Wall clock time and date at job start Tue Mar 31 2020 07:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99929 * 2 1 4 4 H 1.48504 * 109.46988 * 269.27655 * 3 2 1 5 5 H 1.48497 * 109.47254 * 29.27431 * 3 2 1 6 6 H 1.48495 * 109.46878 * 149.27510 * 3 2 1 7 7 C 1.38811 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99674 * 340.44700 * 7 2 1 9 9 N 1.36931 * 120.00081 * 160.45105 * 7 2 1 10 10 C 1.47081 * 120.87914 * 331.67275 * 9 7 2 11 11 C 1.53235 * 108.52026 * 231.16456 * 10 9 7 12 12 N 1.46905 * 109.34489 * 306.17204 * 11 10 9 13 13 C 1.46895 * 111.00415 * 187.25691 * 12 11 10 14 14 H 1.09004 * 110.91233 * 297.99646 * 13 12 11 15 15 C 1.55153 * 111.00689 * 174.09495 * 13 12 11 16 16 C 1.54314 * 102.86445 * 206.22554 * 15 13 12 17 17 N 1.47029 * 107.27545 * 22.52520 * 16 15 13 18 18 C 1.34771 * 125.64536 * 180.96511 * 17 16 15 19 19 O 1.21285 * 119.99326 * 179.68752 * 18 17 16 20 20 C 1.50689 * 120.00357 * 359.69548 * 18 17 16 21 21 C 1.53010 * 117.50279 * 179.97438 * 20 18 17 22 22 C 1.52998 * 59.99918 * 107.48970 * 21 20 18 23 23 C 1.47420 * 108.70079 * 0.70184 * 17 16 15 24 24 C 1.46898 * 111.26594 * 63.10426 * 12 11 10 25 25 C 1.47075 * 120.88092 * 151.65724 * 9 7 2 26 26 H 0.97003 * 120.00063 * 359.97438 * 1 2 3 27 27 H 1.09004 * 109.62381 * 111.45674 * 10 9 7 28 28 H 1.08992 * 109.79341 * 350.97124 * 10 9 7 29 29 H 1.09005 * 109.49477 * 186.21759 * 11 10 9 30 30 H 1.09003 * 109.49752 * 66.13459 * 11 10 9 31 31 H 1.09004 * 110.71978 * 324.78372 * 15 13 12 32 32 H 1.09001 * 110.72367 * 87.87803 * 15 13 12 33 33 H 1.08998 * 109.99163 * 263.04371 * 16 15 13 34 34 H 1.09004 * 109.77101 * 141.88080 * 16 15 13 35 35 H 1.08997 * 115.56442 * 34.30509 * 20 18 17 36 36 H 1.09003 * 117.48950 * 359.97438 * 21 20 18 37 37 H 1.08993 * 117.49798 * 214.97989 * 21 20 18 38 38 H 1.09002 * 117.50142 * 107.49858 * 22 21 20 39 39 H 1.09000 * 117.49829 * 252.49121 * 22 21 20 40 40 H 1.09005 * 110.36655 * 94.94183 * 23 17 16 41 41 H 1.08998 * 110.36941 * 217.14843 * 23 17 16 42 42 H 1.08994 * 109.49519 * 56.85678 * 24 12 11 43 43 H 1.09000 * 109.49502 * 176.94081 * 24 12 11 44 44 H 1.09009 * 109.62527 * 248.54262 * 25 9 7 45 45 H 1.09002 * 109.63231 * 8.92623 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5130 2.0376 -1.4000 5 1 1.4401 2.6571 0.6846 6 1 3.5400 1.4447 0.7153 7 6 2.0103 -1.2021 -0.0005 8 1 1.5169 -2.1107 0.3121 9 7 3.3204 -1.2361 -0.3974 10 6 3.8413 -0.2596 -1.3660 11 6 4.5612 -1.0202 -2.4847 12 7 5.5707 -1.9106 -1.8963 13 6 6.3993 -2.5292 -2.9396 14 1 5.7935 -3.1476 -3.6019 15 6 7.5572 -3.3519 -2.3152 16 6 8.6312 -3.3290 -3.4230 17 7 8.3552 -2.1627 -4.2747 18 6 9.0591 -1.8032 -5.3663 19 8 8.7363 -0.8202 -5.9992 20 6 10.2469 -2.6225 -5.8006 21 6 11.0042 -2.1628 -7.0481 22 6 11.6318 -1.9865 -5.6639 23 6 7.1773 -1.4554 -3.7403 24 6 4.9481 -2.9321 -1.0438 25 6 4.2440 -2.2499 0.1340 26 1 -0.4850 0.8401 0.0004 27 1 4.5425 0.4108 -0.8690 28 1 3.0183 0.3180 -1.7868 29 1 5.0481 -0.3097 -3.1527 30 1 3.8379 -1.6113 -3.0465 31 1 7.9242 -2.8735 -1.4072 32 1 7.2371 -4.3732 -2.1089 33 1 8.5750 -4.2422 -4.0154 34 1 9.6207 -3.2353 -2.9754 35 1 10.1665 -3.6957 -5.6278 36 1 10.6429 -1.2680 -7.5549 37 1 11.4221 -2.9336 -7.6956 38 1 12.4626 -2.6412 -5.4009 39 1 11.6840 -0.9755 -5.2601 40 1 7.4884 -0.6433 -3.0830 41 1 6.5647 -1.0693 -4.5550 42 1 4.2194 -3.4966 -1.6255 43 1 5.7154 -3.6082 -0.6667 44 1 4.9840 -1.7708 0.7752 45 1 3.6855 -2.9890 0.7084 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051968004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:15 Heat of formation + Delta-G solvation = 12.889614 kcal Electronic energy + Delta-G solvation = -24166.683632 eV Core-core repulsion = 20799.067880 eV Total energy + Delta-G solvation = -3367.615752 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.40247 -40.12231 -38.44751 -36.97109 -35.90295 -33.69409 -32.25976 -31.66604 -29.98271 -28.05035 -25.73653 -25.00368 -24.31920 -23.33714 -23.05821 -21.74288 -20.98079 -19.95822 -18.91341 -18.60994 -17.72783 -17.09420 -16.61372 -16.25408 -15.93558 -15.82561 -15.67279 -15.48202 -15.16282 -14.77324 -14.43124 -14.28758 -14.26353 -13.87950 -13.64331 -13.38677 -13.34194 -12.80472 -12.68720 -12.45319 -12.43162 -12.20123 -12.12909 -11.83295 -11.71758 -11.57905 -11.52710 -11.44603 -11.43757 -10.99273 -10.73374 -9.74371 -9.44659 -8.90329 -8.19455 -5.52304 1.28320 1.39153 1.39830 1.48718 1.80899 2.39309 2.82230 2.91746 3.05430 3.27831 3.34919 3.65278 3.69967 3.84172 3.97685 4.02036 4.08888 4.18733 4.19554 4.29245 4.33300 4.40752 4.45102 4.55969 4.61495 4.71040 4.73543 4.77375 4.79656 4.84674 4.88736 4.94277 4.99663 5.01742 5.05020 5.19382 5.22693 5.26293 5.29948 5.82158 6.01244 6.06983 6.17362 6.45092 6.88216 7.05495 7.58717 8.02217 9.00493 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030581 B = 0.003367 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.374600 B = 8313.589127 C = 8883.586726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.034 4.034 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.310 1.310 6 H -0.265 1.265 7 C -0.247 4.247 8 H 0.055 0.945 9 N -0.624 5.624 10 C 0.127 3.873 11 C 0.052 3.948 12 N -0.524 5.524 13 C 0.072 3.928 14 H 0.052 0.948 15 C -0.115 4.115 16 C 0.103 3.897 17 N -0.614 5.614 18 C 0.546 3.454 19 O -0.596 6.596 20 C -0.194 4.194 21 C -0.155 4.155 22 C -0.138 4.138 23 C 0.116 3.884 24 C 0.055 3.945 25 C 0.145 3.855 26 H 0.262 0.738 27 H 0.034 0.966 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.024 0.976 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.080 0.920 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.053 0.947 42 H 0.022 0.978 43 H 0.111 0.889 44 H 0.038 0.962 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.239 -11.184 -9.054 29.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.229 4.229 3 Si 0.775 3.225 4 H -0.201 1.201 5 H -0.238 1.238 6 H -0.189 1.189 7 C -0.377 4.377 8 H 0.073 0.927 9 N -0.349 5.349 10 C 0.002 3.998 11 C -0.078 4.078 12 N -0.249 5.249 13 C -0.038 4.038 14 H 0.070 0.930 15 C -0.153 4.153 16 C -0.018 4.018 17 N -0.347 5.347 18 C 0.336 3.664 19 O -0.477 6.477 20 C -0.214 4.214 21 C -0.192 4.192 22 C -0.175 4.175 23 C -0.008 4.008 24 C -0.074 4.074 25 C 0.020 3.980 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.171 0.829 36 H 0.099 0.901 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.102 0.898 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.041 0.959 43 H 0.130 0.870 44 H 0.056 0.944 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 26.285 -10.310 -9.113 29.668 hybrid contribution -1.373 0.888 -0.399 1.683 sum 24.912 -9.421 -9.512 28.282 Atomic orbital electron populations 1.69950 1.07324 1.27218 1.55856 1.25911 0.95832 1.00883 1.00259 0.85940 0.78414 0.80327 0.77800 1.20124 1.23843 1.18919 1.18877 0.86157 0.93446 1.39218 0.92734 1.44562 1.07108 1.35536 1.47705 1.21406 0.95846 0.92155 0.90399 1.22429 0.93065 0.96238 0.96028 1.61928 1.22557 1.20044 1.20403 1.22738 0.94335 0.94361 0.92319 0.93017 1.22739 0.92771 1.01500 0.98254 1.22310 1.00205 0.87830 0.91501 1.48456 1.29709 1.29403 1.27132 1.20129 0.83646 0.84237 0.78340 1.90684 1.70832 1.30303 1.55873 1.22221 0.91171 1.00926 1.07098 1.23035 1.01455 1.03788 0.90927 1.23039 0.93043 1.02052 0.99370 1.22065 0.86678 0.95441 0.96602 1.22515 0.97470 0.92969 0.94442 1.21233 0.91450 0.90928 0.94367 0.92935 0.94859 0.93085 0.90035 0.95770 0.89065 0.87581 0.88906 0.88737 0.82876 0.90113 0.85152 0.84470 0.89845 0.91289 0.92834 0.95947 0.87048 0.94378 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.95 13.97 21.65 0.30 -60.65 16 2 C -0.03 -2.02 5.25 84.86 0.45 -1.58 16 3 Si 0.95 47.81 24.31 68.60 1.67 49.48 16 4 H -0.27 -13.18 6.50 99.48 0.65 -12.53 16 5 H -0.31 -15.83 7.11 99.48 0.71 -15.13 16 6 H -0.26 -12.95 6.77 99.48 0.67 -12.27 16 7 C -0.25 -14.16 10.07 84.03 0.85 -13.32 16 8 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 9 N -0.62 -29.63 2.79 -698.12 -1.95 -31.58 16 10 C 0.13 5.56 4.35 86.35 0.38 5.94 16 11 C 0.05 1.83 5.48 86.38 0.47 2.31 16 12 N -0.52 -15.18 4.53 -861.90 -3.90 -19.08 16 13 C 0.07 1.61 2.71 46.31 0.13 1.73 16 14 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 15 C -0.11 -1.60 5.33 31.78 0.17 -1.43 16 16 C 0.10 1.23 6.30 86.72 0.55 1.78 16 17 N -0.61 -12.88 3.33 -811.82 -2.70 -15.58 16 18 C 0.55 13.16 7.63 87.65 0.67 13.83 16 19 O -0.60 -20.28 16.51 -3.04 -0.05 -20.33 16 20 C -0.19 -2.78 5.54 -11.54 -0.06 -2.85 16 21 C -0.15 -2.11 10.04 30.60 0.31 -1.80 16 22 C -0.14 -1.56 10.23 30.59 0.31 -1.24 16 23 C 0.12 2.91 5.34 86.86 0.46 3.37 16 24 C 0.05 1.57 5.48 86.39 0.47 2.04 16 25 C 0.14 5.38 6.69 86.35 0.58 5.96 16 26 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 27 H 0.03 1.46 6.99 -2.39 -0.02 1.44 16 28 H 0.05 2.47 4.72 -2.39 -0.01 2.46 16 29 H 0.08 2.63 6.81 -2.38 -0.02 2.61 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.11 1.04 7.93 -2.39 -0.02 1.02 16 33 H 0.09 0.72 7.98 -2.39 -0.02 0.70 16 34 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.15 1.24 7.67 -2.39 -0.02 1.22 16 36 H 0.08 1.56 7.67 -2.39 -0.02 1.54 16 37 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 41 H 0.05 1.57 7.74 -2.39 -0.02 1.55 16 42 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.11 2.30 6.85 -2.39 -0.02 2.28 16 44 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 45 H 0.06 2.38 7.95 -2.39 -0.02 2.36 16 Total: -1.00 -76.28 346.35 -0.05 -76.32 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: 0.87 Total: 6.68 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 5.72 Total: 14.74 kcal Atomic # 7 Polarization: -118.64 SS G_CDS: -8.25 Total: -126.89 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.05 Total: -20.33 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 1.67 Total: 49.48 kcal Total: -76.28 -0.05 -76.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051968004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.214 kcal (2) G-P(sol) polarization free energy of solvation -76.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds