Wall clock time and date at job start Tue Mar 31 2020 07:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99999 * 2 1 4 4 H 1.48504 * 109.46839 * 240.00090 * 3 2 1 5 5 H 1.48496 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47000 * 120.00052 * 3 2 1 7 7 C 1.38813 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00031 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99766 * 359.97438 * 7 2 1 10 10 C 1.47146 * 125.58497 * 0.02596 * 9 7 2 11 11 C 1.54621 * 107.38073 * 179.04149 * 10 9 7 12 12 C 1.53517 * 102.70297 * 339.38738 * 11 10 9 13 13 C 1.51785 * 116.99886 * 164.16274 * 12 11 10 14 14 N 1.47396 * 87.51442 * 92.92746 * 13 12 11 15 15 C 1.34780 * 135.85209 * 205.66129 * 14 13 12 16 16 O 1.21285 * 119.99876 * 359.97438 * 15 14 13 17 17 C 1.50698 * 120.00283 * 180.02562 * 15 14 13 18 18 N 1.46905 * 109.47165 * 180.02562 * 17 15 14 19 19 C 1.48560 * 110.99577 * 169.99909 * 18 17 15 20 20 C 1.54378 * 104.69549 * 200.89794 * 19 18 17 21 21 C 1.54571 * 104.91190 * 23.88545 * 20 19 18 22 22 C 1.48555 * 110.99889 * 54.58389 * 18 17 15 23 23 C 1.47386 * 88.29470 * 25.91726 * 14 13 12 24 24 C 1.47760 * 125.57721 * 179.97438 * 9 7 2 25 25 H 0.96999 * 120.00178 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.86207 * 59.58802 * 10 9 7 27 27 H 1.09006 * 109.86210 * 298.49588 * 10 9 7 28 28 H 1.09002 * 110.76987 * 221.08067 * 11 10 9 29 29 H 1.09007 * 110.76789 * 97.68944 * 11 10 9 30 30 H 1.09000 * 113.54509 * 338.26991 * 13 12 11 31 31 H 1.09001 * 113.60586 * 207.59338 * 13 12 11 32 32 H 1.09000 * 109.46851 * 60.00107 * 17 15 14 33 33 H 1.08997 * 109.46905 * 300.00243 * 17 15 14 34 34 H 1.09002 * 110.41441 * 319.73871 * 19 18 17 35 35 H 1.09002 * 110.41248 * 82.06172 * 19 18 17 36 36 H 1.09006 * 110.32557 * 142.80924 * 20 19 18 37 37 H 1.08996 * 110.32821 * 265.02105 * 20 19 18 38 38 H 1.08995 * 110.29758 * 241.08109 * 21 20 19 39 39 H 1.09004 * 110.32005 * 118.89089 * 21 20 19 40 40 H 1.09005 * 110.41154 * 277.81401 * 22 18 17 41 41 H 1.08998 * 110.41848 * 40.13562 * 22 18 17 42 42 H 1.09005 * 113.54229 * 88.74282 * 23 14 13 43 43 H 1.09000 * 113.54341 * 219.41959 * 23 14 13 44 44 H 1.08999 * 110.40775 * 83.55142 * 24 9 7 45 45 H 1.08995 * 110.40449 * 321.12675 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1389 -2.5312 0.0017 11 6 -0.4551 -4.0446 -0.0216 12 6 0.8471 -4.6532 -0.5606 13 6 1.0379 -6.1475 -0.3749 14 7 0.4461 -6.3245 -1.7132 15 6 -0.2203 -7.3052 -2.3540 16 8 -0.4491 -8.3531 -1.7877 17 6 -0.6799 -7.1004 -3.7744 18 7 -1.3766 -8.3061 -4.2424 19 6 -2.0506 -8.0603 -5.5433 20 6 -3.1341 -9.1561 -5.6361 21 6 -3.4189 -9.5591 -4.1713 22 6 -2.4831 -8.6728 -3.3215 23 6 0.9057 -4.9647 -2.0479 24 6 1.9364 -3.7334 0.0017 25 1 -0.4850 0.8400 -0.0004 26 1 -0.5580 -2.0515 -0.8828 27 1 -0.5551 -2.0796 0.9023 28 1 -1.2872 -4.2553 -0.6934 29 1 -0.6660 -4.4109 0.9832 30 1 0.4320 -6.5673 0.4281 31 1 2.0834 -6.4503 -0.3177 32 1 0.1834 -6.9088 -4.4116 33 1 -1.3592 -6.2490 -3.8172 34 1 -2.5084 -7.0712 -5.5533 35 1 -1.3400 -8.1578 -6.3640 36 1 -4.0353 -8.7589 -6.1033 37 1 -2.7604 -10.0114 -6.1990 38 1 -3.1859 -10.6126 -4.0168 39 1 -4.4606 -9.3600 -3.9196 40 1 -2.0986 -9.2336 -2.4695 41 1 -3.0073 -7.7794 -2.9822 42 1 1.9146 -4.9351 -2.4596 43 1 0.1894 -4.3969 -2.6418 44 1 2.1988 -4.0316 1.0168 45 1 2.8172 -3.7509 -0.6401 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073429892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:23 Heat of formation + Delta-G solvation = 46.653744 kcal Electronic energy + Delta-G solvation = -24051.661607 eV Core-core repulsion = 20685.509978 eV Total energy + Delta-G solvation = -3366.151630 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.73142 -39.33569 -37.63855 -35.66575 -32.57367 -32.15967 -29.74409 -28.93936 -28.85706 -26.87733 -25.98633 -25.13629 -23.56037 -21.39845 -21.01693 -20.33608 -19.26452 -18.32403 -16.94286 -16.65605 -16.47486 -15.94245 -15.61968 -15.32942 -14.75448 -14.39955 -14.35507 -13.91349 -13.71807 -13.23435 -12.81055 -12.49872 -12.46674 -12.36078 -12.21964 -11.96695 -11.85593 -11.72482 -11.40392 -11.19188 -11.02437 -10.94029 -10.71386 -10.66564 -10.44283 -10.18134 -10.15405 -9.87897 -9.69375 -9.47383 -8.68566 -8.63469 -8.49296 -6.88060 -5.75072 -3.08889 2.67496 2.82733 3.37944 3.42587 3.43659 3.87328 4.33635 4.45244 4.48230 4.61356 4.73246 4.79800 4.92714 5.11861 5.14429 5.20448 5.26210 5.36577 5.45237 5.49456 5.53374 5.60449 5.63111 5.66159 5.66684 5.76055 5.79691 5.84700 5.87753 5.97073 6.14243 6.16294 6.19523 6.42270 6.47329 6.62601 6.67349 6.68365 6.74459 7.51140 7.56825 7.77835 7.84761 8.20736 8.25630 9.17597 9.77683 10.43178 11.36432 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.028386 B = 0.003125 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.148433 B = 8958.471741 C = 9352.947972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.605 5.605 10 C 0.180 3.820 11 C -0.116 4.116 12 C -0.106 4.106 13 C 0.121 3.879 14 N -0.644 5.644 15 C 0.541 3.459 16 O -0.535 6.535 17 C 0.031 3.969 18 N -0.496 5.496 19 C 0.029 3.971 20 C -0.123 4.123 21 C -0.126 4.126 22 C 0.028 3.972 23 C 0.119 3.881 24 C 0.153 3.847 25 H 0.253 0.747 26 H 0.046 0.954 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.027 0.973 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.903 -14.771 -8.798 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.155 4.155 12 C -0.107 4.107 13 C -0.002 4.002 14 N -0.380 5.380 15 C 0.331 3.669 16 O -0.412 6.412 17 C -0.100 4.100 18 N -0.220 5.220 19 C -0.099 4.099 20 C -0.161 4.161 21 C -0.164 4.164 22 C -0.099 4.099 23 C -0.003 4.003 24 C 0.027 3.973 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.063 0.937 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.127 0.873 41 H 0.055 0.945 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.044 0.956 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.802 -15.677 -8.652 18.305 hybrid contribution -0.062 1.742 -0.023 1.743 sum -3.864 -13.935 -8.675 16.863 Atomic orbital electron populations 1.69947 1.04885 1.25178 1.56964 1.24798 0.95710 0.97671 1.02206 0.86201 0.78449 0.83198 0.77907 1.21174 1.21640 1.21166 1.19001 0.90414 0.82329 1.43975 0.90430 1.44536 1.01571 0.99686 1.87342 1.21219 0.84288 0.87807 1.01173 1.22458 0.94148 0.99227 0.99624 1.22186 0.99946 0.93479 0.95112 1.22753 0.98352 0.94167 0.84911 1.49851 1.54962 1.16271 1.16940 1.19935 0.77849 0.81826 0.87303 1.90630 1.56918 1.25617 1.68073 1.22120 1.00759 0.93186 0.93938 1.65319 1.24218 1.29825 1.02661 1.23193 0.96134 0.97762 0.92787 1.22330 0.97986 0.98599 0.97220 1.22386 0.99021 1.00528 0.94501 1.23366 0.90554 0.98833 0.97171 1.22900 1.00006 0.79817 0.97597 1.21141 0.93212 0.85699 0.97290 0.93696 0.93550 0.93813 0.92258 0.91808 0.90534 0.89804 0.87780 0.91694 0.93698 0.89993 0.91366 0.91023 0.91042 0.91534 0.87322 0.94479 0.89437 0.90239 0.95554 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.29 10.30 55.49 0.57 -25.72 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 3 Si 0.91 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.23 -6.10 10.28 -15.06 -0.15 -6.26 16 8 H 0.08 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.60 -14.53 3.41 -170.54 -0.58 -15.11 16 10 C 0.18 4.14 5.39 -2.84 -0.02 4.12 16 11 C -0.12 -2.06 6.40 -25.61 -0.16 -2.22 16 12 C -0.11 -1.67 1.06 -155.22 -0.16 -1.84 16 13 C 0.12 1.70 8.02 -7.47 -0.06 1.64 16 14 N -0.64 -9.25 3.70 -185.72 -0.69 -9.94 16 15 C 0.54 8.14 7.79 -10.98 -0.09 8.06 16 16 O -0.54 -9.59 14.44 5.55 0.08 -9.51 16 17 C 0.03 0.38 5.37 -4.97 -0.03 0.35 16 18 N -0.50 -6.12 5.34 -231.41 -1.23 -7.35 16 19 C 0.03 0.28 6.48 -2.18 -0.01 0.26 16 20 C -0.12 -1.04 7.02 -25.18 -0.18 -1.22 16 21 C -0.13 -1.21 7.01 -25.18 -0.18 -1.39 16 22 C 0.03 0.35 5.31 -2.19 -0.01 0.34 16 23 C 0.12 1.67 7.78 -7.33 -0.06 1.61 16 24 C 0.15 2.87 6.70 -3.22 -0.02 2.85 16 25 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 26 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 27 H 0.04 1.13 7.49 -51.93 -0.39 0.74 16 28 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 1.09 8.13 -51.93 -0.42 0.67 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 34 H 0.04 0.41 7.82 -51.93 -0.41 0.00 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.11 1.61 6.05 -51.93 -0.31 1.29 16 41 H 0.04 0.47 7.99 -51.93 -0.42 0.05 16 42 H 0.09 1.11 8.06 -51.93 -0.42 0.69 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.04 0.76 8.00 -51.93 -0.42 0.35 16 LS Contribution 352.62 15.07 5.31 5.31 Total: -1.00 -30.87 352.62 -10.55 -41.42 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.77 Total: -1.57 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -1.22 Total: 6.01 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -1.93 Total: -58.12 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.08 Total: -9.51 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.87 -10.55 -41.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073429892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.073 kcal (2) G-P(sol) polarization free energy of solvation -30.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds