Wall clock time and date at job start Tue Mar 31 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00009 * 2 1 4 4 H 1.48496 * 109.47233 * 359.97438 * 3 2 1 5 5 H 1.48506 * 109.47074 * 119.99823 * 3 2 1 6 6 H 1.48501 * 109.46998 * 239.99519 * 3 2 1 7 7 C 1.37880 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99601 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47085 * 179.97438 * 9 7 2 11 11 C 1.46951 * 110.99722 * 293.79712 * 10 9 7 12 12 C 1.53051 * 109.36000 * 176.81163 * 11 10 9 13 13 N 1.46954 * 109.36791 * 58.40592 * 12 11 10 14 14 C 1.46903 * 111.00279 * 176.81013 * 13 12 11 15 15 H 1.09000 * 110.43395 * 305.51057 * 14 13 12 16 16 C 1.54635 * 110.48475 * 68.18932 * 14 13 12 17 17 C 1.54480 * 101.75995 * 143.47540 * 16 14 13 18 18 N 1.46756 * 105.47659 * 334.58510 * 17 16 14 19 19 C 1.46509 * 124.34845 * 197.03969 * 18 17 16 20 20 C 1.53004 * 117.49621 * 188.62351 * 19 18 17 21 21 C 1.52991 * 117.49857 * 120.00221 * 19 18 17 22 22 C 1.34418 * 111.30270 * 17.01256 * 18 17 16 23 23 O 1.21276 * 124.94253 * 179.55179 * 22 18 17 24 24 C 1.46961 * 110.87363 * 300.67474 * 13 12 11 25 25 C 1.46958 * 110.99735 * 169.99786 * 10 9 7 26 26 H 0.97006 * 119.99837 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.47231 * 299.99364 * 9 7 2 28 28 H 1.09001 * 109.47436 * 59.99321 * 9 7 2 29 29 H 1.08997 * 109.48937 * 296.77706 * 11 10 9 30 30 H 1.08996 * 109.49012 * 56.84876 * 11 10 9 31 31 H 1.09003 * 109.48977 * 298.43119 * 12 11 10 32 32 H 1.09005 * 109.48862 * 178.37001 * 12 11 10 33 33 H 1.08996 * 110.96737 * 261.59625 * 16 14 13 34 34 H 1.09006 * 110.96820 * 25.36061 * 16 14 13 35 35 H 1.09002 * 110.24479 * 215.58013 * 17 16 14 36 36 H 1.08999 * 110.31494 * 93.62893 * 17 16 14 37 37 H 1.08999 * 115.54628 * 334.32741 * 19 18 17 38 38 H 1.09001 * 117.49856 * 359.97438 * 20 19 18 39 39 H 1.08994 * 117.49756 * 145.02106 * 20 19 18 40 40 H 1.08999 * 117.50026 * 214.97710 * 21 19 18 41 41 H 1.09003 * 117.50254 * 359.97438 * 21 19 18 42 42 H 1.08992 * 109.49441 * 299.35218 * 24 13 12 43 43 H 1.09001 * 109.48416 * 179.28817 * 24 13 12 44 44 H 1.08997 * 109.49040 * 303.15023 * 25 10 9 45 45 H 1.08998 * 109.48837 * 63.22319 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9686 -3.6562 -1.2548 12 6 4.0041 -4.7810 -1.1831 13 7 3.3194 -6.0593 -0.9449 14 6 4.2740 -7.1759 -0.9449 15 1 4.8556 -7.1793 -1.8667 16 6 5.2060 -7.0911 0.2861 17 6 5.3837 -8.5819 0.6498 18 7 4.1886 -9.2569 0.1303 19 6 3.7488 -10.5924 0.5421 20 6 2.5999 -11.2305 -0.2413 21 6 2.3634 -10.7146 1.1795 22 6 3.5490 -8.4922 -0.7713 23 8 2.5382 -8.8115 -1.3606 24 6 2.5564 -6.0187 0.3105 25 6 1.5208 -4.8940 0.2388 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5567 0.8904 28 1 0.6246 -2.5570 -0.8896 29 1 2.2894 -3.8397 -2.0873 30 1 3.4765 -2.7032 -1.4025 31 1 4.6997 -4.5835 -0.3674 32 1 4.5517 -4.8317 -2.1242 33 1 6.1611 -6.6374 0.0217 34 1 4.7285 -6.5453 1.1000 35 1 5.4445 -8.7016 1.7315 36 1 6.2795 -8.9829 0.1756 37 1 4.5334 -11.2522 0.9126 38 1 2.1710 -10.6566 -1.0627 39 1 2.6284 -12.3104 -0.3863 40 1 2.2363 -11.4551 1.9692 41 1 1.7792 -9.8014 1.2930 42 1 3.2355 -5.8353 1.1431 43 1 2.0485 -6.9717 0.4583 44 1 0.9734 -4.8433 1.1800 45 1 0.8253 -5.0914 -0.5768 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119312572.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:27 Heat of formation + Delta-G solvation = 3.275357 kcal Electronic energy + Delta-G solvation = -24502.059347 eV Core-core repulsion = 21134.026689 eV Total energy + Delta-G solvation = -3368.032658 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04879 -39.94734 -37.70575 -37.53192 -35.85481 -34.45310 -31.93680 -31.27246 -29.62807 -28.05477 -26.16210 -24.56807 -23.80035 -23.72487 -23.31719 -22.55699 -20.42009 -19.97870 -18.50715 -18.07974 -17.70110 -16.90477 -16.56433 -16.33732 -15.98075 -15.82918 -15.59514 -15.25989 -15.06168 -14.82106 -14.65552 -14.30646 -14.14286 -13.94096 -13.55414 -13.26873 -13.10747 -12.86282 -12.59104 -12.57608 -12.52077 -12.42237 -12.15636 -12.14537 -12.00818 -11.71395 -11.50554 -11.37486 -11.23717 -10.61530 -10.51222 -9.50925 -9.30085 -9.07976 -8.20376 -6.31653 1.41913 1.42305 1.46223 1.54036 1.88300 2.40792 2.78841 2.88916 3.11615 3.24058 3.31318 3.67214 3.76389 3.88310 3.95615 3.99673 4.01495 4.11905 4.17585 4.26224 4.31137 4.45279 4.58340 4.60054 4.63336 4.73912 4.76800 4.78081 4.85683 4.94902 5.01288 5.01977 5.03834 5.14222 5.21943 5.24407 5.27442 5.62812 5.70697 5.88464 5.94496 6.03746 6.13443 6.30209 6.55861 6.83966 7.17809 7.38336 8.91187 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032995 B = 0.003313 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.398292 B = 8449.850876 C = 8809.709052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.069 0.931 9 C 0.208 3.792 10 N -0.535 5.535 11 C 0.065 3.935 12 C 0.073 3.927 13 N -0.536 5.536 14 C 0.054 3.946 15 H 0.133 0.867 16 C -0.164 4.164 17 C 0.110 3.890 18 N -0.595 5.595 19 C 0.086 3.914 20 C -0.204 4.204 21 C -0.192 4.192 22 C 0.514 3.486 23 O -0.555 6.555 24 C 0.078 3.922 25 C 0.057 3.943 26 H 0.264 0.736 27 H 0.002 0.998 28 H -0.045 1.045 29 H 0.008 0.992 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.167 0.833 38 H 0.095 0.905 39 H 0.119 0.881 40 H 0.125 0.875 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.069 0.931 45 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.081 -21.439 2.674 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.199 4.199 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.088 0.912 9 C 0.081 3.919 10 N -0.260 5.260 11 C -0.063 4.063 12 C -0.054 4.054 13 N -0.261 5.261 14 C -0.058 4.058 15 H 0.150 0.850 16 C -0.203 4.203 17 C -0.011 4.011 18 N -0.328 5.328 19 C -0.017 4.017 20 C -0.241 4.241 21 C -0.231 4.231 22 C 0.302 3.698 23 O -0.433 6.433 24 C -0.050 4.050 25 C -0.072 4.072 26 H 0.073 0.927 27 H 0.020 0.980 28 H -0.027 1.027 29 H 0.026 0.974 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.184 0.816 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges 15.396 -21.554 2.385 26.595 hybrid contribution -0.843 1.055 -0.162 1.360 sum 14.553 -20.499 2.223 25.238 Atomic orbital electron populations 1.70107 1.08008 1.28037 1.51697 1.26005 0.95740 1.03511 0.94682 0.85359 0.78057 0.77419 0.79316 1.21125 1.18979 1.18942 1.21413 0.93781 0.90638 1.50219 0.91247 1.19368 0.90178 0.89242 0.93087 1.62269 1.26912 1.02363 1.34428 1.22048 0.95782 0.98986 0.89512 1.22151 0.94682 0.86154 1.02393 1.62037 1.25696 1.03471 1.34857 1.22546 0.92742 0.88722 1.01787 0.84986 1.23361 1.02110 0.97076 0.97766 1.22278 0.86807 0.90662 1.01373 1.47814 1.27595 1.16203 1.41140 1.21886 0.92245 0.84172 1.03447 1.23662 1.02185 1.01807 0.96463 1.23338 0.99642 1.03057 0.97038 1.21069 0.83362 0.86922 0.78464 1.90593 1.25602 1.76489 1.50611 1.21971 0.95344 0.96632 0.91084 1.22088 0.95586 0.89959 0.99559 0.92695 0.98029 1.02734 0.97386 0.90349 0.92318 0.88099 0.86022 0.90191 0.88353 0.87967 0.81591 0.88696 0.86321 0.85647 0.91681 0.92251 0.92025 0.91219 0.97278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.83 13.29 21.45 0.28 -57.55 16 2 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 3 Si 0.97 44.25 29.54 68.60 2.03 46.27 16 4 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.52 -29.91 8.47 25.60 0.22 -29.70 16 8 H 0.07 3.80 7.13 -2.91 -0.02 3.78 16 9 C 0.21 11.60 4.72 85.56 0.40 12.00 16 10 N -0.53 -24.18 4.70 -900.30 -4.23 -28.41 16 11 C 0.07 2.60 5.43 86.31 0.47 3.07 16 12 C 0.07 2.11 5.39 86.31 0.47 2.57 16 13 N -0.54 -15.89 4.73 -870.49 -4.12 -20.01 16 14 C 0.05 1.17 3.04 44.91 0.14 1.31 16 15 H 0.13 2.46 8.13 -2.39 -0.02 2.44 16 16 C -0.16 -2.29 5.68 31.65 0.18 -2.11 16 17 C 0.11 1.16 7.35 86.83 0.64 1.80 16 18 N -0.60 -10.91 3.27 -794.05 -2.60 -13.51 16 19 C 0.09 1.35 6.88 44.99 0.31 1.66 16 20 C -0.20 -4.06 9.77 30.59 0.30 -3.76 16 21 C -0.19 -3.51 10.34 30.59 0.32 -3.19 16 22 C 0.51 13.45 5.99 87.90 0.53 13.98 16 23 O -0.56 -19.65 14.62 -3.02 -0.04 -19.69 16 24 C 0.08 2.49 4.97 86.31 0.43 2.92 16 25 C 0.06 2.30 5.61 86.31 0.48 2.79 16 26 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 27 H 0.00 0.10 8.03 -2.38 -0.02 0.08 16 28 H -0.05 -2.79 8.12 -2.39 -0.02 -2.81 16 29 H 0.01 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.08 3.25 6.79 -2.39 -0.02 3.24 16 31 H 0.06 1.54 7.52 -2.39 -0.02 1.52 16 32 H 0.10 2.36 8.13 -2.38 -0.02 2.35 16 33 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 1.39 5.58 -2.38 -0.01 1.38 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.17 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 2.72 5.29 -2.39 -0.01 2.71 16 39 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 42 H 0.06 1.74 5.96 -2.39 -0.01 1.72 16 43 H 0.06 2.05 6.97 -2.39 -0.02 2.03 16 44 H 0.07 2.79 8.07 -2.39 -0.02 2.77 16 45 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 Total: -1.00 -75.46 347.88 -2.38 -77.84 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.97 Total: 11.35 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.34 Total: 3.71 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -10.66 Total: -119.48 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.04 Total: -19.69 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.27 kcal Total: -75.46 -2.38 -77.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119312572.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.116 kcal (2) G-P(sol) polarization free energy of solvation -75.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds