Wall clock time and date at job start Tue Mar 31 2020 07:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39834 * 126.46062 * 2 1 4 4 C 1.35453 * 107.86288 * 179.97438 * 3 2 1 5 5 N 1.35524 * 108.87483 * 359.76418 * 4 3 2 6 6 C 1.46509 * 125.68133 * 180.26608 * 5 4 3 7 7 C 1.37656 * 108.64311 * 0.38019 * 5 4 3 8 8 C 1.46679 * 126.22899 * 179.88860 * 7 5 4 9 9 O 1.21696 * 120.00159 * 103.44121 * 8 7 5 10 10 N 1.34781 * 120.00130 * 283.43011 * 8 7 5 11 11 C 1.46498 * 120.00008 * 174.83401 * 10 8 7 12 12 H 1.09002 * 109.46945 * 41.92408 * 11 10 8 13 13 C 1.53003 * 109.47149 * 281.92718 * 11 10 8 14 14 C 1.52998 * 109.47218 * 161.92245 * 11 10 8 15 15 C 1.52994 * 109.47103 * 293.68451 * 14 11 10 16 16 H 1.08999 * 109.47512 * 306.18597 * 15 14 11 17 17 C 1.52997 * 109.47522 * 186.18450 * 15 14 11 18 18 N 1.46502 * 109.47284 * 66.18325 * 15 14 11 19 19 C 1.36936 * 120.00371 * 206.82504 * 18 15 14 20 20 H 1.08005 * 119.99742 * 7.50323 * 19 18 15 21 21 C 1.38817 * 120.00149 * 187.51028 * 19 18 15 22 22 N 1.31618 * 119.99771 * 3.61825 * 21 19 18 23 23 Si 1.86795 * 119.99819 * 183.61476 * 21 19 18 24 24 H 1.48497 * 109.47512 * 5.17467 * 23 21 19 25 25 H 1.48504 * 109.46779 * 125.17800 * 23 21 19 26 26 H 1.48506 * 109.47323 * 245.17053 * 23 21 19 27 27 H 1.08994 * 109.47290 * 264.87312 * 1 2 3 28 28 H 1.09010 * 109.46842 * 24.87239 * 1 2 3 29 29 H 1.09003 * 109.47549 * 144.86885 * 1 2 3 30 30 H 1.07997 * 126.06670 * 359.93597 * 3 2 1 31 31 H 1.08005 * 125.56346 * 179.97438 * 4 3 2 32 32 H 1.08993 * 109.46837 * 275.06693 * 6 5 4 33 33 H 1.09000 * 109.46823 * 35.06608 * 6 5 4 34 34 H 1.09000 * 109.47313 * 155.06392 * 6 5 4 35 35 H 0.96997 * 119.99670 * 355.11631 * 10 8 7 36 36 H 1.09002 * 109.46943 * 299.99691 * 13 11 10 37 37 H 1.08995 * 109.47545 * 59.99951 * 13 11 10 38 38 H 1.09000 * 109.46683 * 179.97438 * 13 11 10 39 39 H 1.09003 * 109.47114 * 53.68406 * 14 11 10 40 40 H 1.08997 * 109.46868 * 173.68373 * 14 11 10 41 41 H 1.09005 * 109.46610 * 59.99539 * 17 15 14 42 42 H 1.09002 * 109.47494 * 180.02562 * 17 15 14 43 43 H 1.08999 * 109.46847 * 300.00554 * 17 15 14 44 44 H 0.96997 * 119.99651 * 26.82629 * 18 15 14 45 45 H 0.97001 * 119.99666 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3380 1.1246 0.0000 4 6 3.6218 0.6926 0.0006 5 7 3.6283 -0.6626 0.0062 6 6 4.8225 -1.5113 0.0141 7 6 2.3262 -1.1089 0.0007 8 6 1.8898 -2.5093 0.0017 9 8 1.4697 -3.0150 1.0258 10 7 1.9538 -3.2360 -1.1317 11 6 1.6258 -4.6636 -1.1060 12 1 0.7465 -4.8231 -0.4819 13 6 2.8075 -5.4481 -0.5324 14 6 1.3358 -5.1459 -2.5287 15 6 0.0605 -4.4760 -3.0442 16 1 -0.7508 -4.6457 -2.3364 17 6 -0.3150 -5.0714 -4.4026 18 7 0.2893 -3.0362 -3.1886 19 6 -0.7613 -2.1630 -3.0936 20 1 -1.7351 -2.5206 -2.7931 21 6 -0.5746 -0.8184 -3.3837 22 7 0.5933 -0.3949 -3.8184 23 14 -1.9811 0.3899 -3.1571 24 1 -3.1395 -0.3082 -2.5440 25 1 -1.5441 1.4973 -2.2695 26 1 -2.3777 0.9412 -4.4778 27 1 -0.3633 -0.0918 1.0235 28 1 -0.3633 0.9324 -0.4323 29 1 -0.3634 -0.8405 -0.5914 30 1 2.0137 2.1548 -0.0010 31 1 4.4973 1.3250 0.0003 32 1 5.1749 -1.6520 -1.0076 33 1 5.6037 -1.0337 0.6055 34 1 4.5772 -2.4796 0.4505 35 1 2.2211 -2.8146 -1.9634 36 1 3.6868 -5.2885 -1.1565 37 1 3.0142 -5.1046 0.4812 38 1 2.5632 -6.5102 -0.5129 39 1 2.1713 -4.8850 -3.1782 40 1 1.2021 -6.2276 -2.5254 41 1 -0.4852 -6.1427 -4.2952 42 1 -1.2233 -4.5938 -4.7701 43 1 0.4963 -4.9017 -5.1105 44 1 1.1850 -2.7014 -3.3514 45 1 0.7238 0.5448 -4.0207 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134182342.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:40 Heat of formation + Delta-G solvation = 3.478313 kcal Electronic energy + Delta-G solvation = -25605.225849 eV Core-core repulsion = 22237.201992 eV Total energy + Delta-G solvation = -3368.023857 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.19250 -40.32749 -38.23104 -35.79794 -34.51657 -34.00056 -32.30768 -30.93857 -30.19669 -28.87594 -27.60308 -26.08951 -25.51946 -23.90511 -21.74124 -21.67475 -21.01345 -20.09128 -19.07079 -18.35440 -17.48032 -16.66517 -16.55222 -15.99261 -15.87772 -15.49847 -15.37936 -14.97517 -14.43034 -14.31821 -14.16862 -14.07270 -13.91890 -13.63689 -13.54574 -13.33158 -13.21961 -12.97135 -12.84007 -12.78096 -12.59898 -12.50481 -12.40098 -12.27851 -12.08439 -11.74921 -11.56947 -11.39881 -11.01116 -10.80206 -9.91120 -9.32943 -8.88020 -8.79447 -7.81246 -5.03413 1.03467 1.43507 1.48842 1.50355 1.52518 2.03376 2.11657 2.60873 2.65414 3.55255 3.75492 3.93024 3.94899 4.09923 4.16199 4.28054 4.36606 4.40246 4.43528 4.52463 4.56718 4.62159 4.69002 4.79527 4.83184 4.87297 4.88268 4.90466 5.07485 5.13208 5.14508 5.18984 5.24619 5.34648 5.42695 5.54453 5.62458 5.65289 5.72929 6.02255 6.17684 6.41211 6.52461 6.63754 7.28631 7.50381 8.22163 8.48331 9.40246 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010642 B = 0.009442 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.442344 B = 2964.713491 C = 4822.586075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.117 4.117 3 C -0.229 4.229 4 C 0.020 3.980 5 N -0.425 5.425 6 C 0.066 3.934 7 C -0.064 4.064 8 C 0.603 3.397 9 O -0.586 6.586 10 N -0.679 5.679 11 C 0.143 3.857 12 H 0.055 0.945 13 C -0.151 4.151 14 C -0.118 4.118 15 C 0.161 3.839 16 H 0.031 0.969 17 C -0.153 4.153 18 N -0.718 5.718 19 C -0.231 4.231 20 H 0.052 0.948 21 C -0.030 4.030 22 N -0.938 5.938 23 Si 0.921 3.079 24 H -0.282 1.282 25 H -0.286 1.286 26 H -0.302 1.302 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.143 0.857 31 H 0.208 0.792 32 H 0.089 0.911 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.404 0.596 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.027 0.973 43 H 0.045 0.955 44 H 0.371 0.629 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.305 -6.027 4.855 13.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 C -0.253 4.253 4 C -0.114 4.114 5 N -0.101 5.101 6 C -0.074 4.074 7 C -0.177 4.177 8 C 0.388 3.612 9 O -0.466 6.466 10 N -0.330 5.330 11 C 0.039 3.961 12 H 0.073 0.927 13 C -0.209 4.209 14 C -0.156 4.156 15 C 0.052 3.948 16 H 0.049 0.951 17 C -0.213 4.213 18 N -0.361 5.361 19 C -0.363 4.363 20 H 0.070 0.930 21 C -0.225 4.225 22 N -0.587 5.587 23 Si 0.753 3.247 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.231 1.231 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.161 0.839 31 H 0.224 0.776 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.091 0.909 35 H 0.242 0.758 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.107 0.893 39 H 0.093 0.907 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.064 0.936 44 H 0.205 0.795 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.168 -6.640 5.567 14.135 hybrid contribution -1.075 1.526 -0.555 1.948 sum 10.093 -5.113 5.012 12.375 Atomic orbital electron populations 1.20119 0.91551 1.01548 1.00286 1.19813 0.94929 0.92497 1.05294 1.20852 0.92844 0.98251 1.13341 1.22300 0.99532 0.82514 1.07036 1.43936 1.04679 1.06796 1.54640 1.22336 0.85293 0.94877 1.04860 1.19953 0.85270 0.93228 1.19223 1.17117 0.77063 0.83604 0.83421 1.90715 1.49034 1.72418 1.34470 1.46194 1.66528 1.10092 1.10219 1.21044 0.97984 0.79373 0.97716 0.92715 1.22100 0.97721 1.00840 1.00227 1.22113 0.97954 1.01854 0.93709 1.20519 0.95734 0.83824 0.94675 0.95077 1.22269 1.00311 0.99924 0.98769 1.42458 1.06629 1.00679 1.86355 1.19192 0.90952 0.89586 1.36572 0.92994 1.24834 0.97485 0.97768 1.02380 1.69681 1.22831 1.14118 1.52103 0.85942 0.80917 0.81235 0.76592 1.20691 1.21260 1.23070 0.92269 0.92966 0.93192 0.83942 0.77568 0.89258 0.86352 0.90877 0.75807 0.91059 0.94186 0.89274 0.90660 0.87023 0.91197 0.95404 0.93562 0.79469 0.94486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.52 9.86 71.23 0.70 -2.82 16 2 C -0.12 -5.05 6.21 -19.57 -0.12 -5.17 16 3 C -0.23 -8.26 10.76 22.01 0.24 -8.03 16 4 C 0.02 0.57 11.38 83.48 0.95 1.52 16 5 N -0.42 -13.19 3.16 -534.30 -1.69 -14.88 16 6 C 0.07 1.37 10.98 127.77 1.40 2.77 16 7 C -0.06 -2.57 6.63 40.35 0.27 -2.31 16 8 C 0.60 24.98 6.49 86.45 0.56 25.54 16 9 O -0.59 -27.43 16.58 -4.34 -0.07 -27.50 16 10 N -0.68 -24.69 4.10 -446.49 -1.83 -26.52 16 11 C 0.14 4.39 2.53 44.99 0.11 4.51 16 12 H 0.05 1.99 7.72 -2.39 -0.02 1.97 16 13 C -0.15 -3.55 9.37 71.98 0.67 -2.87 16 14 C -0.12 -3.20 4.40 30.59 0.13 -3.07 16 15 C 0.16 5.83 2.88 44.99 0.13 5.96 16 16 H 0.03 1.24 8.06 -2.39 -0.02 1.22 16 17 C -0.15 -5.02 9.51 71.98 0.68 -4.34 16 18 N -0.72 -32.70 3.79 -322.94 -1.23 -33.92 16 19 C -0.23 -12.28 9.75 84.03 0.82 -11.46 16 20 H 0.05 2.86 7.83 -2.91 -0.02 2.84 16 21 C -0.03 -1.63 5.06 84.86 0.43 -1.20 16 22 N -0.94 -53.00 13.09 21.65 0.28 -52.71 16 23 Si 0.92 46.15 28.81 68.60 1.98 48.12 16 24 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 25 H -0.29 -14.24 6.61 99.48 0.66 -13.58 16 26 H -0.30 -15.33 7.11 99.48 0.71 -14.62 16 27 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.05 2.34 7.31 -2.38 -0.02 2.32 16 29 H 0.05 2.55 7.33 -2.39 -0.02 2.53 16 30 H 0.14 4.66 8.06 -2.91 -0.02 4.63 16 31 H 0.21 3.87 8.06 -2.91 -0.02 3.84 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.12 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.61 7.68 -2.39 -0.02 1.60 16 35 H 0.40 15.46 6.26 -92.71 -0.58 14.88 16 36 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.04 1.09 7.82 -2.39 -0.02 1.07 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.37 17.54 5.88 -92.71 -0.54 17.00 16 45 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -69.88 367.89 4.23 -65.65 By element: Atomic # 1 Polarization: 42.95 SS G_CDS: -0.20 Total: 42.75 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 6.99 Total: -0.97 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -4.46 Total: -128.04 kcal Atomic # 8 Polarization: -27.43 SS G_CDS: -0.07 Total: -27.50 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.98 Total: 48.12 kcal Total: -69.88 4.23 -65.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134182342.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.126 kcal (2) G-P(sol) polarization free energy of solvation -69.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds