Wall clock time and date at job start Tue Mar 31 2020 07:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46501 * 110.91535 * 2 1 4 4 C 1.34778 * 120.00108 * 297.55135 * 3 2 1 5 5 O 1.21284 * 119.99711 * 0.02562 * 4 3 2 6 6 C 1.50693 * 120.00162 * 179.97438 * 4 3 2 7 7 C 1.56251 * 116.69077 * 297.57848 * 6 4 3 8 8 C 1.55911 * 102.63539 * 199.96455 * 7 6 4 9 9 N 1.49518 * 105.39579 * 0.47332 * 8 7 6 10 10 C 1.49523 * 105.92146 * 287.96893 * 9 8 7 11 11 C 1.54660 * 105.28268 * 71.25908 * 10 9 8 12 12 C 1.50473 * 102.03542 * 34.37799 * 9 8 7 13 13 C 1.55158 * 111.00727 * 123.90498 * 2 1 3 14 14 C 1.54316 * 102.94139 * 153.57557 * 13 2 1 15 15 N 1.47020 * 107.27568 * 337.80546 * 14 13 2 16 16 C 1.36938 * 125.65236 * 178.97773 * 15 14 13 17 17 H 1.07994 * 120.00035 * 179.97438 * 16 15 14 18 18 C 1.38811 * 119.99774 * 359.95644 * 16 15 14 19 19 N 1.31617 * 120.00082 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99981 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46602 * 60.00170 * 20 18 16 22 22 H 1.48496 * 109.46844 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46930 * 300.00140 * 20 18 16 24 24 C 1.47422 * 108.70191 * 358.94070 * 15 14 13 25 25 H 1.09004 * 109.47256 * 182.44497 * 1 2 3 26 26 H 1.08998 * 109.47483 * 302.44509 * 1 2 3 27 27 H 1.08999 * 109.47641 * 62.44696 * 1 2 3 28 28 H 0.97001 * 119.99694 * 117.55288 * 3 2 1 29 29 H 1.08996 * 110.67034 * 319.47686 * 7 6 4 30 30 H 1.09005 * 110.66716 * 82.61206 * 7 6 4 31 31 H 1.08998 * 110.87647 * 241.14554 * 8 7 6 32 32 H 1.09001 * 109.65522 * 119.16322 * 8 7 6 33 33 H 1.09002 * 110.28073 * 190.21190 * 10 9 8 34 34 H 1.08998 * 110.28367 * 312.21349 * 10 9 8 35 35 H 1.09005 * 110.66863 * 242.22274 * 11 10 9 36 36 H 1.09000 * 110.66835 * 119.09300 * 11 10 9 37 37 H 1.08993 * 111.90853 * 188.40525 * 12 9 8 38 38 H 1.08993 * 111.90804 * 62.18943 * 12 9 8 39 39 H 1.09003 * 110.71801 * 271.94078 * 13 2 1 40 40 H 1.09003 * 110.71814 * 35.20983 * 13 2 1 41 41 H 1.09000 * 109.88340 * 97.22892 * 14 13 2 42 42 H 1.09003 * 109.88233 * 218.38857 * 14 13 2 43 43 H 0.97006 * 120.00279 * 180.02562 * 19 18 16 44 44 H 1.08998 * 110.36873 * 265.28987 * 24 15 14 45 45 H 1.09005 * 110.36491 * 142.96394 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0529 1.3685 0.0000 4 6 1.7892 2.1907 -1.0348 5 8 1.1185 1.7978 -1.9658 6 6 2.3267 3.5985 -1.0346 7 6 1.8310 4.5388 0.1107 8 6 2.1236 5.9587 -0.4630 9 7 2.7165 5.7257 -1.8157 10 6 4.0914 5.1900 -1.5743 11 6 3.8811 3.7562 -1.0337 12 6 1.9776 4.4980 -2.2750 13 6 2.0862 -0.8080 1.2022 14 6 3.4674 -1.2741 0.6959 15 7 3.4271 -1.2430 -0.7735 16 6 4.4639 -1.5666 -1.6074 17 1 4.3331 -1.5118 -2.6780 18 6 5.6832 -1.9648 -1.0766 19 7 5.8425 -2.0318 0.2282 20 14 7.0974 -2.4069 -2.2142 21 1 7.4393 -1.2336 -3.0578 22 1 8.2799 -2.7971 -1.4051 23 1 6.6968 -3.5420 -3.0838 24 6 2.0852 -0.8066 -1.2004 25 1 -0.3634 -1.0268 0.0438 26 1 -0.3634 0.5513 0.8672 27 1 -0.3634 0.4753 -0.9111 28 1 2.5890 1.6828 0.7448 29 1 0.7681 4.3882 0.2993 30 1 2.4108 4.3768 1.0195 31 1 2.8287 6.4961 0.1711 32 1 1.1922 6.5180 -0.5500 33 1 4.6557 5.1633 -2.5065 34 1 4.6109 5.8011 -0.8362 35 1 4.2766 3.6646 -0.0221 36 1 4.3425 3.0238 -1.6961 37 1 2.3926 4.0955 -3.1990 38 1 0.9056 4.6763 -2.3593 39 1 2.1922 -0.1700 2.0796 40 1 1.4468 -1.6632 1.4209 41 1 4.2425 -0.5998 1.0598 42 1 3.6650 -2.2894 1.0399 43 1 6.6946 -2.3097 0.5992 44 1 1.4518 -1.6704 -1.4025 45 1 2.1559 -0.1719 -2.0838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046773527.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:35 Heat of formation + Delta-G solvation = -6.687997 kcal Electronic energy + Delta-G solvation = -25377.391161 eV Core-core repulsion = 22008.926459 eV Total energy + Delta-G solvation = -3368.464701 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14992 -40.65955 -38.63313 -35.68439 -33.77040 -32.20585 -31.60142 -31.00307 -30.26698 -29.03790 -27.53230 -25.53235 -23.98773 -23.47317 -22.17566 -21.68918 -20.83592 -20.04440 -18.92480 -17.88391 -17.12504 -17.08906 -16.66393 -16.27565 -16.07735 -15.83886 -15.46990 -15.01485 -14.33403 -14.16020 -13.95851 -13.78628 -13.67951 -13.53263 -13.42859 -13.15430 -13.10454 -12.85465 -12.77211 -12.68885 -12.40752 -12.26464 -12.15719 -12.07662 -11.98391 -11.71402 -11.64964 -11.51320 -11.26240 -10.72333 -10.58348 -10.06618 -9.98422 -8.87841 -7.87443 -5.20865 1.41690 1.43935 1.50543 1.61261 2.19174 2.46419 2.82156 3.30518 3.42060 3.48781 3.55989 3.69576 3.81905 3.96438 4.03270 4.05451 4.14225 4.18073 4.31845 4.49205 4.52077 4.62929 4.64268 4.68999 4.77678 4.80915 4.84903 4.86215 4.91781 4.91924 4.94124 5.01626 5.02684 5.07028 5.15196 5.34573 5.40403 5.47543 5.63614 5.67729 5.68887 5.76823 6.18443 6.63448 7.10349 7.31051 7.76060 8.40404 9.22141 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015507 B = 0.005539 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.183594 B = 5054.080681 C = 6100.971020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.166 3.834 3 N -0.692 5.692 4 C 0.550 3.450 5 O -0.572 6.572 6 C -0.132 4.132 7 C -0.123 4.123 8 C 0.015 3.985 9 N -0.473 5.473 10 C 0.018 3.982 11 C -0.132 4.132 12 C 0.040 3.960 13 C -0.128 4.128 14 C 0.186 3.814 15 N -0.619 5.619 16 C -0.242 4.242 17 H 0.066 0.934 18 C -0.056 4.056 19 N -0.945 5.945 20 Si 0.971 3.029 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.281 1.281 24 C 0.128 3.872 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.054 0.946 28 H 0.406 0.594 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.018 0.982 42 H 0.007 0.993 43 H 0.248 0.752 44 H 0.022 0.978 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.780 15.170 5.000 18.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.079 3.921 3 N -0.342 5.342 4 C 0.337 3.663 5 O -0.451 6.451 6 C -0.137 4.137 7 C -0.162 4.162 8 C -0.113 4.113 9 N -0.193 5.193 10 C -0.110 4.110 11 C -0.171 4.171 12 C -0.089 4.089 13 C -0.166 4.166 14 C 0.061 3.939 15 N -0.345 5.345 16 C -0.371 4.371 17 H 0.083 0.917 18 C -0.250 4.250 19 N -0.593 5.593 20 Si 0.799 3.201 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.207 1.207 24 C 0.001 3.999 25 H 0.093 0.907 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.242 0.758 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.036 0.964 42 H 0.026 0.974 43 H 0.057 0.943 44 H 0.040 0.960 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -9.044 15.451 3.915 18.326 hybrid contribution 1.480 -1.514 -0.025 2.118 sum -7.564 13.937 3.890 16.327 Atomic orbital electron populations 1.21903 0.91903 1.03102 1.02776 1.21363 0.94101 0.81038 0.95607 1.45740 1.53849 1.11913 1.22707 1.19791 0.78987 0.86210 0.81359 1.90638 1.41058 1.77275 1.36155 1.23710 0.97514 0.91921 1.00574 1.23396 1.02411 0.93901 0.96485 1.23915 1.01798 0.95807 0.89815 1.69979 1.02561 1.27250 1.19473 1.23612 0.92572 0.92843 1.02006 1.23157 0.92527 0.98678 1.02731 1.24240 1.00155 0.88515 0.96003 1.23104 0.96841 1.00014 0.96683 1.20931 0.92921 0.97348 0.82664 1.44652 1.08439 1.78818 1.02604 1.19246 0.90744 1.37957 0.89191 0.91653 1.25476 0.99815 1.02212 0.97452 1.70130 1.24326 1.54486 1.10397 0.85273 0.78892 0.78075 0.77821 1.20778 1.21348 1.20703 1.21990 0.86339 0.94988 0.96555 0.90710 0.90321 0.92703 0.75841 0.90120 0.88996 0.88282 0.88877 0.90304 0.88006 0.89317 0.93633 0.91163 0.89004 0.88397 0.89078 0.96405 0.97443 0.94269 0.96016 0.95226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.59 71.98 0.62 -3.25 16 2 C 0.17 5.62 0.82 5.00 0.00 5.62 16 3 N -0.69 -21.47 5.17 -416.65 -2.16 -23.63 16 4 C 0.55 17.92 6.68 87.65 0.59 18.50 16 5 O -0.57 -22.70 13.37 -3.04 -0.04 -22.74 16 6 C -0.13 -3.32 1.37 -49.21 -0.07 -3.39 16 7 C -0.12 -2.12 6.14 32.73 0.20 -1.92 16 8 C 0.02 0.24 6.64 86.80 0.58 0.81 16 9 N -0.47 -10.06 6.94 -853.84 -5.93 -15.99 16 10 C 0.02 0.38 6.61 86.36 0.57 0.95 16 11 C -0.13 -3.28 6.04 32.29 0.20 -3.08 16 12 C 0.04 1.02 6.05 87.06 0.53 1.55 16 13 C -0.13 -4.24 5.99 31.78 0.19 -4.05 16 14 C 0.19 8.83 5.36 86.73 0.47 9.29 16 15 N -0.62 -32.43 3.39 -692.00 -2.35 -34.78 16 16 C -0.24 -14.11 10.28 84.03 0.86 -13.25 16 17 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 18 C -0.06 -3.23 5.49 84.86 0.47 -2.76 16 19 N -0.94 -56.00 10.31 21.65 0.22 -55.78 16 20 Si 0.97 46.65 29.55 68.60 2.03 48.67 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 24 C 0.13 5.72 6.11 86.86 0.53 6.25 16 25 H 0.07 1.92 8.11 -2.39 -0.02 1.90 16 26 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.74 6.54 -2.39 -0.02 1.73 16 28 H 0.41 10.97 8.49 -92.71 -0.79 10.18 16 29 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.09 1.30 7.86 -2.38 -0.02 1.28 16 31 H 0.10 1.20 7.69 -2.39 -0.02 1.18 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.28 16 33 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.10 1.63 7.69 -2.39 -0.02 1.61 16 35 H 0.09 1.95 7.86 -2.38 -0.02 1.94 16 36 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.10 2.61 8.05 -2.39 -0.02 2.59 16 40 H 0.09 2.74 8.01 -2.39 -0.02 2.72 16 41 H 0.02 0.93 7.38 -2.39 -0.02 0.91 16 42 H 0.01 0.40 7.51 -2.39 -0.02 0.38 16 43 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 44 H 0.02 0.99 8.04 -2.39 -0.02 0.97 16 45 H 0.03 1.47 6.32 -2.38 -0.02 1.46 16 Total: -1.00 -70.65 344.91 -2.31 -72.96 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.19 Total: 19.99 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: 5.73 Total: 11.28 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -10.21 Total: -130.17 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.04 Total: -22.74 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -70.65 -2.31 -72.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046773527.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.273 kcal (2) G-P(sol) polarization free energy of solvation -70.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds