Wall clock time and date at job start Tue Mar 31 2020 07:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86794 * 119.99973 * 2 1 4 4 H 1.48503 * 109.47204 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47103 * 299.99841 * 3 2 1 6 6 H 1.48496 * 109.47468 * 59.99936 * 3 2 1 7 7 C 1.38812 * 120.00055 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00196 * 197.01291 * 7 2 1 9 9 N 1.36938 * 119.99913 * 17.00669 * 7 2 1 10 10 C 1.47079 * 120.88251 * 206.56958 * 9 7 2 11 11 C 1.53237 * 108.52585 * 231.20810 * 10 9 7 12 12 N 1.46894 * 109.34270 * 306.17325 * 11 10 9 13 13 C 1.46897 * 111.00233 * 187.24720 * 12 11 10 14 14 H 1.08994 * 110.92127 * 303.90344 * 13 12 11 15 15 C 1.55275 * 111.09520 * 67.81850 * 13 12 11 16 16 C 1.54328 * 103.00896 * 153.44643 * 15 13 12 17 17 N 1.47017 * 107.27049 * 337.88575 * 16 15 13 18 18 C 1.34779 * 125.65134 * 178.96278 * 17 16 15 19 19 O 1.21276 * 120.00248 * 179.97438 * 18 17 16 20 20 C 1.50701 * 119.99695 * 359.97231 * 18 17 16 21 21 C 1.53005 * 117.49383 * 248.74838 * 20 18 17 22 22 C 1.53002 * 117.49685 * 180.09014 * 20 18 17 23 23 C 1.47425 * 108.70389 * 358.93620 * 17 16 15 24 24 C 1.46902 * 111.26960 * 63.09868 * 12 11 10 25 25 C 1.47079 * 120.88011 * 26.60039 * 9 7 2 26 26 H 0.97000 * 120.00028 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.62422 * 111.50049 * 10 9 7 28 28 H 1.08999 * 109.62853 * 350.92605 * 10 9 7 29 29 H 1.09000 * 109.49531 * 186.21202 * 11 10 9 30 30 H 1.09007 * 109.51341 * 66.14554 * 11 10 9 31 31 H 1.09000 * 110.62688 * 35.09529 * 15 13 12 32 32 H 1.09006 * 110.91014 * 271.93202 * 15 13 12 33 33 H 1.08996 * 109.88468 * 218.46399 * 16 15 13 34 34 H 1.09007 * 109.87971 * 97.30203 * 16 15 13 35 35 H 1.08996 * 115.55266 * 34.41531 * 20 18 17 36 36 H 1.08997 * 117.50249 * 0.02562 * 21 20 18 37 37 H 1.09003 * 117.49206 * 145.02260 * 21 20 18 38 38 H 1.09001 * 117.49437 * 214.97375 * 22 20 18 39 39 H 1.08999 * 117.49834 * 0.02562 * 22 20 18 40 40 H 1.09001 * 110.36777 * 142.96808 * 23 17 16 41 41 H 1.09000 * 110.36959 * 265.18103 * 23 17 16 42 42 H 1.09007 * 109.48720 * 56.85734 * 24 12 11 43 43 H 1.08994 * 109.49488 * 176.93223 * 24 12 11 44 44 H 1.09001 * 109.62844 * 248.50186 * 25 9 7 45 45 H 1.08995 * 109.63220 * 9.07768 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0548 -1.2228 0.2731 9 7 1.3705 -2.3620 -0.3479 10 6 1.8311 -3.6611 0.1653 11 6 2.0032 -4.6189 -1.0184 12 7 0.7559 -4.6640 -1.7931 13 6 0.8202 -5.6978 -2.8347 14 1 1.6795 -5.5407 -3.4866 15 6 0.8492 -7.1192 -2.2104 16 6 0.2375 -7.9990 -3.3209 17 7 -0.5612 -7.1181 -4.1855 18 6 -1.2416 -7.5019 -5.2838 19 8 -1.8700 -6.6856 -5.9239 20 6 -1.2214 -8.9453 -5.7165 21 6 -0.4819 -9.2839 -7.0125 22 6 -2.0118 -9.3173 -6.9726 23 6 -0.4951 -5.7455 -3.6517 24 6 0.4410 -3.3515 -2.3729 25 6 0.2049 -2.3417 -1.2447 26 1 -0.4850 0.8400 0.0004 27 1 1.0920 -4.0640 0.8579 28 1 2.7856 -3.5353 0.6764 29 1 2.2374 -5.6168 -0.6478 30 1 2.8148 -4.2679 -1.6559 31 1 0.2373 -7.1552 -1.3090 32 1 1.8718 -7.4279 -1.9932 33 1 -0.4016 -8.7632 -2.8787 34 1 1.0318 -8.4679 -3.9020 35 1 -1.1844 -9.6774 -4.9099 36 1 -0.0097 -8.4629 -7.5518 37 1 0.0411 -10.2391 -7.0585 38 1 -2.4945 -10.2944 -6.9925 39 1 -2.5460 -8.5179 -7.4862 40 1 -0.4617 -5.0226 -4.4669 41 1 -1.3505 -5.5481 -3.0056 42 1 1.2743 -3.0176 -2.9913 43 1 -0.4577 -3.4302 -2.9846 44 1 -0.6905 -2.6177 -0.6877 45 1 0.0842 -1.3436 -1.6658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051968005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:17 Heat of formation + Delta-G solvation = 10.419547 kcal Electronic energy + Delta-G solvation = -24085.493755 eV Core-core repulsion = 20717.770892 eV Total energy + Delta-G solvation = -3367.722863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.38532 -40.00975 -38.31565 -36.95898 -35.83617 -33.38419 -32.09832 -31.31606 -29.91449 -27.95548 -25.82686 -24.53653 -24.49345 -23.33626 -22.98074 -21.59568 -20.82602 -19.95534 -18.85662 -18.53841 -17.58911 -16.84088 -16.77008 -16.15170 -15.80968 -15.59923 -15.41039 -15.32389 -15.09580 -14.82171 -14.57080 -14.28269 -13.98675 -13.61619 -13.35342 -13.19250 -13.11789 -12.73086 -12.57353 -12.52779 -12.42893 -12.21696 -12.03368 -11.90187 -11.78318 -11.54190 -11.47675 -11.44479 -11.35477 -10.98372 -10.60910 -9.74151 -9.34195 -8.70084 -7.88978 -5.33518 1.40208 1.44546 1.46398 1.56874 1.81500 2.49451 2.90711 2.93442 3.26735 3.29703 3.65540 3.69062 3.70672 3.84326 3.97706 4.04743 4.16622 4.21634 4.31554 4.33633 4.37849 4.51868 4.57901 4.63410 4.68161 4.73651 4.78021 4.84329 4.86720 4.89249 4.97663 5.02539 5.09188 5.15885 5.21681 5.23027 5.29046 5.36809 5.60394 5.65372 6.10289 6.22770 6.35962 6.46178 7.05691 7.11647 7.82919 8.36767 9.18058 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032896 B = 0.003112 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.961556 B = 8996.335916 C = 9504.934327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.054 4.054 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.261 4.261 8 H 0.070 0.930 9 N -0.615 5.615 10 C 0.143 3.857 11 C 0.058 3.942 12 N -0.526 5.526 13 C 0.072 3.928 14 H 0.052 0.948 15 C -0.114 4.114 16 C 0.104 3.896 17 N -0.614 5.614 18 C 0.545 3.455 19 O -0.596 6.596 20 C -0.193 4.193 21 C -0.138 4.138 22 C -0.154 4.154 23 C 0.116 3.884 24 C 0.050 3.950 25 C 0.188 3.812 26 H 0.249 0.751 27 H 0.019 0.981 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.023 0.977 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.154 0.846 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.071 0.929 44 H -0.002 1.002 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 -24.010 -9.379 25.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.189 1.189 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.391 4.391 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.018 3.982 11 C -0.071 4.071 12 N -0.251 5.251 13 C -0.037 4.037 14 H 0.070 0.930 15 C -0.152 4.152 16 C -0.018 4.018 17 N -0.347 5.347 18 C 0.336 3.664 19 O -0.477 6.477 20 C -0.214 4.214 21 C -0.175 4.175 22 C -0.191 4.191 23 C -0.008 4.008 24 C -0.079 4.079 25 C 0.062 3.938 26 H 0.059 0.941 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.124 0.876 30 H 0.041 0.959 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.172 0.828 36 H 0.101 0.899 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.082 0.918 42 H 0.036 0.964 43 H 0.089 0.911 44 H 0.017 0.983 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.918 -23.605 -9.419 25.487 hybrid contribution 0.494 2.052 -0.335 2.137 sum 2.413 -21.553 -9.754 23.780 Atomic orbital electron populations 1.70197 1.06709 1.25752 1.55630 1.25815 0.96075 1.01587 1.01461 0.85197 0.78649 0.79822 0.76723 1.18928 1.21901 1.21838 1.19576 0.92937 0.85952 1.40649 0.91229 1.44421 1.34123 1.02414 1.52974 1.21165 0.97621 0.85286 0.94155 1.22487 0.88916 1.00493 0.95198 1.61947 1.34838 1.04604 1.23736 1.22754 0.95187 0.93580 0.92179 0.92979 1.22733 1.03457 0.90883 0.98081 1.22321 0.95245 0.93061 0.91175 1.48470 1.49607 1.10017 1.26595 1.20173 0.77173 0.90633 0.78443 1.90681 1.45241 1.56007 1.55811 1.22224 1.11427 0.92356 0.95396 1.23057 0.94988 1.04263 0.95199 1.23052 0.94895 1.03819 0.97359 1.22054 0.98271 0.83987 0.96453 1.22575 0.98946 0.89721 0.96706 1.20560 0.87998 0.96101 0.89135 0.94144 0.96330 0.91846 0.87648 0.95865 0.89562 0.87457 0.88737 0.88721 0.82808 0.89914 0.84377 0.85038 0.90136 0.92975 0.91771 0.96386 0.91107 0.98349 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.75 11.15 21.65 0.24 -56.51 16 2 C -0.05 -3.09 4.94 84.86 0.42 -2.67 16 3 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 7 C -0.26 -14.55 9.63 84.03 0.81 -13.74 16 8 H 0.07 3.75 7.88 -2.91 -0.02 3.72 16 9 N -0.62 -31.57 3.04 -698.13 -2.12 -33.69 16 10 C 0.14 5.84 6.69 86.35 0.58 6.42 16 11 C 0.06 1.84 5.52 86.38 0.48 2.32 16 12 N -0.53 -17.30 4.53 -861.66 -3.90 -21.21 16 13 C 0.07 1.83 2.72 46.35 0.13 1.96 16 14 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 15 C -0.11 -1.88 5.63 31.83 0.18 -1.71 16 16 C 0.10 1.45 6.29 86.73 0.55 1.99 16 17 N -0.61 -14.30 3.33 -811.78 -2.70 -17.00 16 18 C 0.54 14.16 7.63 87.66 0.67 14.83 16 19 O -0.60 -21.47 16.51 -3.02 -0.05 -21.52 16 20 C -0.19 -3.03 5.53 -11.54 -0.06 -3.10 16 21 C -0.14 -1.69 10.24 30.62 0.31 -1.38 16 22 C -0.15 -2.26 10.05 30.62 0.31 -1.95 16 23 C 0.12 3.29 5.03 86.86 0.44 3.73 16 24 C 0.05 1.99 5.43 86.38 0.47 2.46 16 25 C 0.19 9.50 5.42 86.35 0.47 9.97 16 26 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 27 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.06 2.45 7.95 -2.39 -0.02 2.43 16 29 H 0.11 2.51 7.12 -2.39 -0.02 2.49 16 30 H 0.02 0.77 8.14 -2.38 -0.02 0.76 16 31 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 1.27 7.98 -2.38 -0.02 1.25 16 33 H 0.09 0.93 8.06 -2.39 -0.02 0.91 16 34 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.15 1.44 7.74 -2.39 -0.02 1.42 16 36 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.14 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.65 7.67 -2.39 -0.02 1.63 16 40 H 0.05 1.70 7.77 -2.39 -0.02 1.68 16 41 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 42 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.07 2.68 6.60 -2.39 -0.02 2.67 16 44 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 45 H 0.05 3.07 6.12 -2.39 -0.01 3.06 16 Total: -1.00 -74.28 352.94 0.18 -74.10 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.95 Total: 9.09 kcal Atomic # 6 Polarization: 13.40 SS G_CDS: 5.73 Total: 19.13 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -8.48 Total: -128.41 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -74.28 0.18 -74.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051968005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.515 kcal (2) G-P(sol) polarization free energy of solvation -74.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds