Wall clock time and date at job start Tue Mar 31 2020 07:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39834 * 126.45658 * 2 1 4 4 C 1.35456 * 107.86385 * 179.97438 * 3 2 1 5 5 N 1.35531 * 108.87019 * 359.77230 * 4 3 2 6 6 C 1.46503 * 125.67766 * 180.26371 * 5 4 3 7 7 C 1.37648 * 108.64814 * 0.37485 * 5 4 3 8 8 C 1.46677 * 126.23549 * 179.88991 * 7 5 4 9 9 O 1.21694 * 120.00092 * 99.30026 * 8 7 5 10 10 N 1.34771 * 120.00087 * 279.29928 * 8 7 5 11 11 C 1.46506 * 120.00123 * 174.86786 * 10 8 7 12 12 H 1.08998 * 109.47126 * 34.99774 * 11 10 8 13 13 C 1.53002 * 109.46697 * 274.99922 * 11 10 8 14 14 C 1.53002 * 109.46935 * 155.00088 * 11 10 8 15 15 C 1.52999 * 109.47031 * 294.99586 * 14 11 10 16 16 H 1.08999 * 109.47087 * 55.00370 * 15 14 11 17 17 C 1.53005 * 109.46884 * 175.00591 * 15 14 11 18 18 N 1.46501 * 109.47079 * 295.00144 * 15 14 11 19 19 C 1.36938 * 119.99850 * 154.99896 * 18 15 14 20 20 H 1.08001 * 119.99772 * 0.02562 * 19 18 15 21 21 C 1.38807 * 120.00343 * 180.02562 * 19 18 15 22 22 N 1.31620 * 120.00041 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00440 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47268 * 89.99856 * 23 21 19 25 25 H 1.48507 * 109.47448 * 210.00116 * 23 21 19 26 26 H 1.48502 * 109.47088 * 329.99877 * 23 21 19 27 27 H 1.09000 * 109.46987 * 270.03468 * 1 2 3 28 28 H 1.08996 * 109.47676 * 30.03509 * 1 2 3 29 29 H 1.08999 * 109.47594 * 150.03673 * 1 2 3 30 30 H 1.07996 * 126.07241 * 359.95393 * 3 2 1 31 31 H 1.07996 * 125.56475 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.47070 * 275.06105 * 6 5 4 33 33 H 1.08997 * 109.46963 * 35.06274 * 6 5 4 34 34 H 1.08999 * 109.47448 * 155.06326 * 6 5 4 35 35 H 0.97003 * 120.00344 * 354.86453 * 10 8 7 36 36 H 1.09007 * 109.47033 * 299.99584 * 13 11 10 37 37 H 1.08998 * 109.47326 * 59.99667 * 13 11 10 38 38 H 1.08996 * 109.46684 * 180.02562 * 13 11 10 39 39 H 1.08999 * 109.46594 * 175.00228 * 14 11 10 40 40 H 1.08994 * 109.47288 * 55.00150 * 14 11 10 41 41 H 1.09001 * 109.46900 * 180.02562 * 17 15 14 42 42 H 1.08995 * 109.46855 * 299.99503 * 17 15 14 43 43 H 1.08999 * 109.46988 * 60.00280 * 17 15 14 44 44 H 0.96999 * 120.00326 * 335.00502 * 18 15 14 45 45 H 0.96997 * 120.00714 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6217 0.6928 0.0006 5 7 3.6283 -0.6625 0.0060 6 6 4.8225 -1.5111 0.0139 7 6 2.3263 -1.1089 0.0005 8 6 1.8899 -2.5093 0.0014 9 8 1.5410 -3.0373 1.0408 10 7 1.8752 -3.2113 -1.1490 11 6 1.5479 -4.6392 -1.1317 12 1 0.7983 -4.8308 -0.3639 13 6 2.8100 -5.4480 -0.8254 14 6 0.9962 -5.0525 -2.4976 15 6 -0.3319 -4.3359 -2.7493 16 1 -0.1898 -3.2602 -2.6455 17 6 -0.8216 -4.6514 -4.1642 18 7 -1.3260 -4.7934 -1.7753 19 6 -2.3840 -3.9884 -1.4471 20 1 -2.4859 -3.0164 -1.9068 21 6 -3.3256 -4.4216 -0.5238 22 7 -3.2012 -5.6060 0.0367 23 14 -4.7693 -3.3239 -0.0767 24 1 -5.9047 -3.6016 -0.9927 25 1 -5.1842 -3.5970 1.3228 26 1 -4.3669 -1.9001 -0.2047 27 1 -0.3633 0.0006 1.0277 28 1 -0.3634 0.8896 -0.5143 29 1 -0.3634 -0.8903 -0.5132 30 1 2.0137 2.1548 -0.0007 31 1 4.4972 1.3252 0.0003 32 1 5.1749 -1.6518 -1.0079 33 1 5.6037 -1.0335 0.6052 34 1 4.5773 -2.4794 0.4501 35 1 2.0813 -2.7711 -1.9885 36 1 3.5596 -5.2563 -1.5933 37 1 3.2031 -5.1535 0.1476 38 1 2.5666 -6.5103 -0.8130 39 1 0.8360 -6.1305 -2.5136 40 1 1.7095 -4.7796 -3.2753 41 1 -1.7675 -4.1405 -4.3436 42 1 -0.0820 -4.3109 -4.8889 43 1 -0.9638 -5.7271 -4.2679 44 1 -1.2346 -5.6665 -1.3627 45 1 -3.8589 -5.9086 0.6822 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134182344.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:44 Heat of formation + Delta-G solvation = -10.535154 kcal Electronic energy + Delta-G solvation = -24650.852225 eV Core-core repulsion = 21282.220698 eV Total energy + Delta-G solvation = -3368.631527 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.32297 -40.40883 -38.26879 -36.07679 -34.62252 -34.02782 -32.37431 -30.93055 -30.41441 -28.99165 -27.62023 -26.14900 -25.66124 -23.98165 -22.08405 -21.22083 -21.14039 -20.40030 -19.24341 -18.45487 -17.49896 -16.79752 -16.48243 -16.09812 -15.93757 -15.63325 -15.45350 -15.06720 -14.55180 -14.41222 -14.22379 -14.13266 -13.96458 -13.66498 -13.61654 -13.39062 -13.21028 -12.97449 -12.86974 -12.82340 -12.78963 -12.68637 -12.47391 -12.26745 -12.20528 -11.84907 -11.57010 -11.44293 -11.14883 -10.90569 -10.07557 -9.44316 -9.03700 -8.94150 -7.91394 -5.16396 0.93090 1.32774 1.41953 1.44732 1.51716 1.93484 1.99062 2.47062 2.56805 3.43320 3.72637 3.86411 3.89252 4.00964 4.11912 4.23451 4.34838 4.38114 4.39440 4.41377 4.51790 4.62093 4.67017 4.75026 4.76900 4.81321 4.84515 4.91651 5.01746 5.08657 5.09018 5.14306 5.19533 5.31945 5.39766 5.46260 5.51036 5.59621 5.63440 5.91840 6.05925 6.31886 6.42858 6.52256 7.20809 7.37876 8.17425 8.37447 9.32483 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013463 B = 0.005551 C = 0.004546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.322910 B = 5043.292598 C = 6158.259356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.132 4.132 3 C -0.217 4.217 4 C 0.024 3.976 5 N -0.423 5.423 6 C 0.064 3.936 7 C -0.073 4.073 8 C 0.593 3.407 9 O -0.580 6.580 10 N -0.690 5.690 11 C 0.142 3.858 12 H 0.047 0.953 13 C -0.149 4.149 14 C -0.117 4.117 15 C 0.163 3.837 16 H 0.038 0.962 17 C -0.155 4.155 18 N -0.730 5.730 19 C -0.223 4.223 20 H 0.068 0.932 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.957 3.043 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.273 1.273 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.034 0.966 30 H 0.159 0.841 31 H 0.212 0.788 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.410 0.590 36 H 0.086 0.914 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.028 0.972 42 H 0.076 0.924 43 H 0.044 0.956 44 H 0.370 0.630 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.414 10.365 -6.865 24.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.140 4.140 3 C -0.241 4.241 4 C -0.110 4.110 5 N -0.098 5.098 6 C -0.076 4.076 7 C -0.187 4.187 8 C 0.378 3.622 9 O -0.458 6.458 10 N -0.341 5.341 11 C 0.038 3.962 12 H 0.065 0.935 13 C -0.207 4.207 14 C -0.155 4.155 15 C 0.055 3.945 16 H 0.056 0.944 17 C -0.215 4.215 18 N -0.371 5.371 19 C -0.355 4.355 20 H 0.086 0.914 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.787 3.213 24 H -0.211 1.211 25 H -0.227 1.227 26 H -0.198 1.198 27 H 0.070 0.930 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.176 0.824 31 H 0.229 0.771 32 H 0.120 0.880 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.246 0.754 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.048 0.952 42 H 0.094 0.906 43 H 0.063 0.937 44 H 0.202 0.798 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 21.405 9.851 -6.144 24.351 hybrid contribution -1.509 0.034 0.577 1.616 sum 19.896 9.885 -5.567 22.903 Atomic orbital electron populations 1.20154 0.90825 1.01973 1.01211 1.20025 0.95142 0.92444 1.06395 1.20948 0.92088 0.98534 1.12488 1.22513 1.00110 0.82044 1.06295 1.44027 1.04450 1.07136 1.54173 1.22378 0.85174 0.94632 1.05453 1.19913 0.85811 0.92483 1.20456 1.17399 0.76823 0.84225 0.83732 1.90836 1.49298 1.71430 1.34268 1.45906 1.69003 1.10273 1.08914 1.20954 0.96959 0.79398 0.98926 0.93475 1.22076 0.96957 1.00199 1.01468 1.22073 0.96520 1.01382 0.95528 1.20513 0.88486 0.96589 0.88928 0.94429 1.22293 1.00531 1.00776 0.97876 1.42576 1.26447 1.18966 1.49070 1.19467 1.00673 0.98026 1.17355 0.91444 1.25395 1.02211 0.98420 1.00833 1.69791 1.38057 1.20614 1.33594 0.85359 0.80389 0.78864 0.76643 1.21104 1.22732 1.19772 0.92969 0.89450 0.94700 0.82354 0.77140 0.87994 0.86578 0.91694 0.75354 0.89526 0.94374 0.90856 0.90219 0.87499 0.95235 0.90559 0.93730 0.79817 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.87 10.20 71.23 0.73 -2.14 16 2 C -0.13 -4.14 6.21 -19.56 -0.12 -4.27 16 3 C -0.22 -5.04 10.76 22.01 0.24 -4.80 16 4 C 0.02 0.43 11.38 83.48 0.95 1.38 16 5 N -0.42 -9.25 3.16 -534.31 -1.69 -10.94 16 6 C 0.06 0.87 10.98 127.77 1.40 2.27 16 7 C -0.07 -2.31 6.63 40.35 0.27 -2.04 16 8 C 0.59 22.07 6.54 86.45 0.57 22.64 16 9 O -0.58 -28.15 16.74 -4.33 -0.07 -28.23 16 10 N -0.69 -21.10 4.44 -446.49 -1.98 -23.09 16 11 C 0.14 4.63 2.56 44.99 0.12 4.74 16 12 H 0.05 2.16 6.99 -2.39 -0.02 2.14 16 13 C -0.15 -3.77 9.48 71.98 0.68 -3.08 16 14 C -0.12 -3.35 4.29 30.59 0.13 -3.22 16 15 C 0.16 6.14 2.84 44.99 0.13 6.27 16 16 H 0.04 1.48 7.56 -2.39 -0.02 1.47 16 17 C -0.16 -5.17 9.49 71.98 0.68 -4.49 16 18 N -0.73 -37.14 4.49 -322.93 -1.45 -38.59 16 19 C -0.22 -12.84 9.93 84.03 0.83 -12.01 16 20 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 21 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 22 N -0.97 -62.37 13.06 21.65 0.28 -62.09 16 23 Si 0.96 49.18 29.55 68.60 2.03 51.21 16 24 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 25 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 26 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 27 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.03 1.38 7.96 -2.39 -0.02 1.36 16 30 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 31 H 0.21 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.06 1.16 7.68 -2.39 -0.02 1.14 16 35 H 0.41 9.99 8.59 -92.71 -0.80 9.20 16 36 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.37 20.47 7.80 -92.71 -0.72 19.75 16 45 H 0.25 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -81.99 376.08 3.64 -78.35 By element: Atomic # 1 Polarization: 36.85 SS G_CDS: -0.54 Total: 36.30 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: 7.07 Total: -2.92 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -4.84 Total: -134.71 kcal Atomic # 8 Polarization: -28.15 SS G_CDS: -0.07 Total: -28.23 kcal Atomic # 14 Polarization: 49.18 SS G_CDS: 2.03 Total: 51.21 kcal Total: -81.99 3.64 -78.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134182344.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.814 kcal (2) G-P(sol) polarization free energy of solvation -81.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds