Wall clock time and date at job start Tue Mar 31 2020 07:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35453 * 125.56661 * 2 1 4 4 C 1.39830 * 107.86357 * 179.70228 * 3 2 1 5 5 C 1.50697 * 126.45835 * 180.29751 * 4 3 2 6 6 C 1.37872 * 107.08932 * 0.41743 * 4 3 2 7 7 C 1.46673 * 126.23641 * 179.84539 * 6 4 3 8 8 O 1.21697 * 120.00131 * 359.71319 * 7 6 4 9 9 N 1.34784 * 120.00030 * 179.71564 * 7 6 4 10 10 C 1.46502 * 119.99713 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47271 * 35.00090 * 10 9 7 12 12 C 1.52993 * 109.47002 * 274.99674 * 10 9 7 13 13 C 1.52998 * 109.46555 * 155.00057 * 10 9 7 14 14 C 1.52998 * 109.47384 * 294.99651 * 13 10 9 15 15 H 1.09003 * 109.47082 * 305.00221 * 14 13 10 16 16 C 1.52995 * 109.47443 * 185.00170 * 14 13 10 17 17 N 1.46498 * 109.47009 * 65.00045 * 14 13 10 18 18 C 1.36935 * 120.00239 * 204.99963 * 17 14 13 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 14 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 N 1.35534 * 125.56156 * 179.97438 * 2 1 3 27 27 H 0.96999 * 125.67835 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47171 * 270.04420 * 1 2 3 29 29 H 1.08999 * 109.46822 * 30.04289 * 1 2 3 30 30 H 1.09001 * 109.47126 * 150.04132 * 1 2 3 31 31 H 1.08001 * 126.06410 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47869 * 270.14253 * 5 4 3 33 33 H 1.09004 * 109.46997 * 30.14386 * 5 4 3 34 34 H 1.09002 * 109.47277 * 150.13907 * 5 4 3 35 35 H 0.96995 * 119.99521 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47223 * 60.00644 * 12 10 9 37 37 H 1.09004 * 109.47405 * 180.02562 * 12 10 9 38 38 H 1.09006 * 109.47749 * 300.00516 * 12 10 9 39 39 H 1.08997 * 109.46877 * 175.00041 * 13 10 9 40 40 H 1.08999 * 109.47306 * 55.00192 * 13 10 9 41 41 H 1.08996 * 109.47329 * 300.00343 * 16 14 13 42 42 H 1.09003 * 109.46933 * 60.00266 * 16 14 13 43 43 H 1.09004 * 109.47411 * 179.97438 * 16 14 13 44 44 H 0.97004 * 119.99747 * 25.00702 * 17 14 13 45 45 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 3.6270 0.6766 0.0069 5 6 4.8486 1.5590 0.0157 6 6 3.6122 -0.7020 0.0014 7 6 4.7859 -1.5816 0.0023 8 8 5.9049 -1.1032 0.0031 9 7 4.6252 -2.9198 0.0023 10 6 5.7976 -3.7983 0.0037 11 1 6.5924 -3.3426 0.5941 12 6 6.2828 -4.0037 -1.4326 13 6 5.4209 -5.1503 0.6130 14 6 5.0548 -4.9614 2.0865 15 1 5.8757 -4.4650 2.6041 16 6 4.7991 -6.3269 2.7276 17 7 3.8458 -4.1403 2.1879 18 6 3.6040 -3.4151 3.3240 19 1 4.3047 -3.4482 4.1452 20 6 2.4582 -2.6374 3.4203 21 7 1.6069 -2.5929 2.4174 22 14 2.1286 -1.6476 4.9698 23 1 0.8527 -0.9027 4.8194 24 1 2.0313 -2.5662 6.1327 25 1 3.2396 -0.6872 5.1893 26 7 2.2953 -1.1026 0.0005 27 1 1.9833 -2.0210 0.0006 28 1 -0.3633 0.0008 1.0277 29 1 -0.3633 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5132 31 1 1.9545 2.1268 -0.0004 32 1 5.1477 1.7758 -1.0098 33 1 4.6198 2.4912 0.5323 34 1 5.6620 1.0483 0.5311 35 1 3.7333 -3.3011 0.0020 36 1 6.5511 -3.0406 -1.8667 37 1 7.1548 -4.6577 -1.4316 38 1 5.4879 -4.4595 -2.0231 39 1 6.2669 -5.8330 0.5335 40 1 4.5675 -5.5653 0.0769 41 1 3.9783 -6.8233 2.2100 42 1 5.6987 -6.9378 2.6522 43 1 4.5387 -6.1924 3.7775 44 1 3.2166 -4.1104 1.4502 45 1 1.7782 -3.1065 1.6126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134757044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:40 Heat of formation + Delta-G solvation = 5.869393 kcal Electronic energy + Delta-G solvation = -25485.288256 eV Core-core repulsion = 22117.368084 eV Total energy + Delta-G solvation = -3367.920172 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.71417 -38.85001 -36.81946 -34.37555 -32.72566 -31.98868 -31.24205 -30.14193 -28.33559 -27.10443 -26.45527 -25.63460 -23.57744 -21.81917 -20.45087 -20.13599 -19.68274 -18.54917 -17.58030 -17.42995 -15.80210 -15.12968 -14.77391 -14.59029 -14.08678 -13.79358 -13.65718 -13.40601 -13.15823 -12.94997 -12.71279 -12.49840 -12.42031 -12.25881 -12.19150 -12.00072 -11.78160 -11.63425 -11.57717 -11.45399 -11.12395 -10.88876 -10.77968 -10.55129 -10.45409 -10.17303 -10.01390 -9.25748 -9.22697 -9.01383 -8.47481 -8.03919 -7.25977 -7.06383 -6.18305 -3.14912 2.22033 3.35230 3.49747 3.55470 3.68518 3.70251 3.89010 4.17482 4.62810 4.99432 5.30119 5.36175 5.44257 5.53413 5.57591 5.59642 5.66155 5.77078 5.81490 5.88193 5.90797 5.97368 6.03016 6.03211 6.12738 6.26183 6.28158 6.31769 6.33236 6.39431 6.41232 6.48884 6.57584 6.65476 6.75133 6.94189 7.01530 7.07945 7.48466 7.66312 7.76281 8.07340 8.23611 8.63315 8.86818 9.10723 9.96713 10.12666 11.26294 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.008565 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.205868 B = 3268.359503 C = 4817.554888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.073 3.927 3 C -0.226 4.226 4 C -0.089 4.089 5 C -0.081 4.081 6 C -0.048 4.048 7 C 0.601 3.399 8 O -0.550 6.550 9 N -0.704 5.704 10 C 0.152 3.848 11 H 0.085 0.915 12 C -0.162 4.162 13 C -0.135 4.135 14 C 0.174 3.826 15 H 0.050 0.950 16 C -0.162 4.162 17 N -0.726 5.726 18 C -0.313 4.313 19 H 0.061 0.939 20 C -0.038 4.038 21 N -0.935 5.935 22 Si 1.074 2.926 23 H -0.286 1.286 24 H -0.299 1.299 25 H -0.297 1.297 26 N -0.500 5.500 27 H 0.415 0.585 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.131 0.869 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.391 0.609 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.051 0.949 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.037 0.963 43 H 0.053 0.947 44 H 0.357 0.643 45 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.680 -0.442 -7.808 7.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C -0.250 4.250 4 C -0.098 4.098 5 C -0.138 4.138 6 C -0.162 4.162 7 C 0.390 3.610 8 O -0.429 6.429 9 N -0.355 5.355 10 C 0.047 3.953 11 H 0.103 0.897 12 C -0.220 4.220 13 C -0.173 4.173 14 C 0.065 3.935 15 H 0.068 0.932 16 C -0.222 4.222 17 N -0.370 5.370 18 C -0.444 4.444 19 H 0.079 0.921 20 C -0.234 4.234 21 N -0.583 5.583 22 Si 0.906 3.094 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.225 1.225 26 N -0.095 5.095 27 H 0.254 0.746 28 H 0.098 0.902 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.226 0.774 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.072 0.928 44 H 0.191 0.809 45 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.571 0.743 -6.872 7.088 hybrid contribution 0.215 -1.856 -0.573 1.955 sum 1.786 -1.114 -7.445 7.737 Atomic orbital electron populations 1.20296 0.88472 1.01898 1.03269 1.20274 0.93346 0.86250 1.04899 1.20320 0.91937 0.97305 1.15481 1.19686 0.95019 0.91136 1.03924 1.20219 0.95178 0.97347 1.01082 1.19978 0.83274 0.93776 1.19201 1.16960 0.87394 0.81400 0.75205 1.90706 1.24554 1.75371 1.52273 1.45850 1.09184 1.05498 1.75006 1.20790 0.88831 0.90104 0.95567 0.89691 1.22207 1.00787 1.01972 0.97056 1.22228 1.01443 0.95844 0.97812 1.20227 0.90554 0.90793 0.91945 0.93216 1.22396 0.99431 0.98624 1.01784 1.42432 1.22348 1.54264 1.17977 1.19997 1.07028 1.22798 0.94538 0.92063 1.25479 0.93497 1.00001 1.04418 1.71101 1.37768 1.44198 1.05245 0.83278 0.76022 0.75874 0.74229 1.21101 1.22715 1.22452 1.41854 1.04900 1.08637 1.54113 0.74574 0.90175 0.91086 0.92163 0.85101 0.92565 0.92780 0.90554 0.77373 0.92204 0.92040 0.92993 0.90596 0.92065 0.93813 0.94411 0.92802 0.80935 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.21 10.41 36.01 0.37 -0.83 16 2 C 0.07 1.32 7.13 -81.95 -0.58 0.73 16 3 C -0.23 -4.14 10.66 -39.98 -0.43 -4.57 16 4 C -0.09 -1.78 6.21 -104.16 -0.65 -2.43 16 5 C -0.08 -1.45 9.83 36.00 0.35 -1.09 16 6 C -0.05 -1.01 7.06 -81.98 -0.58 -1.59 16 7 C 0.60 12.69 7.75 -12.85 -0.10 12.59 16 8 O -0.55 -12.58 14.47 5.19 0.08 -12.51 16 9 N -0.70 -12.93 3.80 -55.12 -0.21 -13.13 16 10 C 0.15 2.48 2.57 -67.93 -0.17 2.31 16 11 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16 12 C -0.16 -2.21 9.48 37.15 0.35 -1.86 16 13 C -0.13 -2.02 4.43 -26.73 -0.12 -2.14 16 14 C 0.17 3.26 2.89 -67.93 -0.20 3.07 16 15 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 16 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 17 N -0.73 -16.16 3.84 -53.43 -0.21 -16.37 16 18 C -0.31 -8.19 9.93 -15.06 -0.15 -8.34 16 19 H 0.06 1.67 7.83 -52.48 -0.41 1.26 16 20 C -0.04 -1.00 5.50 -17.43 -0.10 -1.10 16 21 N -0.93 -24.46 12.87 55.49 0.71 -23.74 16 22 Si 1.07 25.73 29.92 -169.99 -5.09 20.64 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.30 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 26 N -0.50 -9.63 5.39 -5.69 -0.03 -9.66 16 27 H 0.41 7.81 6.45 -40.82 -0.26 7.55 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.13 2.06 8.06 -52.49 -0.42 1.64 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.51 6.49 -51.93 -0.34 1.17 16 35 H 0.39 7.05 5.63 -40.82 -0.23 6.82 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.36 7.87 4.54 -40.82 -0.19 7.68 16 45 H 0.24 5.88 5.29 -40.82 -0.22 5.67 16 LS Contribution 360.73 15.07 5.44 5.44 Total: -1.00 -29.56 360.73 -8.11 -37.67 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -7.17 Total: 19.35 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: -1.64 Total: -7.68 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: 0.27 Total: -62.91 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.51 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -5.09 Total: 20.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.56 -8.11 -37.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134757044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.538 kcal (2) G-P(sol) polarization free energy of solvation -29.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds