Wall clock time and date at job start Tue Mar 31 2020 07:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36765 * 125.80418 * 2 1 4 4 C 1.47268 * 126.94039 * 359.97438 * 3 2 1 5 5 O 1.21625 * 119.99736 * 354.32851 * 4 3 2 6 6 N 1.34780 * 119.99906 * 174.59840 * 4 3 2 7 7 C 1.46497 * 119.99923 * 185.36759 * 6 4 3 8 8 H 1.09005 * 109.47346 * 328.92419 * 7 6 4 9 9 C 1.52998 * 109.46989 * 88.92117 * 7 6 4 10 10 C 1.52992 * 109.47201 * 208.92282 * 7 6 4 11 11 C 1.53000 * 109.47271 * 63.10559 * 10 7 6 12 12 H 1.09000 * 109.47221 * 305.59572 * 11 10 7 13 13 C 1.53005 * 109.46895 * 65.59480 * 11 10 7 14 14 N 1.46501 * 109.47289 * 185.59491 * 11 10 7 15 15 C 1.36934 * 119.99918 * 159.12793 * 14 11 10 16 16 H 1.07999 * 120.00506 * 4.97707 * 15 14 11 17 17 C 1.38812 * 120.00014 * 184.97570 * 15 14 11 18 18 N 1.31624 * 120.00024 * 184.80776 * 17 15 14 19 19 Si 1.86805 * 119.99966 * 4.81559 * 17 15 14 20 20 H 1.48499 * 109.47174 * 94.52358 * 19 17 15 21 21 H 1.48504 * 109.46741 * 214.52714 * 19 17 15 22 22 H 1.48507 * 109.46667 * 334.52321 * 19 17 15 23 23 C 1.46692 * 106.12041 * 179.73734 * 3 2 1 24 24 C 1.34485 * 106.32952 * 0.26246 * 23 3 2 25 25 N 1.34664 * 125.80180 * 180.19027 * 2 1 3 26 26 C 1.46503 * 124.85191 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47639 * 90.00251 * 1 2 3 28 28 H 1.09003 * 109.46997 * 210.00031 * 1 2 3 29 29 H 1.08997 * 109.47264 * 329.99781 * 1 2 3 30 30 H 0.96995 * 119.99894 * 5.37075 * 6 4 3 31 31 H 1.09001 * 109.47059 * 60.00437 * 9 7 6 32 32 H 1.09008 * 109.46915 * 179.97438 * 9 7 6 33 33 H 1.08992 * 109.47367 * 300.00353 * 9 7 6 34 34 H 1.09000 * 109.47296 * 183.10524 * 10 7 6 35 35 H 1.09003 * 109.47629 * 303.10507 * 10 7 6 36 36 H 1.09003 * 109.46811 * 180.02562 * 13 11 10 37 37 H 1.08995 * 109.47239 * 299.99824 * 13 11 10 38 38 H 1.09000 * 109.47364 * 60.00511 * 13 11 10 39 39 H 0.96998 * 119.99956 * 339.12081 * 14 11 10 40 40 H 0.96999 * 119.99983 * 180.02562 * 18 17 15 41 41 H 1.08001 * 126.83745 * 180.25496 * 23 3 2 42 42 H 1.08001 * 125.57442 * 179.97438 * 24 23 3 43 43 H 1.09004 * 109.46369 * 270.31203 * 26 25 2 44 44 H 1.08994 * 109.47178 * 30.30522 * 26 25 2 45 45 H 1.08995 * 109.47291 * 150.31390 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6888 2.7853 -0.1051 6 7 2.7800 3.5039 0.1094 7 6 2.3388 4.8958 0.2273 8 1 1.4016 5.0270 -0.3136 9 6 2.1285 5.2409 1.7030 10 6 3.4037 5.8204 -0.3659 11 6 3.5587 5.5275 -1.8596 12 1 3.7639 4.4665 -2.0025 13 6 2.2662 5.8996 -2.5890 14 7 4.6686 6.3166 -2.3995 15 6 5.2768 5.9346 -3.5653 16 1 4.8879 5.0995 -4.1289 17 6 6.3933 6.6209 -4.0229 18 7 6.9212 6.3155 -5.1894 19 14 7.1468 7.9776 -2.9831 20 1 8.2527 7.4180 -2.1651 21 1 7.6776 9.0439 -3.8700 22 1 6.1090 8.5493 -2.0879 23 6 3.6882 0.6151 0.0065 24 6 3.6095 -0.7274 0.0039 25 7 2.2947 -1.0922 -0.0036 26 6 1.8094 -2.4745 -0.0077 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 3.7268 3.2935 0.1104 31 1 3.0657 5.1098 2.2439 32 1 1.8007 6.2768 1.7907 33 1 1.3699 4.5823 2.1256 34 1 3.1009 6.8584 -0.2287 35 1 4.3549 5.6497 0.1383 36 1 2.3764 5.6905 -3.6531 37 1 1.4403 5.3124 -2.1874 38 1 2.0609 6.9605 -2.4462 39 1 4.9726 7.1098 -1.9311 40 1 7.7016 6.7948 -5.5090 41 1 4.5890 1.2109 0.0121 42 1 4.4497 -1.4061 0.0068 43 1 1.6841 -2.8185 1.0191 44 1 0.8517 -2.5218 -0.5260 45 1 2.5311 -3.1115 -0.5188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135412968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:15 Heat of formation + Delta-G solvation = 13.591781 kcal Electronic energy + Delta-G solvation = -23818.220804 eV Core-core repulsion = 20450.635500 eV Total energy + Delta-G solvation = -3367.585304 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.41699 -39.22766 -36.83394 -34.60509 -33.07525 -32.03666 -31.65527 -30.72532 -28.98670 -26.81211 -26.40010 -26.24197 -23.60546 -22.55806 -21.04548 -20.13165 -19.61625 -19.02124 -17.64484 -17.32851 -15.91708 -15.81453 -15.61663 -14.91413 -14.42889 -14.26884 -14.11414 -13.66693 -13.40231 -13.24638 -13.11171 -13.03147 -12.79688 -12.64621 -12.55294 -12.40466 -12.14558 -12.03318 -11.90745 -11.64677 -11.51922 -11.22397 -10.90388 -10.57014 -10.43385 -10.10350 -9.85694 -9.57966 -9.53402 -8.86047 -8.81817 -8.61219 -8.18917 -7.18307 -5.71513 -3.05966 1.77925 2.38431 2.65147 3.40142 3.43535 3.48772 3.61361 3.74321 4.45480 4.63677 4.63786 4.78992 4.81846 4.91458 5.02749 5.11121 5.25664 5.34914 5.43209 5.47883 5.56121 5.57013 5.67097 5.74588 5.84585 5.85917 5.88676 5.97422 6.05903 6.16187 6.24816 6.32270 6.37082 6.56899 6.65502 6.72116 6.84583 6.97420 6.97722 7.12430 7.16005 7.88664 8.08467 8.48393 8.60113 9.28568 10.00940 10.22098 11.47143 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.003741 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.447055 B = 7481.885363 C = 8308.129564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.100 3.900 3 C -0.233 4.233 4 C 0.594 3.406 5 O -0.557 6.557 6 N -0.715 5.715 7 C 0.143 3.857 8 H 0.095 0.905 9 C -0.160 4.160 10 C -0.136 4.136 11 C 0.178 3.822 12 H 0.054 0.946 13 C -0.165 4.165 14 N -0.752 5.752 15 C -0.237 4.237 16 H 0.088 0.912 17 C 0.002 3.998 18 N -0.936 5.936 19 Si 0.887 3.113 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.278 1.278 23 C -0.162 4.162 24 C -0.021 4.021 25 N -0.448 5.448 26 C 0.069 3.931 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.401 0.599 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.042 0.958 38 H 0.044 0.956 39 H 0.361 0.639 40 H 0.258 0.742 41 H 0.147 0.853 42 H 0.166 0.834 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.849 -15.624 15.728 24.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.016 4.016 3 C -0.243 4.243 4 C 0.383 3.617 5 O -0.437 6.437 6 N -0.366 5.366 7 C 0.038 3.962 8 H 0.113 0.887 9 C -0.219 4.219 10 C -0.175 4.175 11 C 0.069 3.931 12 H 0.072 0.928 13 C -0.225 4.225 14 N -0.396 5.396 15 C -0.367 4.367 16 H 0.106 0.894 17 C -0.194 4.194 18 N -0.584 5.584 19 Si 0.718 3.282 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.205 1.205 23 C -0.186 4.186 24 C -0.147 4.147 25 N -0.125 5.125 26 C -0.073 4.073 27 H 0.095 0.905 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.235 0.765 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.194 0.806 40 H 0.068 0.932 41 H 0.165 0.835 42 H 0.183 0.817 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.688 -15.889 15.454 25.058 hybrid contribution 1.339 0.845 0.505 1.662 sum -10.349 -15.043 15.960 24.251 Atomic orbital electron populations 1.20513 0.87231 1.03682 1.03353 1.20289 0.93670 0.85208 1.02461 1.20173 0.93211 0.92119 1.18826 1.17294 0.85256 0.84025 0.75105 1.90701 1.17137 1.84423 1.51486 1.45821 1.09830 1.06233 1.74694 1.20992 0.99291 0.80199 0.95711 0.88680 1.22178 1.01720 1.01555 0.96424 1.22203 0.98362 0.99255 0.97633 1.20162 0.87899 0.95677 0.89354 0.92848 1.22421 0.98226 1.00189 1.01663 1.42899 1.38568 1.30116 1.27980 1.19070 1.06920 1.13398 0.97318 0.89396 1.24699 0.98336 0.99337 0.96999 1.69720 1.25114 1.44353 1.19205 0.86494 0.79324 0.82443 0.79892 1.21302 1.21938 1.20471 1.22079 0.95948 0.93588 1.07028 1.21679 0.85280 0.96320 1.11390 1.43532 1.06074 1.05999 1.56907 1.22063 1.01710 0.80251 1.03280 0.90498 0.92260 0.88262 0.76468 0.92648 0.91805 0.92576 0.90828 0.91419 0.92701 0.93867 0.93726 0.80578 0.93194 0.83528 0.81654 0.90879 0.89730 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.93 9.20 36.00 0.33 -0.59 16 2 C 0.10 1.22 6.89 -81.89 -0.56 0.65 16 3 C -0.23 -3.26 6.29 -103.35 -0.65 -3.91 16 4 C 0.59 9.28 7.80 -12.59 -0.10 9.18 16 5 O -0.56 -9.94 14.46 5.26 0.08 -9.86 16 6 N -0.72 -10.14 4.31 -54.93 -0.24 -10.37 16 7 C 0.14 2.02 2.53 -67.94 -0.17 1.85 16 8 H 0.10 1.50 5.69 -51.93 -0.30 1.21 16 9 C -0.16 -1.92 9.51 37.16 0.35 -1.57 16 10 C -0.14 -2.09 4.42 -26.74 -0.12 -2.21 16 11 C 0.18 3.49 2.90 -67.93 -0.20 3.29 16 12 H 0.05 1.11 7.51 -51.93 -0.39 0.72 16 13 C -0.17 -3.17 9.21 37.16 0.34 -2.82 16 14 N -0.75 -17.95 4.94 -53.42 -0.26 -18.22 16 15 C -0.24 -6.77 10.37 -15.06 -0.16 -6.92 16 16 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 17 C 0.00 0.05 5.50 -17.43 -0.10 -0.05 16 18 N -0.94 -29.73 13.97 55.49 0.78 -28.95 16 19 Si 0.89 22.33 28.01 -169.99 -4.76 17.57 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 22 H -0.28 -6.53 6.15 56.52 0.35 -6.18 16 23 C -0.16 -1.96 10.57 -37.50 -0.40 -2.35 16 24 C -0.02 -0.21 11.34 -16.82 -0.19 -0.40 16 25 N -0.45 -4.39 3.09 -119.88 -0.37 -4.76 16 26 C 0.07 0.37 10.60 59.85 0.63 1.00 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.44 7.59 -51.93 -0.39 0.04 16 29 H 0.10 1.19 6.60 -51.93 -0.34 0.85 16 30 H 0.40 5.23 7.79 -40.82 -0.32 4.91 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.04 0.76 6.52 -51.93 -0.34 0.42 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.36 8.45 5.50 -40.82 -0.22 8.23 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 41 H 0.15 1.58 7.71 -52.49 -0.40 1.17 16 42 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.37 7.51 -51.93 -0.39 -0.02 16 45 H 0.09 0.33 8.13 -51.93 -0.42 -0.10 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -35.08 364.50 -7.62 -42.70 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -7.36 Total: 11.26 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -0.98 Total: -4.87 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.10 Total: -62.30 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.76 Total: 17.57 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.08 -7.62 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135412968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.295 kcal (2) G-P(sol) polarization free energy of solvation -35.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds