Wall clock time and date at job start Tue Mar 31 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 125.56361 * 2 1 4 4 C 1.39840 * 107.86384 * 179.97438 * 3 2 1 5 5 C 1.37871 * 107.08352 * 0.02562 * 4 3 2 6 6 C 1.46676 * 126.22855 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00159 * 174.31506 * 6 5 4 8 8 N 1.34782 * 120.00462 * 354.32446 * 6 5 4 9 9 C 1.46496 * 120.00227 * 185.07304 * 8 6 5 10 10 H 1.09002 * 109.47037 * 34.98912 * 9 8 6 11 11 C 1.52999 * 109.46949 * 274.99730 * 9 8 6 12 12 C 1.52997 * 109.47157 * 154.99586 * 9 8 6 13 13 C 1.53000 * 109.46922 * 294.99438 * 12 9 8 14 14 H 1.08998 * 109.47182 * 55.00611 * 13 12 9 15 15 C 1.53008 * 109.47097 * 174.99972 * 13 12 9 16 16 N 1.46499 * 109.47414 * 295.00303 * 13 12 9 17 17 C 1.36939 * 119.99927 * 155.00380 * 16 13 12 18 18 H 1.08004 * 120.00067 * 359.97438 * 17 16 13 19 19 C 1.38812 * 119.99695 * 180.02562 * 17 16 13 20 20 N 1.31615 * 120.00278 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99646 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47059 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46826 * 119.99848 * 21 19 17 24 24 H 1.48504 * 109.47099 * 239.99480 * 21 19 17 25 25 N 1.35529 * 125.56361 * 179.97438 * 2 1 3 26 26 C 1.46500 * 125.68185 * 0.05534 * 25 2 1 27 27 H 1.08995 * 109.47117 * 90.02473 * 1 2 3 28 28 H 1.09003 * 109.46977 * 210.02381 * 1 2 3 29 29 H 1.08999 * 109.46704 * 330.01537 * 1 2 3 30 30 H 1.07998 * 126.07068 * 0.24009 * 3 2 1 31 31 H 1.08002 * 126.45327 * 180.02562 * 4 3 2 32 32 H 0.96996 * 119.99623 * 5.06448 * 8 6 5 33 33 H 1.09007 * 109.47000 * 299.99637 * 11 9 8 34 34 H 1.09000 * 109.47236 * 59.99669 * 11 9 8 35 35 H 1.09004 * 109.47372 * 180.02562 * 11 9 8 36 36 H 1.08998 * 109.47223 * 54.99608 * 12 9 8 37 37 H 1.09006 * 109.46852 * 174.99972 * 12 9 8 38 38 H 1.08998 * 109.46583 * 60.00272 * 15 13 12 39 39 H 1.08997 * 109.46978 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47122 * 300.00434 * 15 13 12 41 41 H 0.96999 * 119.99739 * 334.99480 * 16 13 12 42 42 H 0.97001 * 120.00082 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47028 * 274.02349 * 26 25 2 44 44 H 1.09006 * 109.47176 * 34.01798 * 26 25 2 45 45 H 1.08997 * 109.47670 * 154.01752 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 0.0006 5 6 3.6122 -0.7019 0.0004 6 6 4.7860 -1.5815 0.0003 7 8 4.6441 -2.7856 0.1045 8 7 6.0219 -1.0561 -0.1150 9 6 7.1856 -1.9390 -0.2270 10 1 6.9136 -2.8283 -0.7954 11 6 7.6502 -2.3501 1.1716 12 6 8.3180 -1.2015 -0.9444 13 6 7.8985 -0.9004 -2.3846 14 1 6.9563 -0.3522 -2.3815 15 6 8.9779 -0.0553 -3.0641 16 7 7.7295 -2.1578 -3.1171 17 6 6.9000 -2.2100 -4.2055 18 1 6.3700 -1.3243 -4.5235 19 6 6.7395 -3.4016 -4.8992 20 7 7.3849 -4.4810 -4.5113 21 14 5.6074 -3.4729 -6.3834 22 1 5.0040 -2.1352 -6.6105 23 1 6.3870 -3.8748 -7.5817 24 1 4.5308 -4.4658 -6.1375 25 7 2.2953 -1.1025 0.0005 26 6 1.8243 -2.4897 0.0000 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8901 0.5136 30 1 1.9546 2.1268 0.0037 31 1 4.5025 1.3092 0.0011 32 1 6.1407 -0.0935 -0.1240 33 1 7.9222 -1.4607 1.7402 34 1 6.8434 -2.8754 1.6827 35 1 8.5164 -3.0066 1.0884 36 1 8.5297 -0.2671 -0.4246 37 1 9.2119 -1.8253 -0.9492 38 1 9.9200 -0.6035 -3.0672 39 1 8.6788 0.1596 -4.0900 40 1 9.1036 0.8802 -2.5191 41 1 8.2053 -2.9533 -2.8313 42 1 7.2725 -5.3138 -4.9959 43 1 1.6384 -2.8107 1.0249 44 1 0.9013 -2.5598 -0.5757 45 1 2.5825 -3.1308 -0.4497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133683405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:06 Heat of formation + Delta-G solvation = 8.294613 kcal Electronic energy + Delta-G solvation = -24336.678209 eV Core-core repulsion = 20968.863202 eV Total energy + Delta-G solvation = -3367.815007 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.34710 -39.04901 -36.70065 -34.46038 -32.93489 -32.11630 -31.75595 -30.45029 -28.56056 -26.59658 -26.38700 -26.21315 -23.58759 -22.31463 -21.01003 -20.09461 -19.64009 -19.05856 -17.59244 -17.06558 -15.92392 -15.62415 -15.20426 -14.71257 -14.34319 -14.00198 -13.91245 -13.57800 -13.38239 -13.21998 -13.11234 -12.89090 -12.85311 -12.64789 -12.13502 -12.01387 -11.92962 -11.84850 -11.79950 -11.68911 -11.54634 -11.00013 -10.81513 -10.57343 -10.38210 -10.16623 -9.84198 -9.59419 -9.56465 -8.84713 -8.70313 -8.65906 -7.93499 -6.87925 -5.69723 -2.97149 1.65722 2.72934 2.79054 3.46502 3.52223 3.54128 3.62083 3.75549 4.65181 4.76347 4.87171 4.97716 5.08123 5.21064 5.26771 5.39333 5.45924 5.47770 5.53875 5.55202 5.64963 5.65890 5.74417 5.78584 5.94095 5.99853 6.06462 6.13138 6.18567 6.22482 6.34341 6.41277 6.48239 6.61737 6.75891 6.83086 6.91108 6.99700 7.09284 7.12811 7.28834 7.77174 7.87613 8.48865 8.58205 9.60273 10.18044 10.52352 11.53170 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.005381 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.067106 B = 5202.618076 C = 6370.626530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.032 3.968 3 C -0.206 4.206 4 C -0.144 4.144 5 C -0.041 4.041 6 C 0.590 3.410 7 O -0.546 6.546 8 N -0.703 5.703 9 C 0.148 3.852 10 H 0.105 0.895 11 C -0.161 4.161 12 C -0.131 4.131 13 C 0.170 3.830 14 H 0.047 0.953 15 C -0.165 4.165 16 N -0.720 5.720 17 C -0.231 4.231 18 H 0.067 0.933 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.901 3.099 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.293 1.293 25 N -0.406 5.406 26 C 0.064 3.936 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.139 0.861 31 H 0.142 0.858 32 H 0.396 0.604 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.052 0.948 40 H 0.034 0.966 41 H 0.383 0.617 42 H 0.253 0.747 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 10.780 13.059 18.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.230 4.230 4 C -0.171 4.171 5 C -0.154 4.154 6 C 0.377 3.623 7 O -0.425 6.425 8 N -0.354 5.354 9 C 0.044 3.956 10 H 0.123 0.877 11 C -0.219 4.219 12 C -0.169 4.169 13 C 0.060 3.940 14 H 0.065 0.935 15 C -0.225 4.225 16 N -0.362 5.362 17 C -0.362 4.362 18 H 0.085 0.915 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.732 3.268 22 H -0.207 1.207 23 H -0.219 1.219 24 H -0.220 1.220 25 N -0.079 5.079 26 C -0.078 4.078 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.157 0.843 31 H 0.160 0.840 32 H 0.230 0.770 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.216 0.784 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -8.392 9.533 12.976 18.157 hybrid contribution -0.363 0.131 -0.904 0.983 sum -8.755 9.664 12.072 17.770 Atomic orbital electron populations 1.20349 0.88045 1.03144 1.02759 1.20504 0.93659 0.85972 1.08297 1.20540 0.92523 0.97511 1.12460 1.21266 0.97723 0.91994 1.06070 1.20151 0.84423 0.93637 1.17232 1.16900 0.82326 0.86732 0.76344 1.90776 1.86155 1.14949 1.50584 1.45606 1.05498 1.10101 1.74155 1.21040 0.84281 0.94689 0.95609 0.87725 1.22188 1.01474 1.01045 0.97223 1.22174 0.97682 0.99999 0.97090 1.20241 0.95768 0.89127 0.88825 0.93499 1.22451 1.00459 0.98445 1.01152 1.42405 1.54122 1.06745 1.32934 1.19218 1.18152 0.95149 1.03695 0.91458 1.24678 1.00635 0.95887 0.99676 1.69656 1.46082 1.00220 1.42107 0.86205 0.80352 0.77223 0.82995 1.20681 1.21948 1.22033 1.43738 1.04712 1.06543 1.52894 1.22273 1.02155 0.80013 1.03318 0.90863 0.91787 0.90057 0.84328 0.84036 0.76981 0.93121 0.92443 0.91739 0.91959 0.90534 0.93554 0.92934 0.94675 0.78367 0.93706 0.90851 0.90319 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 9.88 36.01 0.36 -0.37 16 2 C 0.03 0.40 6.87 -81.95 -0.56 -0.16 16 3 C -0.21 -2.56 10.71 -39.98 -0.43 -2.99 16 4 C -0.14 -1.95 10.35 -39.12 -0.41 -2.36 16 5 C -0.04 -0.65 6.88 -81.98 -0.56 -1.22 16 6 C 0.59 10.61 7.73 -12.85 -0.10 10.51 16 7 O -0.55 -11.55 14.32 5.19 0.07 -11.47 16 8 N -0.70 -10.99 4.43 -55.12 -0.24 -11.24 16 9 C 0.15 2.45 2.48 -67.93 -0.17 2.28 16 10 H 0.10 2.26 7.13 -51.93 -0.37 1.89 16 11 C -0.16 -2.28 9.48 37.16 0.35 -1.93 16 12 C -0.13 -2.02 4.29 -26.73 -0.11 -2.14 16 13 C 0.17 3.27 2.84 -67.93 -0.19 3.08 16 14 H 0.05 0.94 7.56 -51.93 -0.39 0.54 16 15 C -0.16 -2.92 9.49 37.16 0.35 -2.56 16 16 N -0.72 -17.85 4.49 -53.42 -0.24 -18.09 16 17 C -0.23 -6.49 9.93 -15.06 -0.15 -6.64 16 18 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.66 13.06 55.49 0.72 -27.94 16 21 Si 0.90 23.15 29.55 -169.99 -5.02 18.12 16 22 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 25 N -0.41 -5.95 3.16 -115.62 -0.37 -6.32 16 26 C 0.06 0.83 10.16 59.85 0.61 1.43 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.48 7.74 -51.93 -0.40 0.08 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.14 1.55 7.45 -52.49 -0.39 1.16 16 32 H 0.40 5.08 7.51 -40.82 -0.31 4.78 16 33 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.38 10.14 7.80 -40.82 -0.32 9.83 16 42 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.08 0.81 7.79 -51.93 -0.40 0.41 16 45 H 0.11 1.74 6.22 -51.93 -0.32 1.42 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -33.99 369.84 -8.14 -42.12 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -7.52 Total: 12.76 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.11 Total: -3.52 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.13 Total: -63.59 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.07 Total: -11.47 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.99 -8.14 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133683405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.419 kcal (2) G-P(sol) polarization free energy of solvation -33.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds