Wall clock time and date at job start Tue Mar 31 2020 07:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35445 * 125.56668 * 2 1 4 4 C 1.39835 * 107.86822 * 179.70215 * 3 2 1 5 5 C 1.50694 * 126.45961 * 180.30193 * 4 3 2 6 6 C 1.37870 * 107.08110 * 0.41752 * 4 3 2 7 7 C 1.46682 * 126.23378 * 179.84361 * 6 4 3 8 8 O 1.21693 * 119.99805 * 359.71773 * 7 6 4 9 9 N 1.34777 * 120.00182 * 179.71906 * 7 6 4 10 10 C 1.46498 * 119.99828 * 180.27909 * 9 7 6 11 11 H 1.08995 * 109.47013 * 324.72129 * 10 9 7 12 12 C 1.52999 * 109.47257 * 84.72116 * 10 9 7 13 13 C 1.53004 * 109.47065 * 204.72115 * 10 9 7 14 14 C 1.53003 * 109.46807 * 64.99542 * 13 10 9 15 15 H 1.08998 * 109.47461 * 305.00352 * 14 13 10 16 16 C 1.53000 * 109.46994 * 184.99940 * 14 13 10 17 17 N 1.46501 * 109.46925 * 65.00479 * 14 13 10 18 18 C 1.36940 * 120.00163 * 204.99876 * 17 14 13 19 19 H 1.07998 * 119.99655 * 359.97438 * 18 17 14 20 20 C 1.38811 * 120.00411 * 179.97438 * 18 17 14 21 21 N 1.31622 * 119.99577 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00275 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46851 * 59.99954 * 22 20 18 24 24 H 1.48496 * 109.47217 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47212 * 300.00259 * 22 20 18 26 26 N 1.35539 * 125.56052 * 179.97438 * 2 1 3 27 27 H 0.96995 * 125.67680 * 0.02562 * 26 2 1 28 28 H 1.09004 * 109.47318 * 270.04058 * 1 2 3 29 29 H 1.09003 * 109.46930 * 30.03803 * 1 2 3 30 30 H 1.08997 * 109.47454 * 150.04116 * 1 2 3 31 31 H 1.08003 * 126.06453 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.47225 * 270.13782 * 5 4 3 33 33 H 1.08999 * 109.47368 * 30.14043 * 5 4 3 34 34 H 1.09003 * 109.47523 * 150.14195 * 5 4 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 36 36 H 1.08996 * 109.47245 * 299.99926 * 12 10 9 37 37 H 1.08995 * 109.47098 * 60.00065 * 12 10 9 38 38 H 1.09003 * 109.47054 * 179.97438 * 12 10 9 39 39 H 1.08993 * 109.47108 * 184.99578 * 13 10 9 40 40 H 1.08998 * 109.47048 * 305.00090 * 13 10 9 41 41 H 1.08998 * 109.47353 * 300.00478 * 16 14 13 42 42 H 1.09005 * 109.47051 * 60.00231 * 16 14 13 43 43 H 1.08994 * 109.47045 * 180.02562 * 16 14 13 44 44 H 0.97000 * 119.99999 * 24.99425 * 17 14 13 45 45 H 0.97000 * 119.99942 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 3.6270 0.6767 0.0069 5 6 4.8485 1.5591 0.0158 6 6 3.6121 -0.7019 0.0014 7 6 4.7859 -1.5816 0.0023 8 8 5.9048 -1.1032 0.0032 9 7 4.6252 -2.9198 0.0022 10 6 5.7975 -3.7983 0.0092 11 1 6.5946 -3.3451 -0.5801 12 6 6.2772 -3.9971 1.4484 13 6 5.4233 -5.1530 -0.5954 14 6 5.0628 -4.9707 -2.0712 15 1 4.2765 -4.2215 -2.1633 16 6 4.5693 -6.3010 -2.6437 17 7 6.2470 -4.5295 -2.8122 18 6 6.1024 -3.8241 -3.9770 19 1 5.1153 -3.5934 -4.3495 20 6 7.2245 -3.4055 -4.6789 21 7 8.4275 -3.6863 -4.2245 22 14 7.0272 -2.4439 -6.2681 23 1 6.2840 -1.1871 -5.9971 24 1 8.3671 -2.1173 -6.8186 25 1 6.2735 -3.2624 -7.2515 26 7 2.2952 -1.1026 0.0005 27 1 1.9832 -2.0210 0.0006 28 1 -0.3634 0.0007 1.0277 29 1 -0.3633 0.8897 -0.5144 30 1 -0.3634 -0.8903 -0.5132 31 1 1.9545 2.1268 -0.0004 32 1 5.1476 1.7759 -1.0097 33 1 4.6197 2.4912 0.5323 34 1 5.6620 1.0484 0.5312 35 1 3.7333 -3.3011 0.0018 36 1 6.5438 -3.0321 1.8791 37 1 5.4801 -4.4503 2.0377 38 1 7.1492 -4.6512 1.4537 39 1 6.2689 -5.8353 -0.5095 40 1 4.5677 -5.5656 -0.0607 41 1 5.3556 -7.0502 -2.5515 42 1 3.6882 -6.6294 -2.0923 43 1 4.3130 -6.1713 -3.6951 44 1 7.1336 -4.7370 -2.4777 45 1 9.2116 -3.3941 -4.7151 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134757046.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:19:42 Heat of formation + Delta-G solvation = -2.493755 kcal Electronic energy + Delta-G solvation = -24261.220795 eV Core-core repulsion = 20892.937969 eV Total energy + Delta-G solvation = -3368.282825 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.35106 -39.05426 -36.75072 -34.48962 -32.69148 -32.26058 -31.67823 -30.37582 -28.58128 -27.65732 -26.40342 -26.09865 -23.58971 -22.06110 -20.69861 -20.32547 -19.69792 -19.09133 -18.20986 -17.12731 -15.80520 -15.29029 -15.20052 -14.71068 -14.22956 -13.94527 -13.89639 -13.59905 -13.31453 -13.11565 -12.97823 -12.86784 -12.80802 -12.60096 -12.21923 -12.12326 -11.98162 -11.92706 -11.73156 -11.60132 -11.37034 -11.01995 -10.78542 -10.59679 -10.41701 -10.22431 -9.89487 -9.58947 -9.53795 -8.84107 -8.74353 -8.69989 -7.90870 -6.88873 -5.69080 -2.97176 1.61102 2.73888 3.07403 3.44921 3.49010 3.54013 3.54373 3.70964 4.65984 4.72205 4.95708 5.03164 5.19287 5.26805 5.29936 5.41357 5.46858 5.49930 5.63670 5.64967 5.69959 5.82581 5.88908 5.94775 5.99315 6.01346 6.07915 6.12865 6.27484 6.29583 6.36771 6.43693 6.52512 6.56856 6.72866 6.78562 6.85102 6.94053 7.04920 7.07508 7.40415 7.75132 7.83161 8.49141 8.56730 9.60548 10.17146 10.51486 11.53552 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011811 B = 0.005105 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2370.143869 B = 5483.878705 C = 6254.792348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.044 3.956 3 C -0.209 4.209 4 C -0.075 4.075 5 C -0.090 4.090 6 C -0.049 4.049 7 C 0.589 3.411 8 O -0.518 6.518 9 N -0.718 5.718 10 C 0.145 3.855 11 H 0.108 0.892 12 C -0.161 4.161 13 C -0.131 4.131 14 C 0.172 3.828 15 H 0.043 0.957 16 C -0.165 4.165 17 N -0.719 5.719 18 C -0.236 4.236 19 H 0.065 0.935 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.902 3.098 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.288 1.288 26 N -0.538 5.538 27 H 0.412 0.588 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.139 0.861 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.385 0.615 36 H 0.057 0.943 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.033 0.967 43 H 0.052 0.948 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.434 3.039 13.032 20.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.073 4.073 3 C -0.233 4.233 4 C -0.084 4.084 5 C -0.147 4.147 6 C -0.162 4.162 7 C 0.376 3.624 8 O -0.394 6.394 9 N -0.368 5.368 10 C 0.041 3.959 11 H 0.126 0.874 12 C -0.219 4.219 13 C -0.170 4.170 14 C 0.062 3.938 15 H 0.061 0.939 16 C -0.226 4.226 17 N -0.361 5.361 18 C -0.367 4.367 19 H 0.083 0.917 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.215 1.215 26 N -0.135 5.135 27 H 0.249 0.751 28 H 0.091 0.909 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.218 0.782 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.626 3.308 12.876 19.765 hybrid contribution -0.505 -0.294 -0.957 1.121 sum -15.131 3.014 11.919 19.496 Atomic orbital electron populations 1.20378 0.87910 1.03504 1.02693 1.20431 0.93449 0.86324 1.07093 1.20529 0.91909 0.97763 1.13138 1.19921 0.95407 0.91188 1.01860 1.20336 0.94698 0.97212 1.02441 1.20356 0.82820 0.94357 1.18639 1.16961 0.87346 0.81534 0.76604 1.90830 1.24020 1.74880 1.49625 1.45859 1.09466 1.05653 1.75862 1.21041 0.88690 0.90227 0.95893 0.87419 1.22186 1.00944 1.01974 0.96802 1.22174 1.01599 0.95749 0.97433 1.20205 0.91222 0.93571 0.88805 0.93903 1.22464 0.99066 0.99838 1.01186 1.42368 1.02678 1.65379 1.25663 1.19084 0.92296 1.26616 0.98695 0.91700 1.24678 0.95280 1.01493 0.99154 1.69635 0.96707 1.51322 1.40255 0.86340 0.76528 0.80083 0.83694 1.21319 1.21664 1.21465 1.41848 1.05544 1.08219 1.57876 0.75070 0.90882 0.89919 0.91621 0.84280 0.91396 0.92374 0.90092 0.78211 0.92408 0.93308 0.91646 0.90498 0.92242 0.93472 0.94842 0.92918 0.78310 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.60 10.41 36.00 0.37 -0.22 16 2 C 0.04 0.48 7.13 -81.95 -0.58 -0.11 16 3 C -0.21 -2.62 10.65 -39.98 -0.43 -3.05 16 4 C -0.08 -1.15 6.21 -104.16 -0.65 -1.80 16 5 C -0.09 -1.33 9.83 36.00 0.35 -0.98 16 6 C -0.05 -0.76 7.06 -81.98 -0.58 -1.34 16 7 C 0.59 10.48 7.75 -12.85 -0.10 10.38 16 8 O -0.52 -11.23 14.47 5.20 0.08 -11.16 16 9 N -0.72 -10.85 4.44 -55.11 -0.24 -11.10 16 10 C 0.15 2.38 2.52 -67.93 -0.17 2.21 16 11 H 0.11 2.33 7.06 -51.93 -0.37 1.96 16 12 C -0.16 -2.24 9.48 37.16 0.35 -1.89 16 13 C -0.13 -2.00 4.29 -26.73 -0.11 -2.11 16 14 C 0.17 3.28 2.84 -67.93 -0.19 3.08 16 15 H 0.04 0.84 7.56 -51.93 -0.39 0.45 16 16 C -0.17 -2.89 9.49 37.16 0.35 -2.54 16 17 N -0.72 -17.81 4.49 -53.42 -0.24 -18.05 16 18 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 19 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -28.72 13.06 55.49 0.72 -28.00 16 22 Si 0.90 23.27 29.55 -169.99 -5.02 18.25 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 N -0.54 -6.22 5.99 -5.70 -0.03 -6.26 16 27 H 0.41 3.53 8.19 -40.82 -0.33 3.20 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.14 1.44 8.06 -52.48 -0.42 1.02 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.34 6.49 -51.93 -0.34 1.00 16 35 H 0.39 4.57 7.73 -40.82 -0.32 4.26 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 45 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 371.28 15.07 5.60 5.60 Total: -1.00 -34.38 371.28 -8.30 -42.68 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -7.53 Total: 13.57 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.62 Total: -5.53 kcal Atomic # 7 Polarization: -63.61 SS G_CDS: 0.21 Total: -63.40 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -5.02 Total: 18.25 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.38 -8.30 -42.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134757046.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.185 kcal (2) G-P(sol) polarization free energy of solvation -34.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds