0.24 -11.41 16 4 C 0.55 9.09 6.68 -10.99 -0.07 9.02 16 5 O -0.54 -10.42 13.37 5.55 0.07 -10.35 16 6 C -0.13 -1.67 1.37 -149.93 -0.20 -1.88 16 7 C -0.13 -1.36 6.14 -23.43 -0.14 -1.50 16 8 C 0.01 0.13 6.64 -0.81 -0.01 0.12 16 9 N -0.47 -5.41 6.94 -221.23 -1.54 -6.95 16 10 C 0.01 0.15 6.61 -1.49 -0.01 0.14 16 11 C -0.13 -1.71 6.04 -24.12 -0.15 -1.86 16 12 C 0.04 0.52 6.05 0.44 0.00 0.52 16 13 C -0.15 -2.58 5.99 -24.90 -0.15 -2.73 16 14 C 0.18 4.18 5.36 -3.07 -0.02 4.17 16 15 N -0.60 -15.34 3.39 -170.08 -0.58 -15.92 16 16 C -0.22 -6.23 10.28 -15.06 -0.15 -6.38 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 19 N -0.93 -26.85 10.31 55.49 0.57 -26.27 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.13 2.88 6.11 -2.53 -0.02 2.87 16 25 H 0.06 0.90 8.11 -51.93 -0.42 0.48 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.17 6.54 -51.93 -0.34 0.83 16 28 H 0.40 5.73 8.49 -40.82 -0.35 5.39 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.68 7.86 -51.93 -0.41 0.28 16 31 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 35 H 0.08 0.91 7.86 -51.93 -0.41 0.50 16 36 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 40 H 0.07 1.20 8.01 -51.93 -0.42 0.78 16 41 H 0.04 1.14 7.38 -51.93 -0.38 0.76 16 42 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 43 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.02 0.53 8.04 -51.93 -0.42 0.11 16 45 H 0.06 1.32 6.32 -51.93 -0.33 0.99 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -31.29 344.91 -9.91 -41.20 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -7.58 Total: 4.38 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: -0.80 Total: 2.82 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -1.78 Total: -60.55 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.29 -9.91 -41.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046773527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.841 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds