Wall clock time and date at job start Tue Mar 31 2020 07:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35450 * 125.56361 * 2 1 4 4 C 1.39840 * 107.86384 * 179.97438 * 3 2 1 5 5 C 1.37871 * 107.08352 * 0.02562 * 4 3 2 6 6 C 1.46676 * 126.22855 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00159 * 174.31506 * 6 5 4 8 8 N 1.34782 * 120.00462 * 354.32446 * 6 5 4 9 9 C 1.46496 * 120.00227 * 185.07304 * 8 6 5 10 10 H 1.09002 * 109.47037 * 34.98912 * 9 8 6 11 11 C 1.52999 * 109.46949 * 274.99730 * 9 8 6 12 12 C 1.52997 * 109.47157 * 154.99586 * 9 8 6 13 13 C 1.53000 * 109.46922 * 294.99438 * 12 9 8 14 14 H 1.08998 * 109.47182 * 55.00611 * 13 12 9 15 15 C 1.53008 * 109.47097 * 174.99972 * 13 12 9 16 16 N 1.46499 * 109.47414 * 295.00303 * 13 12 9 17 17 C 1.36939 * 119.99927 * 155.00380 * 16 13 12 18 18 H 1.08004 * 120.00067 * 359.97438 * 17 16 13 19 19 C 1.38812 * 119.99695 * 180.02562 * 17 16 13 20 20 N 1.31615 * 120.00278 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99646 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47059 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46826 * 119.99848 * 21 19 17 24 24 H 1.48504 * 109.47099 * 239.99480 * 21 19 17 25 25 N 1.35529 * 125.56361 * 179.97438 * 2 1 3 26 26 C 1.46500 * 125.68185 * 0.05534 * 25 2 1 27 27 H 1.08995 * 109.47117 * 90.02473 * 1 2 3 28 28 H 1.09003 * 109.46977 * 210.02381 * 1 2 3 29 29 H 1.08999 * 109.46704 * 330.01537 * 1 2 3 30 30 H 1.07998 * 126.07068 * 0.24009 * 3 2 1 31 31 H 1.08002 * 126.45327 * 180.02562 * 4 3 2 32 32 H 0.96996 * 119.99623 * 5.06448 * 8 6 5 33 33 H 1.09007 * 109.47000 * 299.99637 * 11 9 8 34 34 H 1.09000 * 109.47236 * 59.99669 * 11 9 8 35 35 H 1.09004 * 109.47372 * 180.02562 * 11 9 8 36 36 H 1.08998 * 109.47223 * 54.99608 * 12 9 8 37 37 H 1.09006 * 109.46852 * 174.99972 * 12 9 8 38 38 H 1.08998 * 109.46583 * 60.00272 * 15 13 12 39 39 H 1.08997 * 109.46978 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.47122 * 300.00434 * 15 13 12 41 41 H 0.96999 * 119.99739 * 334.99480 * 16 13 12 42 42 H 0.97001 * 120.00082 * 179.97438 * 20 19 17 43 43 H 1.09002 * 109.47028 * 274.02349 * 26 25 2 44 44 H 1.09006 * 109.47176 * 34.01798 * 26 25 2 45 45 H 1.08997 * 109.47670 * 154.01752 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 0.0006 5 6 3.6122 -0.7019 0.0004 6 6 4.7860 -1.5815 0.0003 7 8 4.6441 -2.7856 0.1045 8 7 6.0219 -1.0561 -0.1150 9 6 7.1856 -1.9390 -0.2270 10 1 6.9136 -2.8283 -0.7954 11 6 7.6502 -2.3501 1.1716 12 6 8.3180 -1.2015 -0.9444 13 6 7.8985 -0.9004 -2.3846 14 1 6.9563 -0.3522 -2.3815 15 6 8.9779 -0.0553 -3.0641 16 7 7.7295 -2.1578 -3.1171 17 6 6.9000 -2.2100 -4.2055 18 1 6.3700 -1.3243 -4.5235 19 6 6.7395 -3.4016 -4.8992 20 7 7.3849 -4.4810 -4.5113 21 14 5.6074 -3.4729 -6.3834 22 1 5.0040 -2.1352 -6.6105 23 1 6.3870 -3.8748 -7.5817 24 1 4.5308 -4.4658 -6.1375 25 7 2.2953 -1.1025 0.0005 26 6 1.8243 -2.4897 0.0000 27 1 -0.3633 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8901 0.5136 30 1 1.9546 2.1268 0.0037 31 1 4.5025 1.3092 0.0011 32 1 6.1407 -0.0935 -0.1240 33 1 7.9222 -1.4607 1.7402 34 1 6.8434 -2.8754 1.6827 35 1 8.5164 -3.0066 1.0884 36 1 8.5297 -0.2671 -0.4246 37 1 9.2119 -1.8253 -0.9492 38 1 9.9200 -0.6035 -3.0672 39 1 8.6788 0.1596 -4.0900 40 1 9.1036 0.8802 -2.5191 41 1 8.2053 -2.9533 -2.8313 42 1 7.2725 -5.3138 -4.9959 43 1 1.6384 -2.8107 1.0249 44 1 0.9013 -2.5598 -0.5757 45 1 2.5825 -3.1308 -0.4497 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133683405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:06 Heat of formation + Delta-G solvation = -14.083094 kcal Electronic energy + Delta-G solvation = -24337.648579 eV Core-core repulsion = 20968.863202 eV Total energy + Delta-G solvation = -3368.785377 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39494 -40.37218 -38.23593 -36.09150 -34.24443 -33.70192 -32.84262 -31.68193 -30.42043 -27.67325 -27.46211 -27.38485 -25.67466 -23.48636 -22.27779 -21.39130 -21.08876 -20.11921 -19.30740 -18.59529 -17.30464 -16.78602 -16.65899 -16.19148 -15.70260 -15.63425 -15.39860 -15.05960 -14.60676 -14.37151 -14.22893 -14.08648 -13.97047 -13.61108 -13.60432 -13.36055 -13.19033 -12.97419 -12.93608 -12.84348 -12.81065 -12.67399 -12.60841 -12.23745 -12.16830 -11.83428 -11.56455 -11.42171 -10.97668 -10.91437 -10.04408 -9.68571 -8.97183 -8.94692 -7.93441 -5.18434 0.52298 1.39834 1.41146 1.49995 1.68503 1.80994 2.41204 2.52260 2.54439 3.40908 3.76123 3.87711 3.92151 3.96612 4.02962 4.14770 4.28325 4.29985 4.40193 4.52362 4.55129 4.63308 4.69793 4.74773 4.79697 4.79927 4.84099 4.94724 5.03757 5.08999 5.11270 5.17923 5.23908 5.26381 5.34976 5.43217 5.50970 5.63049 5.65915 5.92264 6.04621 6.30226 6.33376 6.64711 7.30615 7.35744 8.16329 8.36194 9.30555 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011649 B = 0.005381 C = 0.004394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2403.067106 B = 5202.618076 C = 6370.626530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.038 3.962 3 C -0.218 4.218 4 C -0.132 4.132 5 C -0.090 4.090 6 C 0.580 3.420 7 O -0.594 6.594 8 N -0.692 5.692 9 C 0.151 3.849 10 H 0.046 0.954 11 C -0.150 4.150 12 C -0.117 4.117 13 C 0.163 3.837 14 H 0.041 0.959 15 C -0.155 4.155 16 N -0.731 5.731 17 C -0.223 4.223 18 H 0.068 0.932 19 C -0.078 4.078 20 N -0.968 5.968 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.301 1.301 25 N -0.420 5.420 26 C 0.065 3.935 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.411 0.589 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.043 0.957 39 H 0.028 0.972 40 H 0.077 0.923 41 H 0.370 0.630 42 H 0.247 0.753 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.839 14.117 13.944 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 C -0.241 4.241 4 C -0.159 4.159 5 C -0.202 4.202 6 C 0.369 3.631 7 O -0.476 6.476 8 N -0.343 5.343 9 C 0.047 3.953 10 H 0.064 0.936 11 C -0.209 4.209 12 C -0.155 4.155 13 C 0.055 3.945 14 H 0.059 0.941 15 C -0.215 4.215 16 N -0.372 5.372 17 C -0.355 4.355 18 H 0.085 0.915 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.789 3.211 22 H -0.193 1.193 23 H -0.217 1.217 24 H -0.228 1.228 25 N -0.094 5.094 26 C -0.076 4.076 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.186 0.814 31 H 0.183 0.817 32 H 0.248 0.752 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.202 0.798 42 H 0.056 0.944 43 H 0.104 0.896 44 H 0.124 0.876 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.127 12.964 13.872 21.067 hybrid contribution -0.183 -0.787 -1.117 1.378 sum -9.310 12.177 12.756 19.942 Atomic orbital electron populations 1.20518 0.85121 1.04826 1.03795 1.21304 0.95542 0.85294 1.05832 1.20978 0.91909 0.98908 1.12287 1.21672 0.99384 0.91029 1.03789 1.20121 0.84472 0.94426 1.21201 1.17377 0.83550 0.86528 0.75652 1.90744 1.86882 1.17019 1.52998 1.45481 1.04719 1.10755 1.73350 1.20851 0.84935 0.93073 0.96480 0.93604 1.22081 1.00869 1.02325 0.95594 1.22085 0.96855 1.01991 0.94609 1.20530 0.96309 0.87003 0.90679 0.94110 1.22295 0.99183 0.99915 1.00111 1.42606 1.53451 1.08434 1.32670 1.19529 1.17345 0.94780 1.03888 0.91450 1.25408 1.02874 0.95931 1.02776 1.69803 1.48149 1.00532 1.43539 0.85268 0.78406 0.77379 0.80021 1.19263 1.21744 1.22841 1.43985 1.04731 1.07373 1.53353 1.22239 1.01826 0.79341 1.04206 0.89977 0.90839 0.87712 0.81425 0.81712 0.75157 0.89926 0.94554 0.90970 0.87358 0.90268 0.93813 0.95241 0.90380 0.79811 0.94390 0.89646 0.87638 0.91095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.88 71.24 0.70 -0.47 16 2 C 0.04 0.86 6.87 41.34 0.28 1.14 16 3 C -0.22 -4.77 10.71 22.01 0.24 -4.54 16 4 C -0.13 -3.33 10.35 22.57 0.23 -3.09 16 5 C -0.09 -2.88 6.88 40.35 0.28 -2.61 16 6 C 0.58 21.67 7.73 86.45 0.67 22.34 16 7 O -0.59 -27.07 14.32 -4.34 -0.06 -27.13 16 8 N -0.69 -21.55 4.43 -446.50 -1.98 -23.53 16 9 C 0.15 5.04 2.48 44.99 0.11 5.16 16 10 H 0.05 2.10 7.13 -2.39 -0.02 2.09 16 11 C -0.15 -4.17 9.48 71.98 0.68 -3.48 16 12 C -0.12 -3.39 4.29 30.59 0.13 -3.26 16 13 C 0.16 6.09 2.84 44.99 0.13 6.22 16 14 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 15 C -0.16 -5.14 9.49 71.98 0.68 -4.46 16 16 N -0.73 -37.01 4.49 -322.93 -1.45 -38.46 16 17 C -0.22 -12.78 9.93 84.03 0.83 -11.95 16 18 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 19 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 20 N -0.97 -61.80 13.06 21.65 0.28 -61.52 16 21 Si 0.96 48.68 29.55 68.60 2.03 50.71 16 22 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.29 -14.52 7.11 99.48 0.71 -13.81 16 24 H -0.30 -15.50 7.11 99.48 0.71 -14.79 16 25 N -0.42 -12.21 3.16 -519.71 -1.64 -13.86 16 26 C 0.06 1.73 10.16 127.77 1.30 3.03 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 0.89 7.74 -2.39 -0.02 0.87 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 31 H 0.17 3.12 7.45 -2.91 -0.02 3.10 16 32 H 0.41 9.83 7.51 -92.71 -0.70 9.13 16 33 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.04 1.15 8.09 -2.39 -0.02 1.13 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.11 2.20 8.14 -2.39 -0.02 2.19 16 37 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.37 20.39 7.80 -92.71 -0.72 19.66 16 42 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.11 2.12 7.79 -2.38 -0.02 2.10 16 45 H 0.07 2.47 6.22 -2.39 -0.01 2.45 16 Total: -1.00 -78.70 369.84 3.48 -75.23 By element: Atomic # 1 Polarization: 39.17 SS G_CDS: -0.44 Total: 38.74 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 6.74 Total: -0.18 kcal Atomic # 7 Polarization: -132.57 SS G_CDS: -4.79 Total: -137.36 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.06 Total: -27.13 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -78.70 3.48 -75.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133683405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.146 kcal (2) G-P(sol) polarization free energy of solvation -78.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds