Wall clock time and date at job start Tue Mar 31 2020 07:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35453 * 125.56661 * 2 1 4 4 C 1.39830 * 107.86357 * 179.70228 * 3 2 1 5 5 C 1.50697 * 126.45835 * 180.29751 * 4 3 2 6 6 C 1.37872 * 107.08932 * 0.41743 * 4 3 2 7 7 C 1.46673 * 126.23641 * 179.84539 * 6 4 3 8 8 O 1.21697 * 120.00131 * 359.71319 * 7 6 4 9 9 N 1.34784 * 120.00030 * 179.71564 * 7 6 4 10 10 C 1.46502 * 119.99713 * 180.02562 * 9 7 6 11 11 H 1.08994 * 109.47271 * 35.00090 * 10 9 7 12 12 C 1.52993 * 109.47002 * 274.99674 * 10 9 7 13 13 C 1.52998 * 109.46555 * 155.00057 * 10 9 7 14 14 C 1.52998 * 109.47384 * 294.99651 * 13 10 9 15 15 H 1.09003 * 109.47082 * 305.00221 * 14 13 10 16 16 C 1.52995 * 109.47443 * 185.00170 * 14 13 10 17 17 N 1.46498 * 109.47009 * 65.00045 * 14 13 10 18 18 C 1.36935 * 120.00239 * 204.99963 * 17 14 13 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 14 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72253 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72375 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72186 * 22 20 18 26 26 N 1.35534 * 125.56156 * 179.97438 * 2 1 3 27 27 H 0.96999 * 125.67835 * 0.02562 * 26 2 1 28 28 H 1.09001 * 109.47171 * 270.04420 * 1 2 3 29 29 H 1.08999 * 109.46822 * 30.04289 * 1 2 3 30 30 H 1.09001 * 109.47126 * 150.04132 * 1 2 3 31 31 H 1.08001 * 126.06410 * 359.97438 * 3 2 1 32 32 H 1.09000 * 109.47869 * 270.14253 * 5 4 3 33 33 H 1.09004 * 109.46997 * 30.14386 * 5 4 3 34 34 H 1.09002 * 109.47277 * 150.13907 * 5 4 3 35 35 H 0.96995 * 119.99521 * 359.97438 * 9 7 6 36 36 H 1.09001 * 109.47223 * 60.00644 * 12 10 9 37 37 H 1.09004 * 109.47405 * 180.02562 * 12 10 9 38 38 H 1.09006 * 109.47749 * 300.00516 * 12 10 9 39 39 H 1.08997 * 109.46877 * 175.00041 * 13 10 9 40 40 H 1.08999 * 109.47306 * 55.00192 * 13 10 9 41 41 H 1.08996 * 109.47329 * 300.00343 * 16 14 13 42 42 H 1.09003 * 109.46933 * 60.00266 * 16 14 13 43 43 H 1.09004 * 109.47411 * 179.97438 * 16 14 13 44 44 H 0.97004 * 119.99747 * 25.00702 * 17 14 13 45 45 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2949 1.1018 0.0000 4 6 3.6270 0.6766 0.0069 5 6 4.8486 1.5590 0.0157 6 6 3.6122 -0.7020 0.0014 7 6 4.7859 -1.5816 0.0023 8 8 5.9049 -1.1032 0.0031 9 7 4.6252 -2.9198 0.0023 10 6 5.7976 -3.7983 0.0037 11 1 6.5924 -3.3426 0.5941 12 6 6.2828 -4.0037 -1.4326 13 6 5.4209 -5.1503 0.6130 14 6 5.0548 -4.9614 2.0865 15 1 5.8757 -4.4650 2.6041 16 6 4.7991 -6.3269 2.7276 17 7 3.8458 -4.1403 2.1879 18 6 3.6040 -3.4151 3.3240 19 1 4.3047 -3.4482 4.1452 20 6 2.4582 -2.6374 3.4203 21 7 1.6069 -2.5929 2.4174 22 14 2.1286 -1.6476 4.9698 23 1 0.8527 -0.9027 4.8194 24 1 2.0313 -2.5662 6.1327 25 1 3.2396 -0.6872 5.1893 26 7 2.2953 -1.1026 0.0005 27 1 1.9833 -2.0210 0.0006 28 1 -0.3633 0.0008 1.0277 29 1 -0.3633 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5132 31 1 1.9545 2.1268 -0.0004 32 1 5.1477 1.7758 -1.0098 33 1 4.6198 2.4912 0.5323 34 1 5.6620 1.0483 0.5311 35 1 3.7333 -3.3011 0.0020 36 1 6.5511 -3.0406 -1.8667 37 1 7.1548 -4.6577 -1.4316 38 1 5.4879 -4.4595 -2.0231 39 1 6.2669 -5.8330 0.5335 40 1 4.5675 -5.5653 0.0769 41 1 3.9783 -6.8233 2.2100 42 1 5.6987 -6.9378 2.6522 43 1 4.5387 -6.1924 3.7775 44 1 3.2166 -4.1104 1.4502 45 1 1.7782 -3.1065 1.6126 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134757044.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:40 Heat of formation + Delta-G solvation = -10.940859 kcal Electronic energy + Delta-G solvation = -25486.017204 eV Core-core repulsion = 22117.368084 eV Total energy + Delta-G solvation = -3368.649119 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18435 -40.34889 -38.40424 -36.01985 -34.40294 -33.45063 -32.70454 -31.55629 -30.02282 -28.47833 -27.73497 -27.07136 -25.50571 -23.23590 -21.92320 -21.63683 -21.12050 -20.04655 -19.37051 -19.04866 -17.26030 -16.80380 -16.26548 -16.14272 -15.83273 -15.49924 -15.18280 -14.91234 -14.54391 -14.38141 -14.14483 -13.83877 -13.82983 -13.58802 -13.46285 -13.42054 -13.14917 -12.92957 -12.91379 -12.82067 -12.75635 -12.57537 -12.29263 -12.22810 -11.92079 -11.82856 -11.66425 -11.14042 -10.91208 -10.84052 -10.00838 -9.49922 -8.93719 -8.72522 -8.23955 -5.14846 0.67954 1.54707 1.61966 1.76250 1.91490 2.23283 2.43678 2.62346 2.69155 3.49556 3.66853 3.81840 4.03692 4.11274 4.12901 4.25343 4.34887 4.43616 4.45066 4.57586 4.70509 4.72963 4.75236 4.79947 4.88762 4.89160 4.93279 4.95977 5.00028 5.03446 5.12741 5.16828 5.26324 5.27791 5.29438 5.50433 5.58636 5.64449 5.70150 6.04495 6.19538 6.56982 6.63854 6.76498 7.20291 7.30592 8.06408 8.20318 9.23226 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010930 B = 0.008565 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.205868 B = 3268.359503 C = 4817.554888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.068 3.932 3 C -0.233 4.233 4 C -0.107 4.107 5 C -0.076 4.076 6 C -0.082 4.082 7 C 0.591 3.409 8 O -0.580 6.580 9 N -0.696 5.696 10 C 0.147 3.853 11 H 0.056 0.944 12 C -0.150 4.150 13 C -0.120 4.120 14 C 0.167 3.833 15 H 0.024 0.976 16 C -0.151 4.151 17 N -0.729 5.729 18 C -0.321 4.321 19 H 0.041 0.959 20 C -0.076 4.076 21 N -0.939 5.939 22 Si 1.106 2.894 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.305 1.305 26 N -0.501 5.501 27 H 0.414 0.586 28 H 0.067 0.933 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.392 0.608 36 H 0.039 0.961 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.111 0.889 40 H 0.076 0.924 41 H 0.048 0.952 42 H 0.070 0.930 43 H 0.026 0.974 44 H 0.358 0.642 45 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -1.235 -8.906 9.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.052 4.052 3 C -0.257 4.257 4 C -0.116 4.116 5 C -0.133 4.133 6 C -0.195 4.195 7 C 0.381 3.619 8 O -0.462 6.462 9 N -0.346 5.346 10 C 0.043 3.957 11 H 0.074 0.926 12 C -0.209 4.209 13 C -0.158 4.158 14 C 0.058 3.942 15 H 0.042 0.958 16 C -0.211 4.211 17 N -0.373 5.373 18 C -0.453 4.453 19 H 0.059 0.941 20 C -0.270 4.270 21 N -0.587 5.587 22 Si 0.936 3.064 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.233 1.233 26 N -0.095 5.095 27 H 0.253 0.747 28 H 0.085 0.915 29 H 0.122 0.878 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.228 0.772 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.045 0.955 44 H 0.192 0.808 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 0.941 -0.103 -7.980 8.036 hybrid contribution 0.432 -1.610 -0.223 1.682 sum 1.373 -1.713 -8.203 8.492 Atomic orbital electron populations 1.20385 0.85973 1.04122 1.03005 1.20953 0.94983 0.85858 1.03443 1.20677 0.91149 0.98703 1.15133 1.20158 0.96490 0.91336 1.03619 1.20190 0.93688 0.97541 1.01870 1.20149 0.83831 0.94407 1.21151 1.17189 0.87268 0.82299 0.75174 1.90672 1.25527 1.75986 1.53978 1.45862 1.09878 1.04966 1.73927 1.20958 0.87394 0.90132 0.97239 0.92610 1.22099 1.02325 1.01666 0.94765 1.22142 1.03354 0.95578 0.94716 1.20423 0.88379 0.90771 0.94603 0.95758 1.22240 1.01169 0.97911 0.99802 1.42421 1.23513 1.54542 1.16862 1.20015 1.06552 1.23388 0.95315 0.94102 1.26183 0.93959 1.00969 1.05935 1.71098 1.37731 1.44462 1.05420 0.82822 0.75262 0.75111 0.73190 1.21352 1.21613 1.23306 1.41853 1.04573 1.08901 1.54207 0.74701 0.91455 0.87846 0.91065 0.82480 0.91177 0.90713 0.93174 0.77201 0.94195 0.89281 0.91375 0.87037 0.90554 0.93273 0.91072 0.95468 0.80825 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.12 10.41 71.24 0.74 -1.38 16 2 C 0.07 2.40 7.13 41.34 0.29 2.69 16 3 C -0.23 -8.23 10.66 22.01 0.23 -8.00 16 4 C -0.11 -4.28 6.21 -19.57 -0.12 -4.40 16 5 C -0.08 -2.71 9.83 71.24 0.70 -2.01 16 6 C -0.08 -3.47 7.06 40.35 0.28 -3.18 16 7 C 0.59 25.64 7.75 86.44 0.67 26.31 16 8 O -0.58 -27.61 14.47 -4.34 -0.06 -27.68 16 9 N -0.70 -25.74 3.80 -446.51 -1.70 -27.43 16 10 C 0.15 4.70 2.57 44.99 0.12 4.82 16 11 H 0.06 2.12 7.58 -2.39 -0.02 2.11 16 12 C -0.15 -3.83 9.48 71.98 0.68 -3.14 16 13 C -0.12 -3.31 4.43 30.59 0.14 -3.18 16 14 C 0.17 6.12 2.89 44.99 0.13 6.25 16 15 H 0.02 1.01 8.08 -2.39 -0.02 0.99 16 16 C -0.15 -4.95 9.49 71.98 0.68 -4.27 16 17 N -0.73 -32.53 3.84 -322.95 -1.24 -33.77 16 18 C -0.32 -17.07 9.93 84.03 0.83 -16.24 16 19 H 0.04 2.30 7.83 -2.91 -0.02 2.28 16 20 C -0.08 -4.05 5.50 84.86 0.47 -3.59 16 21 N -0.94 -48.93 12.87 21.65 0.28 -48.65 16 22 Si 1.11 52.47 29.92 68.60 2.05 54.52 16 23 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 24 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 25 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 26 N -0.50 -19.22 5.39 -171.93 -0.93 -20.14 16 27 H 0.41 15.57 6.45 -92.71 -0.60 14.98 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.16 4.56 8.06 -2.91 -0.02 4.54 16 32 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 34 H 0.05 2.05 6.49 -2.39 -0.02 2.03 16 35 H 0.39 14.13 5.63 -92.71 -0.52 13.61 16 36 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 39 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.36 15.69 4.54 -92.71 -0.42 15.27 16 45 H 0.24 11.89 5.29 -92.71 -0.49 11.40 16 Total: -1.00 -65.21 360.73 4.00 -61.22 By element: Atomic # 1 Polarization: 51.52 SS G_CDS: -0.26 Total: 51.26 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: 5.85 Total: -9.32 kcal Atomic # 7 Polarization: -126.42 SS G_CDS: -3.58 Total: -130.00 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -0.06 Total: -27.68 kcal Atomic # 14 Polarization: 52.47 SS G_CDS: 2.05 Total: 54.52 kcal Total: -65.21 4.00 -61.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134757044.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.275 kcal (2) G-P(sol) polarization free energy of solvation -65.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds