Wall clock time and date at job start Tue Mar 31 2020 07:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47205 * 269.99659 * 3 2 1 5 5 H 1.48497 * 109.47466 * 29.99675 * 3 2 1 6 6 H 1.48498 * 109.47333 * 150.00093 * 3 2 1 7 7 C 1.38815 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00293 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99377 * 0.02562 * 7 2 1 10 10 C 1.50235 * 130.83958 * 359.97438 * 9 7 2 11 11 H 1.08998 * 116.46246 * 0.02562 * 10 9 7 12 12 C 1.55845 * 101.05038 * 233.96847 * 10 9 7 13 13 C 1.54857 * 103.44686 * 327.06615 * 12 10 9 14 14 C 1.50240 * 130.83272 * 180.02562 * 9 7 2 15 15 H 1.08995 * 115.86154 * 0.34729 * 14 9 7 16 16 C 1.55848 * 101.74715 * 234.15310 * 14 9 7 17 17 H 1.09005 * 110.62507 * 208.33950 * 16 14 9 18 18 N 1.46495 * 110.62853 * 85.32211 * 16 14 9 19 19 C 1.34776 * 120.00504 * 154.99687 * 18 16 14 20 20 O 1.21280 * 119.99881 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00457 * 179.97438 * 19 18 16 22 22 N 1.46900 * 109.47256 * 179.97438 * 21 19 18 23 23 C 1.48531 * 110.99611 * 52.60543 * 22 21 19 24 24 C 1.54939 * 103.22297 * 159.72048 * 23 22 21 25 25 C 1.54601 * 102.92257 * 322.58408 * 24 23 22 26 26 C 1.47902 * 110.99795 * 170.00061 * 22 21 19 27 27 C 1.54849 * 103.44934 * 326.83017 * 16 14 9 28 28 H 0.97005 * 120.00189 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.62893 * 208.57539 * 12 10 9 30 30 H 1.09004 * 110.62404 * 85.55379 * 12 10 9 31 31 H 1.09004 * 110.62191 * 118.48708 * 13 12 10 32 32 H 1.08997 * 110.62718 * 241.34508 * 13 12 10 33 33 H 0.97009 * 119.99906 * 334.99842 * 18 16 14 34 34 H 1.08990 * 109.47208 * 300.00393 * 21 19 18 35 35 H 1.09007 * 109.46785 * 60.00287 * 21 19 18 36 36 H 1.08995 * 110.66997 * 278.15088 * 23 22 21 37 37 H 1.08995 * 110.66793 * 41.28684 * 23 22 21 38 38 H 1.09000 * 110.72346 * 204.23051 * 24 23 22 39 39 H 1.09000 * 110.88003 * 81.01466 * 24 23 22 40 40 H 1.09002 * 110.30596 * 263.04480 * 25 24 23 41 41 H 1.09000 * 110.39138 * 140.91739 * 25 24 23 42 42 H 1.08996 * 109.91935 * 333.51096 * 26 22 21 43 43 H 1.08998 * 109.91750 * 94.60927 * 26 22 21 44 44 H 1.08995 * 110.62609 * 118.48942 * 27 16 14 45 45 H 1.09007 * 110.62565 * 241.35478 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1500 -2.6705 0.0005 11 1 -0.8105 -1.8035 0.0001 12 6 -0.2743 -3.6104 1.2375 13 6 1.0668 -4.3846 1.2376 14 6 1.8187 -3.8072 0.0016 15 1 2.9012 -3.9343 0.0084 16 6 1.0798 -4.4008 -1.2356 17 1 0.9163 -5.4710 -1.1082 18 7 1.8335 -4.1351 -2.4634 19 6 1.6836 -4.9403 -3.5337 20 8 0.9252 -5.8852 -3.4803 21 6 2.4585 -4.6666 -4.7970 22 7 2.1217 -5.6787 -5.8070 23 6 0.6514 -5.7751 -5.9942 24 6 0.5143 -6.4421 -7.3860 25 6 1.6720 -5.8064 -8.1896 26 6 2.6734 -5.3119 -7.1294 27 6 -0.2692 -3.6406 -1.2483 28 1 -0.4851 0.8401 -0.0004 29 1 -1.1132 -4.2956 1.1164 30 1 -0.3816 -3.0282 2.1528 31 1 1.6245 -4.1864 2.1529 32 1 0.8928 -5.4541 1.1194 33 1 2.4404 -3.3796 -2.5060 34 1 2.2010 -3.6769 -5.1739 35 1 3.5267 -4.7078 -4.5840 36 1 0.2055 -6.4017 -5.2219 37 1 0.1981 -4.7839 -5.9963 38 1 -0.4476 -6.1987 -7.8373 39 1 0.6425 -7.5221 -7.3136 40 1 1.3053 -4.9690 -8.7832 41 1 2.1401 -6.5502 -8.8343 42 1 2.7834 -4.2297 -7.1986 43 1 3.6405 -5.7933 -7.2747 44 1 -0.3774 -3.0659 -2.1681 45 1 -1.1019 -4.3341 -1.1299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098401878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:31 Heat of formation + Delta-G solvation = 18.611676 kcal Electronic energy + Delta-G solvation = -24568.366685 eV Core-core repulsion = 21200.999060 eV Total energy + Delta-G solvation = -3367.367625 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.00151 -38.95425 -37.64632 -33.76029 -32.59481 -32.25415 -29.13718 -28.88067 -28.83040 -28.02269 -26.03753 -24.21677 -21.79483 -21.02545 -20.82684 -19.86657 -19.70762 -18.65339 -17.01488 -16.82839 -16.21820 -15.77475 -15.29285 -15.00703 -14.79083 -14.10942 -13.94990 -13.73672 -13.45640 -13.03275 -12.79751 -12.39778 -12.19566 -12.03757 -11.87034 -11.57845 -11.40226 -11.23294 -11.13041 -10.95999 -10.94685 -10.90007 -10.66523 -10.50740 -10.34438 -10.12854 -9.92652 -9.54619 -9.23145 -9.09352 -8.96738 -8.48974 -8.35812 -6.97922 -5.78354 -3.17288 2.99331 3.32999 3.38586 3.40668 3.44853 4.11013 4.37521 4.60847 4.68326 4.86773 5.09817 5.13139 5.25699 5.28647 5.33720 5.39022 5.48159 5.62411 5.64182 5.70048 5.70472 5.78329 5.86850 5.94661 6.03853 6.10716 6.11222 6.14522 6.23871 6.32544 6.40234 6.48349 6.61428 6.74898 6.81374 6.85839 6.90412 6.95657 7.13037 7.30253 7.44483 7.76641 8.02791 8.12558 8.67020 9.03877 9.66822 10.48512 11.30896 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.004212 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.763535 B = 6645.292124 C = 7565.207287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.009 4.009 3 Si 0.915 3.085 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.215 4.215 8 H 0.078 0.922 9 N -0.590 5.590 10 C 0.158 3.842 11 H 0.152 0.848 12 C -0.140 4.140 13 C -0.128 4.128 14 C 0.126 3.874 15 H 0.086 0.914 16 C 0.130 3.870 17 H 0.080 0.920 18 N -0.706 5.706 19 C 0.510 3.490 20 O -0.539 6.539 21 C 0.025 3.975 22 N -0.501 5.501 23 C 0.032 3.968 24 C -0.126 4.126 25 C -0.131 4.131 26 C 0.033 3.967 27 C -0.146 4.146 28 H 0.254 0.746 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.402 0.598 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.037 0.963 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.983 -9.310 -10.221 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.343 4.343 8 H 0.096 0.904 9 N -0.310 5.310 10 C 0.051 3.949 11 H 0.169 0.831 12 C -0.179 4.179 13 C -0.168 4.168 14 C 0.018 3.982 15 H 0.104 0.896 16 C 0.023 3.977 17 H 0.098 0.902 18 N -0.356 5.356 19 C 0.295 3.705 20 O -0.417 6.417 21 C -0.106 4.106 22 N -0.225 5.225 23 C -0.096 4.096 24 C -0.164 4.164 25 C -0.169 4.169 26 C -0.095 4.095 27 C -0.187 4.187 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.236 0.764 34 H 0.081 0.919 35 H 0.120 0.880 36 H 0.132 0.868 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.702 -10.111 -9.963 14.450 hybrid contribution 0.543 2.107 -0.292 2.195 sum 3.245 -8.005 -10.256 13.409 Atomic orbital electron populations 1.69486 1.05020 1.25022 1.57152 1.24704 0.95586 0.97490 1.02755 0.86071 0.78529 0.83363 0.77489 1.21741 1.21679 1.20773 1.19004 0.90206 0.81884 1.43237 0.90387 1.46490 1.01702 0.98624 1.84217 1.24218 0.87278 0.94764 0.88628 0.83108 1.23072 0.95283 0.98315 1.01228 1.22870 0.97721 0.97657 0.98567 1.23125 0.96052 0.86777 0.92290 0.89572 1.22577 0.92687 0.98590 0.83803 0.90169 1.45998 1.45730 1.30668 1.13212 1.20333 0.82624 0.82667 0.84838 1.90587 1.38372 1.29957 1.82799 1.22240 1.01392 0.94863 0.92132 1.64680 1.10667 1.42494 1.04706 1.23522 0.88087 1.00172 0.97773 1.22528 0.97805 1.00753 0.95329 1.22388 0.96454 1.00468 0.97590 1.22933 0.98992 0.98847 0.88743 1.23922 0.94919 0.98349 1.01507 0.93535 0.93304 0.92658 0.92498 0.92974 0.76356 0.91899 0.88004 0.86840 0.94473 0.91327 0.90836 0.91687 0.91148 0.93794 0.90326 0.92503 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.46 10.48 55.49 0.58 -24.88 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.22 -5.54 10.59 -15.06 -0.16 -5.70 16 8 H 0.08 1.93 7.83 -52.49 -0.41 1.52 16 9 N -0.59 -13.78 3.00 -144.19 -0.43 -14.21 16 10 C 0.16 3.56 4.81 -61.23 -0.29 3.27 16 11 H 0.15 3.91 5.57 -51.93 -0.29 3.62 16 12 C -0.14 -2.75 6.43 -24.23 -0.16 -2.90 16 13 C -0.13 -2.32 6.43 -24.27 -0.16 -2.48 16 14 C 0.13 2.43 5.01 -62.84 -0.31 2.12 16 15 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 16 C 0.13 2.40 2.81 -65.44 -0.18 2.22 16 17 H 0.08 1.51 7.22 -51.93 -0.37 1.13 16 18 N -0.71 -11.94 5.07 -51.40 -0.26 -12.20 16 19 C 0.51 8.43 7.54 -10.99 -0.08 8.34 16 20 O -0.54 -10.38 13.17 5.56 0.07 -10.30 16 21 C 0.03 0.33 5.52 -4.98 -0.03 0.31 16 22 N -0.50 -6.71 5.26 -231.90 -1.22 -7.93 16 23 C 0.03 0.43 5.30 -1.90 -0.01 0.42 16 24 C -0.13 -1.35 7.06 -24.87 -0.18 -1.52 16 25 C -0.13 -1.23 6.93 -25.37 -0.18 -1.40 16 26 C 0.03 0.35 6.69 -2.76 -0.02 0.33 16 27 C -0.15 -2.96 6.33 -22.67 -0.14 -3.11 16 28 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 29 H 0.05 0.86 7.84 -51.93 -0.41 0.45 16 30 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.84 7.80 -51.93 -0.41 0.43 16 33 H 0.40 6.56 8.66 -40.82 -0.35 6.21 16 34 H 0.06 0.79 7.81 -51.93 -0.41 0.38 16 35 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.11 1.84 5.97 -51.93 -0.31 1.53 16 37 H 0.04 0.53 8.02 -51.93 -0.42 0.11 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.04 0.44 7.57 -51.93 -0.39 0.05 16 43 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.06 1.24 7.98 -51.93 -0.41 0.83 16 45 H 0.05 1.02 7.85 -51.93 -0.41 0.61 16 LS Contribution 346.51 15.07 5.22 5.22 Total: -1.00 -28.98 346.51 -10.58 -39.56 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: -7.53 Total: 9.11 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -1.99 Total: -0.45 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: -1.33 Total: -59.22 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.98 -10.58 -39.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098401878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.171 kcal (2) G-P(sol) polarization free energy of solvation -28.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds