Wall clock time and date at job start Tue Mar 31 2020 07:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47205 * 269.99659 * 3 2 1 5 5 H 1.48497 * 109.47466 * 29.99675 * 3 2 1 6 6 H 1.48498 * 109.47333 * 150.00093 * 3 2 1 7 7 C 1.38815 * 120.00342 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00293 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99377 * 0.02562 * 7 2 1 10 10 C 1.50235 * 130.83958 * 359.97438 * 9 7 2 11 11 H 1.08998 * 116.46246 * 0.02562 * 10 9 7 12 12 C 1.55845 * 101.05038 * 233.96847 * 10 9 7 13 13 C 1.54857 * 103.44686 * 327.06615 * 12 10 9 14 14 C 1.50240 * 130.83272 * 180.02562 * 9 7 2 15 15 H 1.08995 * 115.86154 * 0.34729 * 14 9 7 16 16 C 1.55848 * 101.74715 * 234.15310 * 14 9 7 17 17 H 1.09005 * 110.62507 * 208.33950 * 16 14 9 18 18 N 1.46495 * 110.62853 * 85.32211 * 16 14 9 19 19 C 1.34776 * 120.00504 * 154.99687 * 18 16 14 20 20 O 1.21280 * 119.99881 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00457 * 179.97438 * 19 18 16 22 22 N 1.46900 * 109.47256 * 179.97438 * 21 19 18 23 23 C 1.48531 * 110.99611 * 52.60543 * 22 21 19 24 24 C 1.54939 * 103.22297 * 159.72048 * 23 22 21 25 25 C 1.54601 * 102.92257 * 322.58408 * 24 23 22 26 26 C 1.47902 * 110.99795 * 170.00061 * 22 21 19 27 27 C 1.54849 * 103.44934 * 326.83017 * 16 14 9 28 28 H 0.97005 * 120.00189 * 0.02562 * 1 2 3 29 29 H 1.08997 * 110.62893 * 208.57539 * 12 10 9 30 30 H 1.09004 * 110.62404 * 85.55379 * 12 10 9 31 31 H 1.09004 * 110.62191 * 118.48708 * 13 12 10 32 32 H 1.08997 * 110.62718 * 241.34508 * 13 12 10 33 33 H 0.97009 * 119.99906 * 334.99842 * 18 16 14 34 34 H 1.08990 * 109.47208 * 300.00393 * 21 19 18 35 35 H 1.09007 * 109.46785 * 60.00287 * 21 19 18 36 36 H 1.08995 * 110.66997 * 278.15088 * 23 22 21 37 37 H 1.08995 * 110.66793 * 41.28684 * 23 22 21 38 38 H 1.09000 * 110.72346 * 204.23051 * 24 23 22 39 39 H 1.09000 * 110.88003 * 81.01466 * 24 23 22 40 40 H 1.09002 * 110.30596 * 263.04480 * 25 24 23 41 41 H 1.09000 * 110.39138 * 140.91739 * 25 24 23 42 42 H 1.08996 * 109.91935 * 333.51096 * 26 22 21 43 43 H 1.08998 * 109.91750 * 94.60927 * 26 22 21 44 44 H 1.08995 * 110.62609 * 118.48942 * 27 16 14 45 45 H 1.09007 * 110.62565 * 241.35478 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 -0.1500 -2.6705 0.0005 11 1 -0.8105 -1.8035 0.0001 12 6 -0.2743 -3.6104 1.2375 13 6 1.0668 -4.3846 1.2376 14 6 1.8187 -3.8072 0.0016 15 1 2.9012 -3.9343 0.0084 16 6 1.0798 -4.4008 -1.2356 17 1 0.9163 -5.4710 -1.1082 18 7 1.8335 -4.1351 -2.4634 19 6 1.6836 -4.9403 -3.5337 20 8 0.9252 -5.8852 -3.4803 21 6 2.4585 -4.6666 -4.7970 22 7 2.1217 -5.6787 -5.8070 23 6 0.6514 -5.7751 -5.9942 24 6 0.5143 -6.4421 -7.3860 25 6 1.6720 -5.8064 -8.1896 26 6 2.6734 -5.3119 -7.1294 27 6 -0.2692 -3.6406 -1.2483 28 1 -0.4851 0.8401 -0.0004 29 1 -1.1132 -4.2956 1.1164 30 1 -0.3816 -3.0282 2.1528 31 1 1.6245 -4.1864 2.1529 32 1 0.8928 -5.4541 1.1194 33 1 2.4404 -3.3796 -2.5060 34 1 2.2010 -3.6769 -5.1739 35 1 3.5267 -4.7078 -4.5840 36 1 0.2055 -6.4017 -5.2219 37 1 0.1981 -4.7839 -5.9963 38 1 -0.4476 -6.1987 -7.8373 39 1 0.6425 -7.5221 -7.3136 40 1 1.3053 -4.9690 -8.7832 41 1 2.1401 -6.5502 -8.8343 42 1 2.7834 -4.2297 -7.1986 43 1 3.6405 -5.7933 -7.2747 44 1 -0.3774 -3.0659 -2.1681 45 1 -1.1019 -4.3341 -1.1299 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098401878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:30 Heat of formation + Delta-G solvation = -0.172176 kcal Electronic energy + Delta-G solvation = -24569.181214 eV Core-core repulsion = 21200.999060 eV Total energy + Delta-G solvation = -3368.182154 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.35949 -40.31835 -38.84083 -35.26602 -34.41032 -33.26364 -30.96299 -30.40056 -29.73403 -29.55267 -27.22954 -26.07246 -23.10939 -22.15860 -21.69698 -21.49122 -21.16830 -20.25758 -18.83274 -18.03293 -17.47807 -16.85495 -16.75344 -16.43659 -16.17971 -15.74850 -15.35589 -14.89440 -14.85462 -14.29658 -14.10800 -13.71275 -13.65340 -13.36527 -13.11513 -12.91207 -12.85585 -12.75800 -12.69516 -12.46661 -12.21357 -12.09316 -11.95953 -11.93067 -11.87909 -11.66866 -11.45327 -11.15781 -10.94713 -10.84540 -10.46714 -9.91443 -9.41401 -8.86690 -7.75976 -5.15634 1.49490 1.50519 1.58422 1.68983 2.20730 2.50658 3.09153 3.37754 3.46214 3.71002 3.76750 3.96680 4.03415 4.08238 4.11709 4.27697 4.29291 4.34307 4.40454 4.44950 4.50110 4.62564 4.64666 4.69599 4.75497 4.83098 4.91496 4.94427 4.99068 5.08883 5.12908 5.16697 5.18100 5.25884 5.31064 5.38174 5.52459 5.60597 5.73786 5.86939 5.90422 5.96887 6.25814 6.69048 7.06303 7.34652 7.72750 8.59001 9.31737 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017675 B = 0.004212 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.763535 B = 6645.292124 C = 7565.207287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.974 3.026 4 H -0.290 1.290 5 H -0.302 1.302 6 H -0.271 1.271 7 C -0.215 4.215 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.143 3.857 11 H 0.115 0.885 12 C -0.133 4.133 13 C -0.120 4.120 14 C 0.128 3.872 15 H 0.101 0.899 16 C 0.142 3.858 17 H 0.085 0.915 18 N -0.706 5.706 19 C 0.508 3.492 20 O -0.568 6.568 21 C 0.031 3.969 22 N -0.516 5.516 23 C 0.031 3.969 24 C -0.122 4.122 25 C -0.126 4.126 26 C 0.030 3.970 27 C -0.135 4.135 28 H 0.245 0.755 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.125 0.875 36 H 0.083 0.917 37 H 0.025 0.975 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.032 0.968 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -10.466 -11.309 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.259 4.259 3 Si 0.804 3.196 4 H -0.217 1.217 5 H -0.229 1.229 6 H -0.196 1.196 7 C -0.343 4.343 8 H 0.104 0.896 9 N -0.330 5.330 10 C 0.036 3.964 11 H 0.132 0.868 12 C -0.172 4.172 13 C -0.160 4.160 14 C 0.021 3.979 15 H 0.119 0.881 16 C 0.035 3.965 17 H 0.103 0.897 18 N -0.356 5.356 19 C 0.295 3.705 20 O -0.447 6.447 21 C -0.100 4.100 22 N -0.241 5.241 23 C -0.097 4.097 24 C -0.160 4.160 25 C -0.164 4.164 26 C -0.097 4.097 27 C -0.176 4.176 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.241 0.759 34 H 0.090 0.910 35 H 0.143 0.857 36 H 0.102 0.898 37 H 0.043 0.957 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.051 0.949 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.485 -11.296 -11.061 16.434 hybrid contribution -0.024 2.405 0.039 2.406 sum 4.461 -8.891 -11.022 14.847 Atomic orbital electron populations 1.69741 1.06254 1.24785 1.59037 1.25425 0.96284 1.00351 1.03840 0.85128 0.77587 0.79735 0.77157 1.21694 1.22910 1.19592 1.19363 0.90791 0.82900 1.41273 0.89588 1.46669 1.02238 0.99677 1.84402 1.24048 0.86709 0.94634 0.90992 0.86790 1.22970 0.97306 0.98061 0.98883 1.22829 0.96249 0.98928 0.97966 1.23315 0.97088 0.84502 0.93014 0.88080 1.22355 0.91611 0.98249 0.84304 0.89688 1.45971 1.45603 1.30958 1.13035 1.20927 0.82234 0.81868 0.85484 1.90590 1.39604 1.31180 1.83339 1.22246 1.02001 0.95269 0.90489 1.64681 1.10317 1.42919 1.06169 1.23386 0.88431 0.99162 0.98720 1.22508 0.99182 1.00553 0.93779 1.22403 0.95523 1.01179 0.97308 1.23044 0.99674 0.99549 0.87449 1.23773 0.96680 0.97885 0.99234 0.94551 0.91178 0.94353 0.92239 0.90123 0.75936 0.91030 0.85704 0.89844 0.95671 0.90223 0.90876 0.90631 0.89487 0.93079 0.89085 0.94943 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.24 10.48 21.65 0.23 -54.01 16 2 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.97 43.81 29.55 68.60 2.03 45.84 16 4 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.21 -10.99 10.59 84.03 0.89 -10.10 16 8 H 0.09 4.16 7.83 -2.91 -0.02 4.14 16 9 N -0.61 -28.26 3.00 -610.09 -1.83 -30.10 16 10 C 0.14 6.53 4.81 47.25 0.23 6.76 16 11 H 0.11 6.17 5.57 -2.39 -0.01 6.15 16 12 C -0.13 -5.13 6.43 32.21 0.21 -4.92 16 13 C -0.12 -4.07 6.43 32.19 0.21 -3.87 16 14 C 0.13 4.71 5.01 46.20 0.23 4.95 16 15 H 0.10 3.42 8.14 -2.39 -0.02 3.41 16 16 C 0.14 5.06 2.81 46.61 0.13 5.19 16 17 H 0.09 3.02 7.22 -2.38 -0.02 3.00 16 18 N -0.71 -23.08 5.07 -434.92 -2.21 -25.28 16 19 C 0.51 16.30 7.54 87.66 0.66 16.96 16 20 O -0.57 -21.65 13.17 -3.03 -0.04 -21.69 16 21 C 0.03 0.77 5.52 85.56 0.47 1.24 16 22 N -0.52 -13.00 5.26 -887.60 -4.67 -17.67 16 23 C 0.03 0.82 5.30 86.65 0.46 1.28 16 24 C -0.12 -2.42 7.06 31.80 0.22 -2.20 16 25 C -0.13 -2.02 6.93 31.47 0.22 -1.80 16 26 C 0.03 0.56 6.69 86.44 0.58 1.14 16 27 C -0.14 -5.47 6.33 33.23 0.21 -5.26 16 28 H 0.24 13.83 8.31 -92.70 -0.77 13.06 16 29 H 0.07 2.37 7.84 -2.39 -0.02 2.35 16 30 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 32 H 0.08 2.31 7.80 -2.39 -0.02 2.29 16 33 H 0.41 12.74 8.66 -92.70 -0.80 11.93 16 34 H 0.07 1.66 7.81 -2.39 -0.02 1.65 16 35 H 0.13 2.51 8.14 -2.38 -0.02 2.49 16 36 H 0.08 2.76 5.97 -2.39 -0.01 2.74 16 37 H 0.02 0.71 8.02 -2.39 -0.02 0.69 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 41 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 0.88 7.57 -2.39 -0.02 0.86 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 44 H 0.03 1.44 7.98 -2.39 -0.02 1.42 16 45 H 0.06 2.42 7.85 -2.38 -0.02 2.40 16 Total: -1.00 -63.30 346.51 -1.14 -64.43 By element: Atomic # 1 Polarization: 32.03 SS G_CDS: 0.17 Total: 32.20 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: 5.18 Total: 6.28 kcal Atomic # 7 Polarization: -118.58 SS G_CDS: -8.48 Total: -127.06 kcal Atomic # 8 Polarization: -21.65 SS G_CDS: -0.04 Total: -21.69 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -63.30 -1.14 -64.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098401878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.261 kcal (2) G-P(sol) polarization free energy of solvation -63.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds