Wall clock time and date at job start Tue Mar 31 2020 07:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39834 * 126.46062 * 2 1 4 4 C 1.35453 * 107.86288 * 179.97438 * 3 2 1 5 5 N 1.35524 * 108.87483 * 359.76418 * 4 3 2 6 6 C 1.46509 * 125.68133 * 180.26608 * 5 4 3 7 7 C 1.37656 * 108.64311 * 0.38019 * 5 4 3 8 8 C 1.46679 * 126.22899 * 179.88860 * 7 5 4 9 9 O 1.21696 * 120.00159 * 103.44121 * 8 7 5 10 10 N 1.34781 * 120.00130 * 283.43011 * 8 7 5 11 11 C 1.46498 * 120.00008 * 174.83401 * 10 8 7 12 12 H 1.09002 * 109.46945 * 41.92408 * 11 10 8 13 13 C 1.53003 * 109.47149 * 281.92718 * 11 10 8 14 14 C 1.52998 * 109.47218 * 161.92245 * 11 10 8 15 15 C 1.52994 * 109.47103 * 293.68451 * 14 11 10 16 16 H 1.08999 * 109.47512 * 306.18597 * 15 14 11 17 17 C 1.52997 * 109.47522 * 186.18450 * 15 14 11 18 18 N 1.46502 * 109.47284 * 66.18325 * 15 14 11 19 19 C 1.36936 * 120.00371 * 206.82504 * 18 15 14 20 20 H 1.08005 * 119.99742 * 7.50323 * 19 18 15 21 21 C 1.38817 * 120.00149 * 187.51028 * 19 18 15 22 22 N 1.31618 * 119.99771 * 3.61825 * 21 19 18 23 23 Si 1.86795 * 119.99819 * 183.61476 * 21 19 18 24 24 H 1.48497 * 109.47512 * 5.17467 * 23 21 19 25 25 H 1.48504 * 109.46779 * 125.17800 * 23 21 19 26 26 H 1.48506 * 109.47323 * 245.17053 * 23 21 19 27 27 H 1.08994 * 109.47290 * 264.87312 * 1 2 3 28 28 H 1.09010 * 109.46842 * 24.87239 * 1 2 3 29 29 H 1.09003 * 109.47549 * 144.86885 * 1 2 3 30 30 H 1.07997 * 126.06670 * 359.93597 * 3 2 1 31 31 H 1.08005 * 125.56346 * 179.97438 * 4 3 2 32 32 H 1.08993 * 109.46837 * 275.06693 * 6 5 4 33 33 H 1.09000 * 109.46823 * 35.06608 * 6 5 4 34 34 H 1.09000 * 109.47313 * 155.06392 * 6 5 4 35 35 H 0.96997 * 119.99670 * 355.11631 * 10 8 7 36 36 H 1.09002 * 109.46943 * 299.99691 * 13 11 10 37 37 H 1.08995 * 109.47545 * 59.99951 * 13 11 10 38 38 H 1.09000 * 109.46683 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47114 * 53.68406 * 14 11 10 40 40 H 1.08997 * 109.46868 * 173.68373 * 14 11 10 41 41 H 1.09005 * 109.46610 * 59.99539 * 17 15 14 42 42 H 1.09002 * 109.47494 * 180.02562 * 17 15 14 43 43 H 1.08999 * 109.46847 * 300.00554 * 17 15 14 44 44 H 0.96997 * 119.99651 * 26.82629 * 18 15 14 45 45 H 0.97001 * 119.99666 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6926 0.0006 5 7 3.6283 -0.6626 0.0062 6 6 4.8225 -1.5113 0.0141 7 6 2.3262 -1.1089 0.0007 8 6 1.8898 -2.5093 0.0017 9 8 1.4697 -3.0150 1.0258 10 7 1.9538 -3.2360 -1.1317 11 6 1.6258 -4.6636 -1.1060 12 1 0.7465 -4.8231 -0.4819 13 6 2.8075 -5.4481 -0.5324 14 6 1.3358 -5.1459 -2.5287 15 6 0.0605 -4.4760 -3.0442 16 1 -0.7508 -4.6457 -2.3364 17 6 -0.3150 -5.0714 -4.4026 18 7 0.2893 -3.0362 -3.1886 19 6 -0.7613 -2.1630 -3.0936 20 1 -1.7351 -2.5206 -2.7931 21 6 -0.5746 -0.8184 -3.3837 22 7 0.5933 -0.3949 -3.8184 23 14 -1.9811 0.3899 -3.1571 24 1 -3.1395 -0.3082 -2.5440 25 1 -1.5441 1.4973 -2.2695 26 1 -2.3777 0.9412 -4.4778 27 1 -0.3633 -0.0918 1.0235 28 1 -0.3633 0.9324 -0.4323 29 1 -0.3634 -0.8405 -0.5914 30 1 2.0137 2.1548 -0.0010 31 1 4.4973 1.3250 0.0003 32 1 5.1749 -1.6520 -1.0076 33 1 5.6037 -1.0337 0.6055 34 1 4.5772 -2.4796 0.4505 35 1 2.2211 -2.8146 -1.9634 36 1 3.6868 -5.2885 -1.1565 37 1 3.0142 -5.1046 0.4812 38 1 2.5632 -6.5102 -0.5129 39 1 2.1713 -4.8850 -3.1782 40 1 1.2021 -6.2276 -2.5254 41 1 -0.4852 -6.1427 -4.2952 42 1 -1.2233 -4.5938 -4.7701 43 1 0.4963 -4.9017 -5.1105 44 1 1.1850 -2.7014 -3.3514 45 1 0.7238 0.5448 -4.0207 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134182342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:41 Heat of formation + Delta-G solvation = 21.918360 kcal Electronic energy + Delta-G solvation = -25604.426229 eV Core-core repulsion = 22237.201992 eV Total energy + Delta-G solvation = -3367.224237 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.82960 -38.86002 -36.67144 -34.15962 -33.18772 -32.21780 -30.80615 -29.50720 -28.49312 -27.53556 -26.33924 -24.77945 -23.57665 -22.49378 -20.38988 -20.15543 -19.64516 -18.61833 -17.11803 -17.00712 -16.01789 -15.22849 -14.97287 -14.66866 -14.30749 -13.81248 -13.76623 -13.51801 -13.03860 -12.82472 -12.72956 -12.66898 -12.56584 -12.30158 -12.07256 -11.91418 -11.73432 -11.65941 -11.56729 -11.41943 -10.95369 -10.81509 -10.68089 -10.63567 -10.37587 -10.15299 -9.85269 -9.62869 -9.41836 -8.85479 -8.40342 -7.98893 -7.44953 -6.87893 -5.71292 -2.98184 2.42247 2.90579 3.45080 3.46854 3.48947 3.54290 3.55107 4.00283 4.64660 4.89962 5.06592 5.23755 5.25959 5.39722 5.47014 5.47659 5.56592 5.61222 5.67938 5.86661 5.90146 5.95683 5.99122 6.02473 6.14574 6.25953 6.32338 6.36755 6.43697 6.50455 6.54581 6.62758 6.66214 6.87594 6.89350 7.05938 7.09010 7.15260 7.46095 7.61933 7.75050 7.79458 8.15954 8.46908 8.81797 9.58004 10.11509 10.47559 11.50672 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.009442 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.442344 B = 2964.713491 C = 4822.586075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.080 4.080 3 C -0.200 4.200 4 C -0.004 4.004 5 N -0.430 5.430 6 C 0.075 3.925 7 C -0.037 4.037 8 C 0.604 3.396 9 O -0.551 6.551 10 N -0.688 5.688 11 C 0.148 3.852 12 H 0.082 0.918 13 C -0.163 4.163 14 C -0.133 4.133 15 C 0.169 3.831 16 H 0.049 0.951 17 C -0.163 4.163 18 N -0.715 5.715 19 C -0.238 4.238 20 H 0.065 0.935 21 C 0.004 3.996 22 N -0.921 5.921 23 Si 0.887 3.113 24 H -0.282 1.282 25 H -0.285 1.285 26 H -0.297 1.297 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.159 0.841 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.033 0.967 42 H 0.053 0.947 43 H 0.044 0.956 44 H 0.376 0.624 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.844 -4.840 5.088 11.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 C -0.224 4.224 4 C -0.137 4.137 5 N -0.107 5.107 6 C -0.067 4.067 7 C -0.149 4.149 8 C 0.388 3.612 9 O -0.429 6.429 10 N -0.341 5.341 11 C 0.044 3.956 12 H 0.100 0.900 13 C -0.221 4.221 14 C -0.171 4.171 15 C 0.059 3.941 16 H 0.067 0.933 17 C -0.223 4.223 18 N -0.358 5.358 19 C -0.369 4.369 20 H 0.083 0.917 21 C -0.193 4.193 22 N -0.569 5.569 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.225 1.225 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.102 0.898 30 H 0.151 0.849 31 H 0.176 0.824 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.247 0.753 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.210 0.790 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.704 -5.391 5.814 11.774 hybrid contribution -0.300 1.228 -0.644 1.419 sum 8.403 -4.163 5.171 10.709 Atomic orbital electron populations 1.20318 0.90029 1.03597 1.00696 1.19630 0.95262 0.90634 1.03164 1.20606 0.91872 0.98313 1.11659 1.21610 0.98944 0.82484 1.10617 1.43618 1.04750 1.06009 1.56290 1.21983 0.86342 0.95296 1.03122 1.19971 0.83442 0.93732 1.17750 1.16976 0.77467 0.83267 0.83450 1.90751 1.47232 1.71583 1.33294 1.46156 1.67545 1.09180 1.11179 1.20850 0.97467 0.80190 0.97132 0.90036 1.22209 0.98623 1.00019 1.01256 1.22201 0.99934 1.00192 0.94812 1.20291 0.94045 0.85677 0.94068 0.93326 1.22425 1.01624 0.98069 1.00202 1.42408 1.07779 0.99154 1.86465 1.19125 0.90654 0.88914 1.38242 0.91671 1.24537 0.96375 0.96888 1.01468 1.69607 1.21993 1.14661 1.50594 0.86494 0.82165 0.82278 0.77194 1.20704 1.21173 1.22469 0.92900 0.92254 0.89834 0.84919 0.82361 0.90813 0.90080 0.90301 0.75319 0.92881 0.92477 0.91918 0.91783 0.90761 0.94756 0.92805 0.93704 0.78966 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 9.86 36.00 0.36 -1.57 16 2 C -0.08 -1.67 6.21 -104.16 -0.65 -2.32 16 3 C -0.20 -3.66 10.76 -39.98 -0.43 -4.09 16 4 C 0.00 -0.07 11.38 -16.92 -0.19 -0.26 16 5 N -0.43 -7.07 3.16 -120.23 -0.38 -7.45 16 6 C 0.07 0.88 10.98 59.85 0.66 1.54 16 7 C -0.04 -0.74 6.63 -81.98 -0.54 -1.29 16 8 C 0.60 12.28 6.49 -12.85 -0.08 12.20 16 9 O -0.55 -12.50 16.58 5.19 0.09 -12.42 16 10 N -0.69 -12.52 4.10 -55.11 -0.23 -12.74 16 11 C 0.15 2.36 2.53 -67.93 -0.17 2.19 16 12 H 0.08 1.47 7.72 -51.93 -0.40 1.07 16 13 C -0.16 -2.12 9.37 37.16 0.35 -1.77 16 14 C -0.13 -1.97 4.40 -26.74 -0.12 -2.09 16 15 C 0.17 3.14 2.88 -67.93 -0.20 2.94 16 16 H 0.05 0.96 8.06 -51.93 -0.42 0.55 16 17 C -0.16 -2.83 9.51 37.16 0.35 -2.48 16 18 N -0.71 -16.16 3.79 -53.43 -0.20 -16.36 16 19 C -0.24 -6.19 9.75 -15.06 -0.15 -6.33 16 20 H 0.07 1.74 7.83 -52.48 -0.41 1.32 16 21 C 0.00 0.11 5.06 -17.43 -0.09 0.03 16 22 N -0.92 -25.62 13.09 55.49 0.73 -24.89 16 23 Si 0.89 21.94 28.81 -169.99 -4.90 17.04 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.28 -7.01 6.61 56.52 0.37 -6.63 16 26 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 27 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.27 7.31 -51.92 -0.38 0.89 16 29 H 0.08 2.02 7.33 -51.93 -0.38 1.64 16 30 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.16 1.87 8.06 -52.48 -0.42 1.45 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.95 7.68 -51.93 -0.40 0.55 16 35 H 0.41 7.85 6.26 -40.82 -0.26 7.59 16 36 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.82 7.82 -51.93 -0.41 0.41 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.38 8.86 5.88 -40.82 -0.24 8.62 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -30.65 367.89 -7.78 -38.43 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -7.53 Total: 16.15 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -0.90 Total: -3.30 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: -0.08 Total: -61.45 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.90 Total: 17.04 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.65 -7.78 -38.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134182342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.350 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds