Wall clock time and date at job start Tue Mar 31 2020 07:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 110.88668 * 2 1 4 4 C 1.34781 * 120.00063 * 56.11910 * 3 2 1 5 5 O 1.21287 * 119.99688 * 0.02562 * 4 3 2 6 6 C 1.50691 * 120.00078 * 179.97438 * 4 3 2 7 7 C 1.56241 * 116.69184 * 297.41686 * 6 4 3 8 8 C 1.56950 * 102.16623 * 200.71123 * 7 6 4 9 9 N 1.49523 * 105.46940 * 358.87388 * 8 7 6 10 10 C 1.49522 * 105.92427 * 289.06104 * 9 8 7 11 11 C 1.54659 * 105.28253 * 71.25652 * 10 9 8 12 12 C 1.50469 * 102.03284 * 35.47015 * 9 8 7 13 13 C 1.55157 * 111.00143 * 236.12136 * 2 1 3 14 14 C 1.54325 * 102.94184 * 206.42607 * 13 2 1 15 15 N 1.47022 * 107.26948 * 22.19107 * 14 13 2 16 16 C 1.36945 * 125.64832 * 181.02381 * 15 14 13 17 17 H 1.07997 * 119.99756 * 180.02562 * 16 15 14 18 18 C 1.38805 * 119.99878 * 0.02562 * 16 15 14 19 19 N 1.31624 * 120.00257 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99929 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.47187 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47141 * 300.00154 * 20 18 16 23 23 H 1.48498 * 109.47018 * 60.00200 * 20 18 16 24 24 C 1.47423 * 108.70390 * 1.29074 * 15 14 13 25 25 H 1.08996 * 109.47690 * 183.87582 * 1 2 3 26 26 H 1.08999 * 109.46882 * 303.87987 * 1 2 3 27 27 H 1.09005 * 109.47260 * 63.87826 * 1 2 3 28 28 H 0.97000 * 120.00036 * 236.11880 * 3 2 1 29 29 H 1.09001 * 110.67301 * 319.47838 * 7 6 4 30 30 H 1.09001 * 110.66999 * 82.61158 * 7 6 4 31 31 H 1.09004 * 109.92499 * 240.00430 * 8 7 6 32 32 H 1.09002 * 110.46448 * 118.02549 * 8 7 6 33 33 H 1.09004 * 110.27749 * 312.30905 * 10 9 8 34 34 H 1.08992 * 110.36059 * 190.25202 * 10 9 8 35 35 H 1.09003 * 110.66896 * 242.22425 * 11 10 9 36 36 H 1.08999 * 110.66793 * 119.09350 * 11 10 9 37 37 H 1.09000 * 111.90854 * 188.40315 * 12 9 8 38 38 H 1.08997 * 111.91157 * 62.19210 * 12 9 8 39 39 H 1.09000 * 110.72140 * 88.06437 * 13 2 1 40 40 H 1.08999 * 110.87600 * 324.85779 * 13 2 1 41 41 H 1.09002 * 109.88274 * 262.77538 * 14 13 2 42 42 H 1.08996 * 109.88444 * 141.60894 * 14 13 2 43 43 H 0.97001 * 119.99885 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.37068 * 94.48354 * 24 15 14 45 45 H 1.09005 * 110.36651 * 216.80519 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0523 1.3687 0.0000 4 6 1.6846 2.2303 0.9690 5 8 0.9217 1.8723 1.8413 6 6 2.2223 3.6380 0.9694 7 6 3.7684 3.7987 1.1270 8 6 3.8977 5.2808 1.6270 9 7 2.4994 5.8080 1.6776 10 6 2.0675 5.9625 0.2544 11 6 1.8783 4.5210 -0.2729 12 6 1.7222 4.5948 2.1113 13 6 2.0861 -0.8074 -1.2026 14 6 3.4674 -1.2740 -0.6966 15 7 3.4270 -1.2434 0.7728 16 6 4.4640 -1.5675 1.6065 17 1 4.3332 -1.5130 2.6772 18 6 5.6830 -1.9658 1.0756 19 7 5.8425 -2.0317 -0.2293 20 14 7.0977 -2.4071 2.2129 21 1 8.2800 -2.7977 1.4037 22 1 7.4398 -1.2334 3.0557 23 1 6.6975 -3.5418 3.0833 24 6 2.0835 -0.8125 1.2000 25 1 -0.3634 -1.0252 0.0695 26 1 -0.3633 0.5729 0.8532 27 1 -0.3634 0.4525 -0.9227 28 1 2.6627 1.6549 -0.6974 29 1 4.1554 3.0943 1.8633 30 1 4.2687 3.6674 0.1675 31 1 4.4946 5.8599 0.9224 32 1 4.3487 5.3104 2.6190 33 1 2.8377 6.4770 -0.3203 34 1 1.1272 6.5109 0.2009 35 1 2.5676 4.3175 -1.0924 36 1 0.8472 4.3584 -0.5868 37 1 0.6462 4.7614 2.0602 38 1 2.0291 4.2463 3.0974 39 1 2.1922 -0.1691 -2.0797 40 1 1.4478 -1.6627 -1.4246 41 1 4.2426 -0.5994 -1.0602 42 1 3.6649 -2.2890 -1.0410 43 1 6.6945 -2.3098 -0.6003 44 1 1.4523 -1.6787 1.3981 45 1 2.1515 -0.1810 2.0859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046773528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:37 Heat of formation + Delta-G solvation = 16.959015 kcal Electronic energy + Delta-G solvation = -25332.485630 eV Core-core repulsion = 21965.046340 eV Total energy + Delta-G solvation = -3367.439290 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.09804 -39.30057 -37.10340 -33.92994 -32.14397 -30.74826 -30.66840 -29.60823 -28.66911 -28.09977 -25.67262 -23.84003 -22.68065 -22.60758 -20.82277 -20.28348 -19.49354 -18.74856 -17.15603 -16.54766 -16.13149 -15.59526 -15.39995 -14.81155 -14.61710 -14.34596 -13.71896 -13.49630 -13.26284 -12.89685 -12.86333 -12.54902 -12.28154 -12.09014 -11.92534 -11.87978 -11.71654 -11.66829 -11.51227 -11.28039 -10.91184 -10.88073 -10.78533 -10.38839 -10.37339 -10.32739 -10.11539 -9.99993 -9.66827 -9.21814 -9.16491 -8.66731 -8.52347 -6.81072 -5.71720 -3.03681 2.85971 3.39844 3.43152 3.44525 3.45616 3.75810 4.37782 4.44104 4.50084 4.74419 4.88554 4.93464 4.99053 5.11807 5.16759 5.37564 5.41532 5.45579 5.48205 5.55765 5.61515 5.63245 5.68045 5.71965 5.79989 5.86749 5.91129 6.02349 6.07366 6.13518 6.16019 6.36024 6.36622 6.39638 6.51250 6.53533 6.68355 6.79126 7.12727 7.53042 7.55134 7.78669 7.91572 8.25258 8.57736 9.22715 9.82790 10.48942 11.40244 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.005400 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.528520 B = 5184.124661 C = 6196.781690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 N -0.695 5.695 4 C 0.554 3.446 5 O -0.537 6.537 6 C -0.130 4.130 7 C -0.134 4.134 8 C 0.013 3.987 9 N -0.468 5.468 10 C 0.014 3.986 11 C -0.136 4.136 12 C 0.042 3.958 13 C -0.147 4.147 14 C 0.178 3.822 15 N -0.602 5.602 16 C -0.222 4.222 17 H 0.075 0.925 18 C -0.009 4.009 19 N -0.925 5.925 20 Si 0.910 3.090 21 H -0.290 1.290 22 H -0.286 1.286 23 H -0.285 1.285 24 C 0.134 3.866 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.398 0.602 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.251 0.749 44 H 0.026 0.974 45 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.891 13.446 -3.282 15.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.070 3.930 3 N -0.344 5.344 4 C 0.339 3.661 5 O -0.415 6.415 6 C -0.134 4.134 7 C -0.173 4.173 8 C -0.116 4.116 9 N -0.188 5.188 10 C -0.115 4.115 11 C -0.175 4.175 12 C -0.087 4.087 13 C -0.186 4.186 14 C 0.053 3.947 15 N -0.329 5.329 16 C -0.350 4.350 17 H 0.093 0.907 18 C -0.204 4.204 19 N -0.573 5.573 20 Si 0.741 3.259 21 H -0.216 1.216 22 H -0.213 1.213 23 H -0.212 1.212 24 C 0.007 3.993 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.231 0.769 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.264 13.758 -2.272 16.209 hybrid contribution 1.378 -1.026 -0.468 1.781 sum -6.886 12.732 -2.740 14.732 Atomic orbital electron populations 1.22040 0.94284 1.02394 1.02420 1.21518 0.92660 0.80796 0.98052 1.45760 1.48284 1.11627 1.28702 1.19251 0.80598 0.84972 0.81320 1.90638 1.35935 1.78166 1.36732 1.23801 0.97689 0.93521 0.98437 1.23598 0.92863 0.97906 1.02933 1.24012 0.91891 0.93410 1.02263 1.69988 1.03189 1.30262 1.15327 1.23585 1.01916 0.95882 0.90163 1.23221 1.02524 0.95113 0.96645 1.24295 0.99353 0.87306 0.97792 1.23226 1.00524 0.98927 0.95900 1.21143 0.89941 0.99873 0.83712 1.44428 1.07622 1.79048 1.01763 1.19006 0.89380 1.37703 0.88946 0.90698 1.24749 0.97728 1.01984 0.95982 1.69938 1.24204 1.54006 1.09168 0.86224 0.81895 0.78317 0.79507 1.21626 1.21280 1.21194 1.21908 0.87603 0.94822 0.95003 0.91932 0.90342 0.93315 0.76859 0.90062 0.90403 0.90454 0.89640 0.90412 0.89872 0.90543 0.90877 0.89177 0.88972 0.91870 0.90886 0.93701 0.93882 0.93822 0.95687 0.93278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.59 37.16 0.32 -2.04 16 2 C 0.16 2.75 0.82 -129.55 -0.11 2.64 16 3 N -0.69 -11.18 5.19 -45.52 -0.24 -11.41 16 4 C 0.55 8.98 6.67 -10.99 -0.07 8.91 16 5 O -0.54 -10.27 13.40 5.55 0.07 -10.20 16 6 C -0.13 -1.67 1.36 -149.93 -0.20 -1.87 16 7 C -0.13 -1.68 6.21 -22.85 -0.14 -1.82 16 8 C 0.01 0.14 6.67 -0.22 0.00 0.14 16 9 N -0.47 -5.33 6.94 -220.52 -1.53 -6.86 16 10 C 0.01 0.13 6.61 -1.49 -0.01 0.12 16 11 C -0.14 -1.38 6.02 -24.12 -0.15 -1.52 16 12 C 0.04 0.52 6.08 0.44 0.00 0.53 16 13 C -0.15 -2.59 5.96 -24.90 -0.15 -2.74 16 14 C 0.18 4.15 5.36 -3.06 -0.02 4.14 16 15 N -0.60 -15.26 3.39 -169.94 -0.58 -15.84 16 16 C -0.22 -6.22 10.28 -15.06 -0.15 -6.38 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -26.73 10.31 55.49 0.57 -26.15 16 20 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.13 2.92 6.18 -2.41 -0.01 2.90 16 25 H 0.06 0.91 8.07 -51.93 -0.42 0.49 16 26 H 0.08 1.32 5.92 -51.93 -0.31 1.02 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.40 5.86 8.51 -40.82 -0.35 5.51 16 29 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 0.92 7.78 -51.93 -0.40 0.52 16 31 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.65 7.69 -51.93 -0.40 0.25 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.71 7.78 -51.93 -0.40 0.30 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 0.96 8.09 -51.93 -0.42 0.54 16 40 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 41 H 0.04 1.14 7.38 -51.93 -0.38 0.76 16 42 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 43 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 44 H 0.03 0.55 7.99 -51.93 -0.41 0.14 16 45 H 0.05 1.16 6.89 -51.93 -0.36 0.80 16 LS Contribution 344.88 15.07 5.20 5.20 Total: -1.00 -31.00 344.88 -9.88 -40.88 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -7.57 Total: 4.52 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -0.79 Total: 2.67 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: -1.77 Total: -60.26 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.00 -9.88 -40.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046773528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.843 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds