Wall clock time and date at job start Tue Mar 31 2020 07:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47103 * 299.99841 * 3 2 1 6 6 H 1.48496 * 109.47468 * 59.99936 * 3 2 1 7 7 C 1.38812 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00196 * 197.01291 * 7 2 1 9 9 N 1.36938 * 119.99913 * 17.00669 * 7 2 1 10 10 C 1.47079 * 120.88251 * 206.56958 * 9 7 2 11 11 C 1.53237 * 108.52585 * 231.20810 * 10 9 7 12 12 N 1.46894 * 109.34270 * 306.17325 * 11 10 9 13 13 C 1.46897 * 111.00233 * 187.24720 * 12 11 10 14 14 H 1.08994 * 110.92127 * 303.90344 * 13 12 11 15 15 C 1.55275 * 111.09520 * 67.81850 * 13 12 11 16 16 C 1.54328 * 103.00896 * 153.44643 * 15 13 12 17 17 N 1.47017 * 107.27049 * 337.88575 * 16 15 13 18 18 C 1.34779 * 125.65134 * 178.96278 * 17 16 15 19 19 O 1.21276 * 120.00248 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.99695 * 359.97231 * 18 17 16 21 21 C 1.53005 * 117.49383 * 248.74838 * 20 18 17 22 22 C 1.53002 * 117.49685 * 180.09014 * 20 18 17 23 23 C 1.47425 * 108.70389 * 358.93620 * 17 16 15 24 24 C 1.46902 * 111.26960 * 63.09868 * 12 11 10 25 25 C 1.47079 * 120.88011 * 26.60039 * 9 7 2 26 26 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.62422 * 111.50049 * 10 9 7 28 28 H 1.08999 * 109.62853 * 350.92605 * 10 9 7 29 29 H 1.09000 * 109.49531 * 186.21202 * 11 10 9 30 30 H 1.09007 * 109.51341 * 66.14554 * 11 10 9 31 31 H 1.09000 * 110.62688 * 35.09529 * 15 13 12 32 32 H 1.09006 * 110.91014 * 271.93202 * 15 13 12 33 33 H 1.08996 * 109.88468 * 218.46399 * 16 15 13 34 34 H 1.09007 * 109.87971 * 97.30203 * 16 15 13 35 35 H 1.08996 * 115.55266 * 34.41531 * 20 18 17 36 36 H 1.08997 * 117.50249 * 0.02562 * 21 20 18 37 37 H 1.09003 * 117.49206 * 145.02260 * 21 20 18 38 38 H 1.09001 * 117.49437 * 214.97375 * 22 20 18 39 39 H 1.08999 * 117.49834 * 0.02562 * 22 20 18 40 40 H 1.09001 * 110.36777 * 142.96808 * 23 17 16 41 41 H 1.09000 * 110.36959 * 265.18103 * 23 17 16 42 42 H 1.09007 * 109.48720 * 56.85734 * 24 12 11 43 43 H 1.08994 * 109.49488 * 176.93223 * 24 12 11 44 44 H 1.09001 * 109.62844 * 248.50186 * 25 9 7 45 45 H 1.08995 * 109.63220 * 9.07768 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2228 0.2731 9 7 1.3705 -2.3620 -0.3479 10 6 1.8311 -3.6611 0.1653 11 6 2.0032 -4.6189 -1.0184 12 7 0.7559 -4.6640 -1.7931 13 6 0.8202 -5.6978 -2.8347 14 1 1.6795 -5.5407 -3.4866 15 6 0.8492 -7.1192 -2.2104 16 6 0.2375 -7.9990 -3.3209 17 7 -0.5612 -7.1181 -4.1855 18 6 -1.2416 -7.5019 -5.2838 19 8 -1.8700 -6.6856 -5.9239 20 6 -1.2214 -8.9453 -5.7165 21 6 -0.4819 -9.2839 -7.0125 22 6 -2.0118 -9.3173 -6.9726 23 6 -0.4951 -5.7455 -3.6517 24 6 0.4410 -3.3515 -2.3729 25 6 0.2049 -2.3417 -1.2447 26 1 -0.4850 0.8400 0.0004 27 1 1.0920 -4.0640 0.8579 28 1 2.7856 -3.5353 0.6764 29 1 2.2374 -5.6168 -0.6478 30 1 2.8148 -4.2679 -1.6559 31 1 0.2373 -7.1552 -1.3090 32 1 1.8718 -7.4279 -1.9932 33 1 -0.4016 -8.7632 -2.8787 34 1 1.0318 -8.4679 -3.9020 35 1 -1.1844 -9.6774 -4.9099 36 1 -0.0097 -8.4629 -7.5518 37 1 0.0411 -10.2391 -7.0585 38 1 -2.4945 -10.2944 -6.9925 39 1 -2.5460 -8.5179 -7.4862 40 1 -0.4617 -5.0226 -4.4669 41 1 -1.3505 -5.5481 -3.0056 42 1 1.2743 -3.0176 -2.9913 43 1 -0.4577 -3.4302 -2.9846 44 1 -0.6905 -2.6177 -0.6877 45 1 0.0842 -1.3436 -1.6658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051968005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:18 Heat of formation + Delta-G solvation = 31.669362 kcal Electronic energy + Delta-G solvation = -24084.572293 eV Core-core repulsion = 20717.770892 eV Total energy + Delta-G solvation = -3366.801401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38197 -38.75190 -37.03008 -36.09432 -34.17163 -31.63490 -30.74806 -29.74430 -28.75124 -26.30025 -24.63206 -23.21243 -22.84269 -22.71872 -21.85017 -20.37666 -19.17722 -19.03577 -17.69365 -17.05504 -16.28060 -15.81987 -15.23022 -14.80727 -14.65800 -14.35108 -13.98939 -13.87185 -13.47287 -13.44402 -13.35292 -13.04245 -12.62972 -12.45194 -12.37399 -11.87561 -11.76321 -11.44679 -11.19722 -11.05227 -10.98000 -10.84566 -10.79905 -10.74022 -10.42830 -10.30197 -10.03932 -9.96050 -9.73766 -9.58698 -8.74983 -8.51222 -7.90922 -6.67290 -5.78124 -3.19392 2.34223 2.76043 3.37328 3.45217 3.47143 3.58393 4.15904 4.23616 4.48376 4.50267 4.58139 4.58810 4.62159 4.82308 4.96883 5.21692 5.27098 5.29082 5.39652 5.41401 5.43563 5.45829 5.62697 5.71710 5.80752 5.82563 5.84711 5.90022 5.93296 6.06222 6.13162 6.16742 6.27282 6.32312 6.51348 6.67714 6.90494 7.22562 7.38710 7.54953 7.62646 7.68875 7.81272 8.04865 8.43323 9.21100 9.84554 10.42710 11.30685 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.003112 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.961556 B = 8996.335916 C = 9504.934327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.520 5.520 13 C 0.069 3.931 14 H 0.050 0.950 15 C -0.123 4.123 16 C 0.104 3.896 17 N -0.614 5.614 18 C 0.556 3.444 19 O -0.541 6.541 20 C -0.190 4.190 21 C -0.153 4.153 22 C -0.148 4.148 23 C 0.115 3.885 24 C 0.032 3.968 25 C 0.179 3.821 26 H 0.253 0.747 27 H 0.026 0.974 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.026 0.974 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 -20.556 -9.253 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.246 5.246 13 C -0.041 4.041 14 H 0.068 0.932 15 C -0.161 4.161 16 C -0.019 4.019 17 N -0.348 5.348 18 C 0.345 3.655 19 O -0.419 6.419 20 C -0.211 4.211 21 C -0.190 4.190 22 C -0.186 4.186 23 C -0.008 4.008 24 C -0.097 4.097 25 C 0.053 3.947 26 H 0.064 0.936 27 H 0.044 0.956 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.088 -20.091 -9.315 22.145 hybrid contribution 1.129 1.012 -0.397 1.567 sum 1.041 -19.079 -9.711 21.434 Atomic orbital electron populations 1.70035 1.05197 1.25389 1.54069 1.25028 0.95314 0.98370 1.01051 0.86233 0.79288 0.84020 0.77289 1.20340 1.21583 1.21708 1.19223 0.92575 0.84789 1.41551 0.91620 1.44133 1.34166 1.01260 1.52349 1.20970 0.97784 0.86479 0.92520 1.22629 0.89356 0.99498 0.96909 1.62027 1.34505 1.05502 1.22538 1.22750 0.95816 0.92677 0.92810 0.93201 1.22713 1.01674 0.93651 0.98084 1.22059 0.94537 0.93527 0.91786 1.48348 1.49603 1.10416 1.26432 1.19300 0.78164 0.89103 0.78932 1.90709 1.42923 1.54134 1.54091 1.22161 1.10016 0.94917 0.93998 1.22945 0.95485 1.03396 0.97218 1.22975 0.94144 1.03382 0.98079 1.22262 0.98358 0.82775 0.97375 1.22971 0.98822 0.89103 0.98825 1.20861 0.88964 0.96571 0.88327 0.93645 0.95637 0.92602 0.91878 0.95396 0.89196 0.90201 0.91260 0.91403 0.85943 0.88274 0.87782 0.87890 0.87374 0.90584 0.90045 0.95567 0.91860 0.95495 0.89301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.30 11.15 55.49 0.62 -25.68 16 2 C 0.00 0.02 4.94 -17.43 -0.09 -0.06 16 3 Si 0.90 21.75 29.59 -169.99 -5.03 16.72 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.25 -6.92 9.63 -15.06 -0.15 -7.06 16 8 H 0.07 1.77 7.88 -52.48 -0.41 1.36 16 9 N -0.60 -14.99 3.04 -172.01 -0.52 -15.52 16 10 C 0.15 3.10 6.69 -3.60 -0.02 3.07 16 11 C 0.05 0.77 5.52 -3.70 -0.02 0.75 16 12 N -0.52 -8.82 4.53 -223.70 -1.01 -9.83 16 13 C 0.07 0.95 2.72 -65.50 -0.18 0.77 16 14 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 15 C -0.12 -1.27 5.63 -24.83 -0.14 -1.41 16 16 C 0.10 0.95 6.29 -3.06 -0.02 0.93 16 17 N -0.61 -7.65 3.33 -170.52 -0.57 -8.22 16 18 C 0.56 7.44 7.63 -10.98 -0.08 7.35 16 19 O -0.54 -9.38 16.51 5.56 0.09 -9.29 16 20 C -0.19 -1.75 5.53 -91.77 -0.51 -2.26 16 21 C -0.15 -1.17 10.24 -26.69 -0.27 -1.44 16 22 C -0.15 -1.23 10.05 -26.69 -0.27 -1.50 16 23 C 0.11 1.63 5.03 -2.53 -0.01 1.62 16 24 C 0.03 0.62 5.43 -3.70 -0.02 0.60 16 25 C 0.18 4.31 5.42 -3.60 -0.02 4.29 16 26 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.03 0.55 8.14 -51.92 -0.42 0.12 16 28 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 29 H 0.06 0.89 7.12 -51.93 -0.37 0.52 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.71 7.98 -51.93 -0.41 0.29 16 33 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.12 0.87 7.74 -51.93 -0.40 0.47 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.11 1.09 7.67 -51.93 -0.40 0.69 16 40 H 0.08 1.18 7.77 -51.93 -0.40 0.78 16 41 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 1.14 6.60 -51.93 -0.34 0.80 16 44 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.09 2.39 6.12 -51.93 -0.32 2.07 16 LS Contribution 352.94 15.07 5.32 5.32 Total: -1.00 -31.98 352.94 -10.58 -42.56 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.68 Total: -1.71 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.80 Total: 5.64 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -1.48 Total: -59.24 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.98 -10.58 -42.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051968005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.225 kcal (2) G-P(sol) polarization free energy of solvation -31.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds