Wall clock time and date at job start Tue Mar 31 2020 07:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35450 * 125.56395 * 2 1 4 4 C 1.39836 * 107.86600 * 180.02562 * 3 2 1 5 5 C 1.37867 * 107.08464 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.23311 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99887 * 182.81752 * 6 5 4 8 8 N 1.34774 * 119.99759 * 2.82485 * 6 5 4 9 9 C 1.46505 * 119.99772 * 185.13159 * 8 6 5 10 10 H 1.09000 * 109.46803 * 29.89976 * 9 8 6 11 11 C 1.52999 * 109.47058 * 269.90173 * 9 8 6 12 12 C 1.52996 * 109.46855 * 149.89637 * 9 8 6 13 13 C 1.52996 * 109.47301 * 294.10425 * 12 9 8 14 14 H 1.09001 * 109.47530 * 306.21436 * 13 12 9 15 15 C 1.53005 * 109.47212 * 186.21230 * 13 12 9 16 16 N 1.46501 * 109.46947 * 66.22042 * 13 12 9 17 17 C 1.36939 * 119.99723 * 209.89903 * 16 13 12 18 18 H 1.07999 * 120.00245 * 7.63299 * 17 16 13 19 19 C 1.38812 * 119.99975 * 187.62907 * 17 16 13 20 20 N 1.31618 * 119.99905 * 6.37786 * 19 17 16 21 21 Si 1.86795 * 119.99906 * 186.36777 * 19 17 16 22 22 H 1.48508 * 109.47103 * 90.00668 * 21 19 17 23 23 H 1.48504 * 109.47361 * 210.00254 * 21 19 17 24 24 H 1.48501 * 109.47599 * 330.00426 * 21 19 17 25 25 N 1.35533 * 125.56450 * 180.31822 * 2 1 3 26 26 C 1.46501 * 125.68042 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47350 * 89.97434 * 1 2 3 28 28 H 1.09003 * 109.46952 * 209.96915 * 1 2 3 29 29 H 1.09001 * 109.47520 * 329.97011 * 1 2 3 30 30 H 1.08001 * 126.06397 * 0.06362 * 3 2 1 31 31 H 1.07995 * 126.45414 * 180.02562 * 4 3 2 32 32 H 0.96993 * 120.00478 * 5.12728 * 8 6 5 33 33 H 1.08995 * 109.47265 * 59.99761 * 11 9 8 34 34 H 1.09001 * 109.47120 * 180.02562 * 11 9 8 35 35 H 1.09005 * 109.46756 * 299.99839 * 11 9 8 36 36 H 1.09005 * 109.46965 * 174.10671 * 12 9 8 37 37 H 1.08999 * 109.47015 * 54.11066 * 12 9 8 38 38 H 1.09001 * 109.46771 * 60.00328 * 15 13 12 39 39 H 1.08997 * 109.47477 * 179.97438 * 15 13 12 40 40 H 1.09001 * 109.47041 * 300.00505 * 15 13 12 41 41 H 0.96998 * 120.00126 * 29.88552 * 16 13 12 42 42 H 0.97000 * 120.00032 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47493 * 274.43498 * 26 25 2 44 44 H 1.09004 * 109.47073 * 34.42813 * 26 25 2 45 45 H 1.08995 * 109.47209 * 154.42768 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6122 -0.7018 -0.0004 6 6 4.7860 -1.5814 -0.0013 7 8 4.6416 -2.7887 -0.0528 8 7 6.0244 -1.0526 0.0549 9 6 7.1980 -1.9220 -0.0593 10 1 6.9524 -2.7843 -0.6791 11 6 7.6177 -2.3977 1.3330 12 6 8.3485 -1.1439 -0.7008 13 6 7.9852 -0.7951 -2.1455 14 1 7.7020 -1.7028 -2.6783 15 6 9.1921 -0.1549 -2.8346 16 7 6.8627 0.1462 -2.1531 17 6 5.9779 0.1482 -3.1983 18 1 6.0332 -0.6213 -3.9541 19 6 5.0101 1.1393 -3.2864 20 7 5.0199 2.1460 -2.4386 21 14 3.6938 1.0445 -4.6084 22 1 2.5227 0.2940 -4.0880 23 1 3.2731 2.4173 -4.9876 24 1 4.2389 0.3467 -5.8007 25 7 2.2953 -1.1025 -0.0061 26 6 1.8242 -2.4897 -0.0133 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 1.9544 2.1268 0.0010 31 1 4.5023 1.3092 -0.0004 32 1 6.1386 -0.0964 0.1710 33 1 6.7980 -2.9520 1.7900 34 1 8.4912 -3.0442 1.2481 35 1 7.8633 -1.5353 1.9529 36 1 9.2509 -1.7553 -0.6906 37 1 8.5248 -0.2267 -0.1388 38 1 10.0273 -0.8551 -2.8289 39 1 8.9334 0.0932 -3.8639 40 1 9.4753 0.7529 -2.3018 41 1 6.7459 0.7678 -1.4177 42 1 4.3434 2.8384 -2.4999 43 1 1.6325 -2.8137 1.0096 44 1 0.9045 -2.5581 -0.5944 45 1 2.5850 -3.1294 -0.4605 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133683411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:11 Heat of formation + Delta-G solvation = 16.770126 kcal Electronic energy + Delta-G solvation = -25408.867802 eV Core-core repulsion = 22041.420321 eV Total energy + Delta-G solvation = -3367.447481 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.78018 -38.76869 -36.57793 -34.12936 -32.65934 -31.90570 -31.36162 -30.29767 -28.45624 -26.33375 -26.00632 -25.89486 -23.52119 -21.94664 -20.59786 -20.06062 -19.48434 -18.51832 -17.10474 -16.95167 -15.76231 -15.17879 -14.79837 -14.69321 -14.08109 -13.77829 -13.70525 -13.43237 -12.97452 -12.87852 -12.75328 -12.66523 -12.63526 -12.37169 -12.07962 -11.89816 -11.68782 -11.59980 -11.47156 -11.38090 -11.22067 -10.89770 -10.77340 -10.63883 -10.32062 -10.14465 -9.85418 -9.57920 -9.22025 -8.83077 -8.34455 -7.99345 -7.34514 -6.80284 -5.68091 -2.92688 2.18770 3.22155 3.40064 3.49875 3.54886 3.57460 4.03094 4.26732 4.69402 5.13039 5.19115 5.22627 5.41069 5.47560 5.52681 5.53603 5.61818 5.67154 5.73284 5.74364 5.90862 5.94021 5.98417 6.02223 6.07317 6.14974 6.20327 6.30043 6.31188 6.40548 6.48264 6.60568 6.68141 6.88066 6.93379 6.98545 7.12725 7.21839 7.51688 7.72691 7.82482 7.84544 8.27849 8.51921 8.96415 9.63185 10.16360 10.53408 11.53931 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.008203 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.687904 B = 3412.654979 C = 5028.944488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.024 3.976 3 C -0.205 4.205 4 C -0.084 4.084 5 C -0.055 4.055 6 C 0.605 3.395 7 O -0.579 6.579 8 N -0.686 5.686 9 C 0.154 3.846 10 H 0.084 0.916 11 C -0.162 4.162 12 C -0.134 4.134 13 C 0.170 3.830 14 H 0.048 0.952 15 C -0.163 4.163 16 N -0.712 5.712 17 C -0.234 4.234 18 H 0.061 0.939 19 C 0.004 3.996 20 N -0.919 5.919 21 Si 0.892 3.108 22 H -0.292 1.292 23 H -0.294 1.294 24 H -0.288 1.288 25 N -0.415 5.415 26 C 0.069 3.931 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.153 0.847 32 H 0.403 0.597 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.033 0.967 39 H 0.052 0.948 40 H 0.044 0.956 41 H 0.377 0.623 42 H 0.253 0.747 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 -5.136 8.423 9.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.092 4.092 3 C -0.230 4.230 4 C -0.110 4.110 5 C -0.166 4.166 6 C 0.395 3.605 7 O -0.462 6.462 8 N -0.336 5.336 9 C 0.049 3.951 10 H 0.102 0.898 11 C -0.220 4.220 12 C -0.173 4.173 13 C 0.060 3.940 14 H 0.066 0.934 15 C -0.223 4.223 16 N -0.354 5.354 17 C -0.365 4.365 18 H 0.079 0.921 19 C -0.192 4.192 20 N -0.567 5.567 21 Si 0.725 3.275 22 H -0.220 1.220 23 H -0.221 1.221 24 H -0.214 1.214 25 N -0.090 5.090 26 C -0.073 4.073 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.150 0.850 31 H 0.171 0.829 32 H 0.240 0.760 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.211 0.789 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.614 -6.375 8.194 10.507 hybrid contribution -0.816 0.767 -0.809 1.382 sum -2.430 -5.608 7.385 9.586 Atomic orbital electron populations 1.20278 0.88763 1.02564 1.02239 1.20353 0.93144 0.86302 1.09421 1.20518 0.93100 0.97043 1.12355 1.21452 0.97896 0.91733 0.99929 1.19914 0.83695 0.93798 1.19240 1.16791 0.82526 0.86283 0.74910 1.90648 1.86610 1.15178 1.53748 1.45467 1.04082 1.11305 1.72727 1.20799 0.84967 0.93789 0.95575 0.89797 1.22212 1.01164 1.01043 0.97604 1.22254 0.96849 1.00012 0.98213 1.20266 0.88359 0.93472 0.91919 0.93430 1.22432 0.98243 0.99927 1.01708 1.42323 1.27406 1.41394 1.24316 1.19062 1.07720 1.07358 1.02351 0.92087 1.24457 0.99421 0.96639 0.98709 1.69579 1.36162 1.12105 1.38865 0.86412 0.83059 0.76416 0.81640 1.21986 1.22088 1.21406 1.43522 1.04867 1.05719 1.54927 1.22121 1.01679 0.81064 1.02421 0.91427 0.92278 0.90371 0.84981 0.82911 0.75986 0.92536 0.92169 0.92781 0.90985 0.91757 0.94829 0.92926 0.93659 0.78931 0.93708 0.91716 0.91081 0.87635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.88 36.00 0.36 -0.69 16 2 C 0.02 0.42 6.87 -81.95 -0.56 -0.14 16 3 C -0.21 -3.92 10.71 -39.98 -0.43 -4.34 16 4 C -0.08 -1.73 10.01 -39.12 -0.39 -2.13 16 5 C -0.06 -1.14 6.89 -81.98 -0.56 -1.71 16 6 C 0.61 12.58 7.77 -12.85 -0.10 12.48 16 7 O -0.58 -12.81 14.20 5.19 0.07 -12.74 16 8 N -0.69 -12.55 3.64 -55.11 -0.20 -12.75 16 9 C 0.15 2.48 2.60 -67.93 -0.18 2.31 16 10 H 0.08 1.54 7.49 -51.93 -0.39 1.15 16 11 C -0.16 -2.18 9.52 37.16 0.35 -1.82 16 12 C -0.13 -2.03 4.43 -26.74 -0.12 -2.15 16 13 C 0.17 3.20 2.90 -67.93 -0.20 3.00 16 14 H 0.05 0.97 8.03 -51.93 -0.42 0.55 16 15 C -0.16 -2.86 9.52 37.16 0.35 -2.51 16 16 N -0.71 -16.11 3.68 -53.42 -0.20 -16.31 16 17 C -0.23 -6.18 9.92 -15.06 -0.15 -6.33 16 18 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 20 N -0.92 -24.83 12.29 55.49 0.68 -24.15 16 21 Si 0.89 22.73 29.56 -169.99 -5.02 17.70 16 22 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 25 N -0.42 -7.81 3.16 -115.62 -0.37 -8.18 16 26 C 0.07 1.07 10.24 59.85 0.61 1.69 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.65 7.76 -51.93 -0.40 0.25 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.13 2.29 8.06 -52.49 -0.42 1.87 16 31 H 0.15 3.25 6.99 -52.49 -0.37 2.89 16 32 H 0.40 7.36 6.00 -40.82 -0.25 7.12 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.38 8.73 6.36 -40.82 -0.26 8.47 16 42 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.93 7.81 -51.93 -0.41 0.53 16 45 H 0.11 1.86 6.03 -51.93 -0.31 1.55 16 LS Contribution 364.83 15.07 5.50 5.50 Total: -1.00 -30.08 364.83 -8.06 -38.14 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -7.42 Total: 15.10 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.11 Total: -2.32 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.08 Total: -61.39 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.07 Total: -12.74 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.08 -8.06 -38.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133683411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.908 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds