Wall clock time and date at job start Tue Mar 31 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48496 * 109.47233 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47074 * 119.99823 * 3 2 1 6 6 H 1.48501 * 109.46998 * 239.99519 * 3 2 1 7 7 C 1.37880 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99601 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.46951 * 110.99722 * 293.79712 * 10 9 7 12 12 C 1.53051 * 109.36000 * 176.81163 * 11 10 9 13 13 N 1.46954 * 109.36791 * 58.40592 * 12 11 10 14 14 C 1.46903 * 111.00279 * 176.81013 * 13 12 11 15 15 H 1.09000 * 110.43395 * 305.51057 * 14 13 12 16 16 C 1.54635 * 110.48475 * 68.18932 * 14 13 12 17 17 C 1.54480 * 101.75995 * 143.47540 * 16 14 13 18 18 N 1.46756 * 105.47659 * 334.58510 * 17 16 14 19 19 C 1.46509 * 124.34845 * 197.03969 * 18 17 16 20 20 C 1.53004 * 117.49621 * 188.62351 * 19 18 17 21 21 C 1.52991 * 117.49857 * 120.00221 * 19 18 17 22 22 C 1.34418 * 111.30270 * 17.01256 * 18 17 16 23 23 O 1.21276 * 124.94253 * 179.55179 * 22 18 17 24 24 C 1.46961 * 110.87363 * 300.67474 * 13 12 11 25 25 C 1.46958 * 110.99735 * 169.99786 * 10 9 7 26 26 H 0.97006 * 119.99837 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47231 * 299.99364 * 9 7 2 28 28 H 1.09001 * 109.47436 * 59.99321 * 9 7 2 29 29 H 1.08997 * 109.48937 * 296.77706 * 11 10 9 30 30 H 1.08996 * 109.49012 * 56.84876 * 11 10 9 31 31 H 1.09003 * 109.48977 * 298.43119 * 12 11 10 32 32 H 1.09005 * 109.48862 * 178.37001 * 12 11 10 33 33 H 1.08996 * 110.96737 * 261.59625 * 16 14 13 34 34 H 1.09006 * 110.96820 * 25.36061 * 16 14 13 35 35 H 1.09002 * 110.24479 * 215.58013 * 17 16 14 36 36 H 1.08999 * 110.31494 * 93.62893 * 17 16 14 37 37 H 1.08999 * 115.54628 * 334.32741 * 19 18 17 38 38 H 1.09001 * 117.49856 * 359.97438 * 20 19 18 39 39 H 1.08994 * 117.49756 * 145.02106 * 20 19 18 40 40 H 1.08999 * 117.50026 * 214.97710 * 21 19 18 41 41 H 1.09003 * 117.50254 * 359.97438 * 21 19 18 42 42 H 1.08992 * 109.49441 * 299.35218 * 24 13 12 43 43 H 1.09001 * 109.48416 * 179.28817 * 24 13 12 44 44 H 1.08997 * 109.49040 * 303.15023 * 25 10 9 45 45 H 1.08998 * 109.48837 * 63.22319 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9686 -3.6562 -1.2548 12 6 4.0041 -4.7810 -1.1831 13 7 3.3194 -6.0593 -0.9449 14 6 4.2740 -7.1759 -0.9449 15 1 4.8556 -7.1793 -1.8667 16 6 5.2060 -7.0911 0.2861 17 6 5.3837 -8.5819 0.6498 18 7 4.1886 -9.2569 0.1303 19 6 3.7488 -10.5924 0.5421 20 6 2.5999 -11.2305 -0.2413 21 6 2.3634 -10.7146 1.1795 22 6 3.5490 -8.4922 -0.7713 23 8 2.5382 -8.8115 -1.3606 24 6 2.5564 -6.0187 0.3105 25 6 1.5208 -4.8940 0.2388 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5567 0.8904 28 1 0.6246 -2.5570 -0.8896 29 1 2.2894 -3.8397 -2.0873 30 1 3.4765 -2.7032 -1.4025 31 1 4.6997 -4.5835 -0.3674 32 1 4.5517 -4.8317 -2.1242 33 1 6.1611 -6.6374 0.0217 34 1 4.7285 -6.5453 1.1000 35 1 5.4445 -8.7016 1.7315 36 1 6.2795 -8.9829 0.1756 37 1 4.5334 -11.2522 0.9126 38 1 2.1710 -10.6566 -1.0627 39 1 2.6284 -12.3104 -0.3863 40 1 2.2363 -11.4551 1.9692 41 1 1.7792 -9.8014 1.2930 42 1 3.2355 -5.8353 1.1431 43 1 2.0485 -6.9717 0.4583 44 1 0.9734 -4.8433 1.1800 45 1 0.8253 -5.0914 -0.5768 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119312572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:27 Heat of formation + Delta-G solvation = 27.061371 kcal Electronic energy + Delta-G solvation = -24501.027908 eV Core-core repulsion = 21134.026689 eV Total energy + Delta-G solvation = -3367.001219 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.10740 -38.61807 -36.73096 -36.41647 -34.47914 -32.45379 -30.47349 -30.16752 -28.28789 -26.57320 -24.64100 -23.20937 -22.93573 -22.59171 -22.19985 -21.13867 -19.15075 -18.89025 -17.17663 -16.83546 -16.24819 -15.76625 -15.50164 -14.84471 -14.58839 -14.43391 -14.16017 -14.08992 -13.87593 -13.60412 -13.49582 -13.18939 -12.93807 -12.53293 -12.12702 -12.04070 -11.69306 -11.63566 -11.50488 -11.22045 -11.14665 -10.81867 -10.73096 -10.64392 -10.59838 -10.41177 -10.32174 -9.73369 -9.50812 -9.17252 -8.69982 -8.42507 -8.13812 -7.22070 -6.01101 -4.02862 2.40092 2.65524 3.33758 3.38025 3.40383 3.63449 3.85750 4.16667 4.42880 4.45451 4.55178 4.63244 4.67577 4.78019 4.89073 4.96766 5.16824 5.24054 5.30462 5.34341 5.38701 5.45032 5.50129 5.54096 5.64332 5.75293 5.80187 5.87489 5.93863 6.06135 6.08356 6.19593 6.46204 6.49091 6.60022 6.69156 6.88137 7.12310 7.13734 7.35378 7.39203 7.80400 8.10197 8.12099 8.21954 8.56020 9.04241 9.61169 11.09759 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032995 B = 0.003313 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.398292 B = 8449.850876 C = 8809.709052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.538 5.538 11 C 0.067 3.933 12 C 0.059 3.941 13 N -0.514 5.514 14 C 0.056 3.944 15 H 0.116 0.884 16 C -0.174 4.174 17 C 0.111 3.889 18 N -0.598 5.598 19 C 0.080 3.920 20 C -0.190 4.190 21 C -0.191 4.191 22 C 0.527 3.473 23 O -0.506 6.506 24 C 0.059 3.941 25 C 0.058 3.942 26 H 0.262 0.738 27 H 0.029 0.971 28 H -0.008 1.008 29 H 0.030 0.970 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.095 -20.527 1.713 23.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.214 1.214 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.263 5.263 11 C -0.062 4.062 12 C -0.069 4.069 13 N -0.238 5.238 14 C -0.057 4.057 15 H 0.134 0.866 16 C -0.214 4.214 17 C -0.012 4.012 18 N -0.332 5.332 19 C -0.024 4.024 20 C -0.228 4.228 21 C -0.230 4.230 22 C 0.314 3.686 23 O -0.380 6.380 24 C -0.069 4.069 25 C -0.071 4.071 26 H 0.071 0.929 27 H 0.048 0.952 28 H 0.010 0.990 29 H 0.049 0.951 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.355 -20.609 1.400 23.571 hybrid contribution 0.459 0.853 0.155 0.981 sum 11.814 -19.756 1.555 23.071 Atomic orbital electron populations 1.69953 1.06077 1.26875 1.50861 1.24995 0.94854 0.99293 0.95469 0.86563 0.79432 0.82811 0.78593 1.21382 1.20211 1.20271 1.21107 0.93378 0.89951 1.50228 0.91966 1.19698 0.90056 0.87220 0.96171 1.62308 1.28174 1.02697 1.33120 1.21997 0.95483 0.97233 0.91489 1.22292 0.96323 0.87946 1.00298 1.62181 1.23953 1.02418 1.35280 1.22450 0.93024 0.90933 0.99291 0.86596 1.23389 1.01972 0.95796 1.00199 1.22005 0.87263 0.92065 0.99915 1.47633 1.27271 1.15920 1.42375 1.21485 0.91641 0.84399 1.04843 1.23760 1.00795 1.00899 0.97321 1.23354 0.99307 1.03678 0.96622 1.20709 0.83685 0.86001 0.78236 1.90597 1.23403 1.75422 1.48543 1.22252 0.96008 0.98812 0.89833 1.22033 0.94705 0.89739 1.00639 0.92861 0.95248 0.99002 0.95132 0.89330 0.93838 0.90918 0.88871 0.88792 0.90325 0.90985 0.85527 0.84995 0.88633 0.88279 0.88610 0.93744 0.91567 0.90996 0.94920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.51 -14.24 8.47 -34.44 -0.29 -14.53 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 9 C 0.19 5.12 4.72 -4.98 -0.02 5.09 16 10 N -0.54 -11.74 4.70 -235.91 -1.11 -12.85 16 11 C 0.07 1.31 5.43 -3.77 -0.02 1.29 16 12 C 0.06 0.90 5.39 -3.77 -0.02 0.88 16 13 N -0.51 -7.84 4.73 -226.49 -1.07 -8.91 16 14 C 0.06 0.67 3.04 -67.72 -0.21 0.46 16 15 H 0.12 1.26 8.13 -51.93 -0.42 0.84 16 16 C -0.17 -1.56 5.68 -25.09 -0.14 -1.71 16 17 C 0.11 0.83 7.35 -3.13 -0.02 0.81 16 18 N -0.60 -6.24 3.27 -164.85 -0.54 -6.78 16 19 C 0.08 0.74 6.88 -67.93 -0.47 0.27 16 20 C -0.19 -1.95 9.77 -26.73 -0.26 -2.22 16 21 C -0.19 -1.84 10.34 -26.74 -0.28 -2.12 16 22 C 0.53 7.12 5.99 -10.86 -0.07 7.05 16 23 O -0.51 -8.63 14.62 5.56 0.08 -8.55 16 24 C 0.06 0.94 4.97 -3.76 -0.02 0.92 16 25 C 0.06 1.11 5.61 -3.77 -0.02 1.09 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 28 H -0.01 -0.22 8.12 -51.93 -0.42 -0.65 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.82 6.79 -51.93 -0.35 1.47 16 31 H 0.04 0.64 7.52 -51.93 -0.39 0.25 16 32 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.98 5.58 -51.93 -0.29 0.69 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.13 1.79 5.29 -51.93 -0.27 1.52 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.04 0.68 5.96 -51.93 -0.31 0.37 16 43 H 0.07 1.07 6.97 -51.93 -0.36 0.71 16 44 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -32.36 347.88 -11.01 -43.37 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -7.39 Total: -0.67 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -1.93 Total: -1.23 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -1.98 Total: -54.71 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.08 Total: -8.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.36 -11.01 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119312572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.429 kcal (2) G-P(sol) polarization free energy of solvation -32.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds