Wall clock time and date at job start Tue Mar 31 2020 07:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39834 * 126.45658 * 2 1 4 4 C 1.35456 * 107.86385 * 179.97438 * 3 2 1 5 5 N 1.35531 * 108.87019 * 359.77230 * 4 3 2 6 6 C 1.46503 * 125.67766 * 180.26371 * 5 4 3 7 7 C 1.37648 * 108.64814 * 0.37485 * 5 4 3 8 8 C 1.46677 * 126.23549 * 179.88991 * 7 5 4 9 9 O 1.21694 * 120.00092 * 99.30026 * 8 7 5 10 10 N 1.34771 * 120.00087 * 279.29928 * 8 7 5 11 11 C 1.46506 * 120.00123 * 174.86786 * 10 8 7 12 12 H 1.08998 * 109.47126 * 34.99774 * 11 10 8 13 13 C 1.53002 * 109.46697 * 274.99922 * 11 10 8 14 14 C 1.53002 * 109.46935 * 155.00088 * 11 10 8 15 15 C 1.52999 * 109.47031 * 294.99586 * 14 11 10 16 16 H 1.08999 * 109.47087 * 55.00370 * 15 14 11 17 17 C 1.53005 * 109.46884 * 175.00591 * 15 14 11 18 18 N 1.46501 * 109.47079 * 295.00144 * 15 14 11 19 19 C 1.36938 * 119.99850 * 154.99896 * 18 15 14 20 20 H 1.08001 * 119.99772 * 0.02562 * 19 18 15 21 21 C 1.38807 * 120.00343 * 180.02562 * 19 18 15 22 22 N 1.31620 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00440 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47268 * 89.99856 * 23 21 19 25 25 H 1.48507 * 109.47448 * 210.00116 * 23 21 19 26 26 H 1.48502 * 109.47088 * 329.99877 * 23 21 19 27 27 H 1.09000 * 109.46987 * 270.03468 * 1 2 3 28 28 H 1.08996 * 109.47676 * 30.03509 * 1 2 3 29 29 H 1.08999 * 109.47594 * 150.03673 * 1 2 3 30 30 H 1.07996 * 126.07241 * 359.95393 * 3 2 1 31 31 H 1.07996 * 125.56475 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47070 * 275.06105 * 6 5 4 33 33 H 1.08997 * 109.46963 * 35.06274 * 6 5 4 34 34 H 1.08999 * 109.47448 * 155.06326 * 6 5 4 35 35 H 0.97003 * 120.00344 * 354.86453 * 10 8 7 36 36 H 1.09007 * 109.47033 * 299.99584 * 13 11 10 37 37 H 1.08998 * 109.47326 * 59.99667 * 13 11 10 38 38 H 1.08996 * 109.46684 * 180.02562 * 13 11 10 39 39 H 1.08999 * 109.46594 * 175.00228 * 14 11 10 40 40 H 1.08994 * 109.47288 * 55.00150 * 14 11 10 41 41 H 1.09001 * 109.46900 * 180.02562 * 17 15 14 42 42 H 1.08995 * 109.46855 * 299.99503 * 17 15 14 43 43 H 1.08999 * 109.46988 * 60.00280 * 17 15 14 44 44 H 0.96999 * 120.00326 * 335.00502 * 18 15 14 45 45 H 0.96997 * 120.00714 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 0.0006 5 7 3.6283 -0.6625 0.0060 6 6 4.8225 -1.5111 0.0139 7 6 2.3263 -1.1089 0.0005 8 6 1.8899 -2.5093 0.0014 9 8 1.5410 -3.0373 1.0408 10 7 1.8752 -3.2113 -1.1490 11 6 1.5479 -4.6392 -1.1317 12 1 0.7983 -4.8308 -0.3639 13 6 2.8100 -5.4480 -0.8254 14 6 0.9962 -5.0525 -2.4976 15 6 -0.3319 -4.3359 -2.7493 16 1 -0.1898 -3.2602 -2.6455 17 6 -0.8216 -4.6514 -4.1642 18 7 -1.3260 -4.7934 -1.7753 19 6 -2.3840 -3.9884 -1.4471 20 1 -2.4859 -3.0164 -1.9068 21 6 -3.3256 -4.4216 -0.5238 22 7 -3.2012 -5.6060 0.0367 23 14 -4.7693 -3.3239 -0.0767 24 1 -5.9047 -3.6016 -0.9927 25 1 -5.1842 -3.5970 1.3228 26 1 -4.3669 -1.9001 -0.2047 27 1 -0.3633 0.0006 1.0277 28 1 -0.3634 0.8896 -0.5143 29 1 -0.3634 -0.8903 -0.5132 30 1 2.0137 2.1548 -0.0007 31 1 4.4972 1.3252 0.0003 32 1 5.1749 -1.6518 -1.0079 33 1 5.6037 -1.0335 0.6052 34 1 4.5773 -2.4794 0.4501 35 1 2.0813 -2.7711 -1.9885 36 1 3.5596 -5.2563 -1.5933 37 1 3.2031 -5.1535 0.1476 38 1 2.5666 -6.5103 -0.8130 39 1 0.8360 -6.1305 -2.5136 40 1 1.7095 -4.7796 -3.2753 41 1 -1.7675 -4.1405 -4.3436 42 1 -0.0820 -4.3109 -4.8889 43 1 -0.9638 -5.7271 -4.2679 44 1 -1.2346 -5.6665 -1.3627 45 1 -3.8589 -5.9086 0.6822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134182344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:44 Heat of formation + Delta-G solvation = 12.691593 kcal Electronic energy + Delta-G solvation = -24649.845037 eV Core-core repulsion = 21282.220698 eV Total energy + Delta-G solvation = -3367.624339 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.28598 -39.06057 -36.70910 -34.40533 -33.64550 -32.12582 -30.99609 -29.82431 -28.55940 -27.95338 -26.32466 -25.18137 -23.58374 -22.74028 -20.72297 -20.15768 -19.67224 -19.16049 -17.48544 -17.06672 -16.14530 -15.53096 -15.21514 -14.76440 -14.47693 -13.97315 -13.92085 -13.66107 -13.29405 -13.10768 -13.02395 -12.86161 -12.70038 -12.63623 -12.15498 -12.01650 -11.91371 -11.85405 -11.71658 -11.57887 -11.27345 -11.00967 -10.78197 -10.56706 -10.41701 -10.17806 -9.84934 -9.69993 -9.55359 -8.81543 -8.70442 -8.48344 -7.96520 -6.85721 -5.66464 -2.94207 1.98756 2.47928 2.94823 3.15756 3.50687 3.56177 3.57813 3.62302 4.59958 4.68587 4.87506 4.93585 5.04244 5.16537 5.20264 5.40512 5.42500 5.49859 5.51738 5.65827 5.67773 5.88465 5.89549 5.91779 6.03708 6.11544 6.15156 6.15723 6.29444 6.33514 6.36349 6.46682 6.55412 6.59603 6.73499 6.83353 6.94888 6.97684 7.11504 7.13131 7.28384 7.79187 7.79766 8.51353 8.52508 9.63308 10.20240 10.54518 11.56413 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.005551 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.322910 B = 5043.292598 C = 6158.259356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.107 4.107 3 C -0.201 4.201 4 C -0.003 4.003 5 N -0.427 5.427 6 C 0.071 3.929 7 C -0.040 4.040 8 C 0.592 3.408 9 O -0.517 6.517 10 N -0.706 5.706 11 C 0.140 3.860 12 H 0.108 0.892 13 C -0.160 4.160 14 C -0.130 4.130 15 C 0.171 3.829 16 H 0.046 0.954 17 C -0.165 4.165 18 N -0.720 5.720 19 C -0.232 4.232 20 H 0.067 0.933 21 C -0.011 4.011 22 N -0.932 5.932 23 Si 0.901 3.099 24 H -0.292 1.292 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.164 0.836 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.395 0.605 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.033 0.967 43 H 0.045 0.955 44 H 0.382 0.618 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.257 8.494 -4.674 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.114 4.114 3 C -0.226 4.226 4 C -0.135 4.135 5 N -0.103 5.103 6 C -0.070 4.070 7 C -0.153 4.153 8 C 0.375 3.625 9 O -0.391 6.391 10 N -0.358 5.358 11 C 0.037 3.963 12 H 0.126 0.874 13 C -0.219 4.219 14 C -0.169 4.169 15 C 0.061 3.939 16 H 0.064 0.936 17 C -0.225 4.225 18 N -0.361 5.361 19 C -0.364 4.364 20 H 0.085 0.915 21 C -0.207 4.207 22 N -0.581 5.581 23 Si 0.732 3.268 24 H -0.219 1.219 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.157 0.843 31 H 0.181 0.819 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.229 0.771 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.216 0.784 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 18.200 7.956 -3.858 20.234 hybrid contribution -0.645 0.551 -0.036 0.849 sum 17.555 8.507 -3.894 19.893 Atomic orbital electron populations 1.20245 0.89311 1.02667 1.02362 1.19866 0.95582 0.90858 1.05136 1.20674 0.91729 0.98438 1.11746 1.21772 0.99219 0.82471 1.10056 1.43762 1.04933 1.06174 1.55478 1.22069 0.86080 0.95605 1.03294 1.20223 0.83675 0.93954 1.17480 1.17018 0.77948 0.83335 0.84192 1.90876 1.46316 1.69818 1.32082 1.46017 1.70350 1.10558 1.08827 1.21095 0.96762 0.78437 1.00042 0.87375 1.22188 0.97967 1.00571 1.01125 1.22158 0.97987 1.01691 0.95025 1.20221 0.87752 0.96689 0.89227 0.93561 1.22455 1.00535 1.01066 0.98455 1.42386 1.25971 1.19836 1.47937 1.19145 1.00426 0.98051 1.18730 0.91495 1.24673 0.99268 0.96961 0.99807 1.69641 1.37133 1.18862 1.32425 0.86276 0.82995 0.80011 0.77481 1.21947 1.21849 1.20729 0.91478 0.91770 0.91180 0.84348 0.81906 0.90618 0.89693 0.89827 0.77086 0.93154 0.92836 0.91490 0.90584 0.92133 0.92887 0.94793 0.93565 0.78384 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 10.20 36.00 0.37 -1.07 16 2 C -0.11 -1.68 6.21 -104.16 -0.65 -2.33 16 3 C -0.20 -2.58 10.76 -39.98 -0.43 -3.01 16 4 C 0.00 -0.03 11.38 -16.91 -0.19 -0.22 16 5 N -0.43 -5.22 3.16 -120.24 -0.38 -5.60 16 6 C 0.07 0.60 10.98 59.85 0.66 1.26 16 7 C -0.04 -0.64 6.63 -81.98 -0.54 -1.18 16 8 C 0.59 10.59 6.54 -12.86 -0.08 10.50 16 9 O -0.52 -11.68 16.74 5.19 0.09 -11.59 16 10 N -0.71 -10.79 4.44 -55.11 -0.24 -11.04 16 11 C 0.14 2.28 2.56 -67.92 -0.17 2.10 16 12 H 0.11 2.32 6.99 -51.93 -0.36 1.96 16 13 C -0.16 -2.12 9.48 37.16 0.35 -1.77 16 14 C -0.13 -1.98 4.29 -26.73 -0.11 -2.09 16 15 C 0.17 3.26 2.84 -67.93 -0.19 3.07 16 16 H 0.05 0.92 7.56 -51.93 -0.39 0.52 16 17 C -0.16 -2.90 9.49 37.16 0.35 -2.55 16 18 N -0.72 -17.71 4.49 -53.42 -0.24 -17.95 16 19 C -0.23 -6.47 9.93 -15.06 -0.15 -6.62 16 20 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 22 N -0.93 -28.71 13.06 55.49 0.72 -27.98 16 23 Si 0.90 23.13 29.55 -169.99 -5.02 18.10 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.07 1.30 7.96 -51.93 -0.41 0.89 16 30 H 0.14 1.48 8.06 -52.49 -0.42 1.05 16 31 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.81 7.68 -51.93 -0.40 0.41 16 35 H 0.40 5.11 8.59 -40.82 -0.35 4.76 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 45 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -34.43 376.08 -8.00 -42.43 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -7.70 Total: 12.30 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -0.89 Total: -4.34 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.14 Total: -62.57 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.43 -8.00 -42.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134182344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.124 kcal (2) G-P(sol) polarization free energy of solvation -34.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds