Wall clock time and date at job start Tue Mar 31 2020 07:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35450 * 125.56395 * 2 1 4 4 C 1.39836 * 107.86600 * 180.02562 * 3 2 1 5 5 C 1.37867 * 107.08464 * 359.97438 * 4 3 2 6 6 C 1.46680 * 126.23311 * 179.97438 * 5 4 3 7 7 O 1.21696 * 119.99887 * 182.81752 * 6 5 4 8 8 N 1.34774 * 119.99759 * 2.82485 * 6 5 4 9 9 C 1.46505 * 119.99772 * 185.13159 * 8 6 5 10 10 H 1.09000 * 109.46803 * 29.89976 * 9 8 6 11 11 C 1.52999 * 109.47058 * 269.90173 * 9 8 6 12 12 C 1.52996 * 109.46855 * 149.89637 * 9 8 6 13 13 C 1.52996 * 109.47301 * 294.10425 * 12 9 8 14 14 H 1.09001 * 109.47530 * 306.21436 * 13 12 9 15 15 C 1.53005 * 109.47212 * 186.21230 * 13 12 9 16 16 N 1.46501 * 109.46947 * 66.22042 * 13 12 9 17 17 C 1.36939 * 119.99723 * 209.89903 * 16 13 12 18 18 H 1.07999 * 120.00245 * 7.63299 * 17 16 13 19 19 C 1.38812 * 119.99975 * 187.62907 * 17 16 13 20 20 N 1.31618 * 119.99905 * 6.37786 * 19 17 16 21 21 Si 1.86795 * 119.99906 * 186.36777 * 19 17 16 22 22 H 1.48508 * 109.47103 * 90.00668 * 21 19 17 23 23 H 1.48504 * 109.47361 * 210.00254 * 21 19 17 24 24 H 1.48501 * 109.47599 * 330.00426 * 21 19 17 25 25 N 1.35533 * 125.56450 * 180.31822 * 2 1 3 26 26 C 1.46501 * 125.68042 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.47350 * 89.97434 * 1 2 3 28 28 H 1.09003 * 109.46952 * 209.96915 * 1 2 3 29 29 H 1.09001 * 109.47520 * 329.97011 * 1 2 3 30 30 H 1.08001 * 126.06397 * 0.06362 * 3 2 1 31 31 H 1.07995 * 126.45414 * 180.02562 * 4 3 2 32 32 H 0.96993 * 120.00478 * 5.12728 * 8 6 5 33 33 H 1.08995 * 109.47265 * 59.99761 * 11 9 8 34 34 H 1.09001 * 109.47120 * 180.02562 * 11 9 8 35 35 H 1.09005 * 109.46756 * 299.99839 * 11 9 8 36 36 H 1.09005 * 109.46965 * 174.10671 * 12 9 8 37 37 H 1.08999 * 109.47015 * 54.11066 * 12 9 8 38 38 H 1.09001 * 109.46771 * 60.00328 * 15 13 12 39 39 H 1.08997 * 109.47477 * 179.97438 * 15 13 12 40 40 H 1.09001 * 109.47041 * 300.00505 * 15 13 12 41 41 H 0.96998 * 120.00126 * 29.88552 * 16 13 12 42 42 H 0.97000 * 120.00032 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47493 * 274.43498 * 26 25 2 44 44 H 1.09004 * 109.47073 * 34.42813 * 26 25 2 45 45 H 1.08995 * 109.47209 * 154.42768 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 -0.0006 5 6 3.6122 -0.7018 -0.0004 6 6 4.7860 -1.5814 -0.0013 7 8 4.6416 -2.7887 -0.0528 8 7 6.0244 -1.0526 0.0549 9 6 7.1980 -1.9220 -0.0593 10 1 6.9524 -2.7843 -0.6791 11 6 7.6177 -2.3977 1.3330 12 6 8.3485 -1.1439 -0.7008 13 6 7.9852 -0.7951 -2.1455 14 1 7.7020 -1.7028 -2.6783 15 6 9.1921 -0.1549 -2.8346 16 7 6.8627 0.1462 -2.1531 17 6 5.9779 0.1482 -3.1983 18 1 6.0332 -0.6213 -3.9541 19 6 5.0101 1.1393 -3.2864 20 7 5.0199 2.1460 -2.4386 21 14 3.6938 1.0445 -4.6084 22 1 2.5227 0.2940 -4.0880 23 1 3.2731 2.4173 -4.9876 24 1 4.2389 0.3467 -5.8007 25 7 2.2953 -1.1025 -0.0061 26 6 1.8242 -2.4897 -0.0133 27 1 -0.3634 0.0005 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3634 0.8897 0.5143 30 1 1.9544 2.1268 0.0010 31 1 4.5023 1.3092 -0.0004 32 1 6.1386 -0.0964 0.1710 33 1 6.7980 -2.9520 1.7900 34 1 8.4912 -3.0442 1.2481 35 1 7.8633 -1.5353 1.9529 36 1 9.2509 -1.7553 -0.6906 37 1 8.5248 -0.2267 -0.1388 38 1 10.0273 -0.8551 -2.8289 39 1 8.9334 0.0932 -3.8639 40 1 9.4753 0.7529 -2.3018 41 1 6.7459 0.7678 -1.4177 42 1 4.3434 2.8384 -2.4999 43 1 1.6325 -2.8137 1.0096 44 1 0.9045 -2.5581 -0.5944 45 1 2.5850 -3.1294 -0.4605 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133683411.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:11 Heat of formation + Delta-G solvation = -0.312494 kcal Electronic energy + Delta-G solvation = -25409.608560 eV Core-core repulsion = 22041.420321 eV Total energy + Delta-G solvation = -3368.188239 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.22087 -40.25344 -38.14301 -35.76871 -34.25392 -33.49603 -32.72592 -31.69283 -30.18075 -27.60710 -27.33716 -27.22722 -25.48191 -23.37534 -22.01229 -21.59362 -20.95140 -19.93120 -19.05794 -18.41750 -17.25929 -16.58178 -16.56555 -16.15701 -15.64170 -15.46113 -15.26510 -14.96667 -14.40290 -14.18445 -14.13848 -14.00884 -13.94484 -13.59975 -13.51597 -13.32818 -13.15452 -12.89706 -12.81052 -12.78150 -12.70831 -12.58294 -12.50824 -12.21487 -12.13254 -11.69771 -11.54669 -11.38624 -10.80034 -10.79035 -9.86435 -9.45880 -8.83986 -8.67094 -7.77430 -4.97768 0.69501 1.41679 1.46849 1.48472 1.83504 1.95230 2.58289 2.63645 2.75735 3.57062 3.80956 3.98013 4.00237 4.06040 4.16028 4.22755 4.36654 4.39043 4.42083 4.59003 4.63346 4.71467 4.73323 4.77299 4.86274 4.89422 4.90717 4.94989 5.05712 5.11008 5.16102 5.18957 5.38298 5.39061 5.45477 5.49297 5.64086 5.68466 5.79609 6.06121 6.21706 6.45824 6.49681 6.75929 7.42154 7.54575 8.26520 8.54773 9.42920 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012006 B = 0.008203 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.687904 B = 3412.654979 C = 5028.944488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.034 3.966 3 C -0.233 4.233 4 C -0.093 4.093 5 C -0.087 4.087 6 C 0.596 3.404 7 O -0.602 6.602 8 N -0.680 5.680 9 C 0.150 3.850 10 H 0.058 0.942 11 C -0.150 4.150 12 C -0.120 4.120 13 C 0.162 3.838 14 H 0.028 0.972 15 C -0.153 4.153 16 N -0.714 5.714 17 C -0.232 4.232 18 H 0.044 0.956 19 C -0.029 4.029 20 N -0.924 5.924 21 Si 0.928 3.072 22 H -0.305 1.305 23 H -0.295 1.295 24 H -0.289 1.289 25 N -0.422 5.422 26 C 0.067 3.933 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.144 0.856 31 H 0.138 0.862 32 H 0.403 0.597 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.047 0.953 41 H 0.374 0.626 42 H 0.247 0.753 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 -5.536 9.392 10.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.257 4.257 4 C -0.119 4.119 5 C -0.198 4.198 6 C 0.385 3.615 7 O -0.487 6.487 8 N -0.329 5.329 9 C 0.045 3.955 10 H 0.076 0.924 11 C -0.209 4.209 12 C -0.158 4.158 13 C 0.054 3.946 14 H 0.046 0.954 15 C -0.212 4.212 16 N -0.356 5.356 17 C -0.364 4.364 18 H 0.062 0.938 19 C -0.225 4.225 20 N -0.573 5.573 21 Si 0.762 3.238 22 H -0.234 1.234 23 H -0.221 1.221 24 H -0.215 1.215 25 N -0.097 5.097 26 C -0.074 4.074 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.161 0.839 31 H 0.156 0.844 32 H 0.239 0.761 33 H 0.057 0.943 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.044 0.956 40 H 0.066 0.934 41 H 0.208 0.792 42 H 0.057 0.943 43 H 0.105 0.895 44 H 0.117 0.883 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.389 -6.790 9.161 11.487 hybrid contribution -0.860 0.844 -1.126 1.649 sum -2.249 -5.946 8.035 10.245 Atomic orbital electron populations 1.20448 0.85087 1.04869 1.03237 1.21094 0.95323 0.85368 1.06499 1.20787 0.92828 0.98323 1.13789 1.21381 0.98263 0.91792 1.00478 1.20055 0.84773 0.93980 1.21034 1.16999 0.83340 0.86133 0.74982 1.90619 1.87033 1.15907 1.55183 1.45543 1.04153 1.11460 1.71746 1.20966 0.84547 0.92784 0.97164 0.92365 1.22104 1.01495 1.01801 0.95463 1.22158 0.97529 1.00972 0.95175 1.20478 0.87691 0.91853 0.94599 0.95383 1.22272 0.98513 1.00729 0.99728 1.42330 1.28088 1.41991 1.23176 1.19081 1.08344 1.06372 1.02638 0.93778 1.24774 1.00598 0.97133 0.99999 1.69636 1.36187 1.12162 1.39315 0.85842 0.81529 0.75891 0.80570 1.23401 1.22132 1.21496 1.43840 1.04431 1.07143 1.54335 1.22262 1.01828 0.79177 1.04143 0.90855 0.89899 0.88241 0.83864 0.84431 0.76053 0.94272 0.89427 0.91340 0.87336 0.90596 0.91363 0.95563 0.93405 0.79248 0.94314 0.89497 0.88288 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.80 9.88 71.24 0.70 -1.10 16 2 C 0.03 1.17 6.87 41.34 0.28 1.46 16 3 C -0.23 -8.88 10.71 22.01 0.24 -8.64 16 4 C -0.09 -3.91 10.01 22.57 0.23 -3.69 16 5 C -0.09 -3.69 6.89 40.35 0.28 -3.41 16 6 C 0.60 25.41 7.77 86.45 0.67 26.08 16 7 O -0.60 -27.44 14.20 -4.34 -0.06 -27.50 16 8 N -0.68 -25.20 3.64 -446.49 -1.63 -26.82 16 9 C 0.15 4.71 2.60 44.99 0.12 4.83 16 10 H 0.06 2.15 7.49 -2.39 -0.02 2.13 16 11 C -0.15 -3.74 9.52 71.98 0.69 -3.06 16 12 C -0.12 -3.34 4.43 30.59 0.14 -3.21 16 13 C 0.16 5.99 2.90 44.99 0.13 6.12 16 14 H 0.03 1.14 8.03 -2.39 -0.02 1.13 16 15 C -0.15 -5.10 9.52 71.98 0.69 -4.41 16 16 N -0.71 -32.52 3.68 -322.94 -1.19 -33.71 16 17 C -0.23 -12.48 9.92 84.03 0.83 -11.65 16 18 H 0.04 2.49 7.82 -2.91 -0.02 2.47 16 19 C -0.03 -1.61 5.50 84.86 0.47 -1.15 16 20 N -0.92 -50.55 12.29 21.65 0.27 -50.28 16 21 Si 0.93 47.22 29.56 68.60 2.03 49.25 16 22 H -0.31 -16.08 7.11 99.48 0.71 -15.38 16 23 H -0.29 -14.90 7.11 99.48 0.71 -14.20 16 24 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 25 N -0.42 -15.73 3.16 -519.72 -1.64 -17.37 16 26 C 0.07 2.01 10.24 127.77 1.31 3.32 16 27 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.51 7.76 -2.39 -0.02 1.49 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 31 H 0.14 6.11 6.99 -2.91 -0.02 6.09 16 32 H 0.40 14.94 6.00 -92.71 -0.56 14.39 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 36 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.37 17.44 6.36 -92.71 -0.59 16.85 16 42 H 0.25 13.59 8.31 -92.71 -0.77 12.82 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.10 2.38 7.81 -2.39 -0.02 2.36 16 45 H 0.08 2.88 6.03 -2.39 -0.01 2.87 16 Total: -1.00 -66.73 364.83 4.37 -62.36 By element: Atomic # 1 Polarization: 42.75 SS G_CDS: -0.17 Total: 42.59 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 6.76 Total: 1.49 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -4.19 Total: -128.18 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.06 Total: -27.50 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -66.73 4.37 -62.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133683411.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.046 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds