Wall clock time and date at job start Tue Mar 31 2020 07:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.36765 * 125.80418 * 2 1 4 4 C 1.47268 * 126.94039 * 359.97438 * 3 2 1 5 5 O 1.21625 * 119.99736 * 354.32851 * 4 3 2 6 6 N 1.34780 * 119.99906 * 174.59840 * 4 3 2 7 7 C 1.46497 * 119.99923 * 185.36759 * 6 4 3 8 8 H 1.09005 * 109.47346 * 328.92419 * 7 6 4 9 9 C 1.52998 * 109.46989 * 88.92117 * 7 6 4 10 10 C 1.52992 * 109.47201 * 208.92282 * 7 6 4 11 11 C 1.53000 * 109.47271 * 63.10559 * 10 7 6 12 12 H 1.09000 * 109.47221 * 305.59572 * 11 10 7 13 13 C 1.53005 * 109.46895 * 65.59480 * 11 10 7 14 14 N 1.46501 * 109.47289 * 185.59491 * 11 10 7 15 15 C 1.36934 * 119.99918 * 159.12793 * 14 11 10 16 16 H 1.07999 * 120.00506 * 4.97707 * 15 14 11 17 17 C 1.38812 * 120.00014 * 184.97570 * 15 14 11 18 18 N 1.31624 * 120.00024 * 184.80776 * 17 15 14 19 19 Si 1.86805 * 119.99966 * 4.81559 * 17 15 14 20 20 H 1.48499 * 109.47174 * 94.52358 * 19 17 15 21 21 H 1.48504 * 109.46741 * 214.52714 * 19 17 15 22 22 H 1.48507 * 109.46667 * 334.52321 * 19 17 15 23 23 C 1.46692 * 106.12041 * 179.73734 * 3 2 1 24 24 C 1.34485 * 106.32952 * 0.26246 * 23 3 2 25 25 N 1.34664 * 125.80180 * 180.19027 * 2 1 3 26 26 C 1.46503 * 124.85191 * 359.97438 * 25 2 1 27 27 H 1.08998 * 109.47639 * 90.00251 * 1 2 3 28 28 H 1.09003 * 109.46997 * 210.00031 * 1 2 3 29 29 H 1.08997 * 109.47264 * 329.99781 * 1 2 3 30 30 H 0.96995 * 119.99894 * 5.37075 * 6 4 3 31 31 H 1.09001 * 109.47059 * 60.00437 * 9 7 6 32 32 H 1.09008 * 109.46915 * 179.97438 * 9 7 6 33 33 H 1.08992 * 109.47367 * 300.00353 * 9 7 6 34 34 H 1.09000 * 109.47296 * 183.10524 * 10 7 6 35 35 H 1.09003 * 109.47629 * 303.10507 * 10 7 6 36 36 H 1.09003 * 109.46811 * 180.02562 * 13 11 10 37 37 H 1.08995 * 109.47239 * 299.99824 * 13 11 10 38 38 H 1.09000 * 109.47364 * 60.00511 * 13 11 10 39 39 H 0.96998 * 119.99956 * 339.12081 * 14 11 10 40 40 H 0.96999 * 119.99983 * 180.02562 * 18 17 15 41 41 H 1.08001 * 126.83745 * 180.25496 * 23 3 2 42 42 H 1.08001 * 125.57442 * 179.97438 * 24 23 3 43 43 H 1.09004 * 109.46369 * 270.31203 * 26 25 2 44 44 H 1.08994 * 109.47178 * 30.30522 * 26 25 2 45 45 H 1.08995 * 109.47291 * 150.31390 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3070 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6888 2.7853 -0.1051 6 7 2.7800 3.5039 0.1094 7 6 2.3388 4.8958 0.2273 8 1 1.4016 5.0270 -0.3136 9 6 2.1285 5.2409 1.7030 10 6 3.4037 5.8204 -0.3659 11 6 3.5587 5.5275 -1.8596 12 1 3.7639 4.4665 -2.0025 13 6 2.2662 5.8996 -2.5890 14 7 4.6686 6.3166 -2.3995 15 6 5.2768 5.9346 -3.5653 16 1 4.8879 5.0995 -4.1289 17 6 6.3933 6.6209 -4.0229 18 7 6.9212 6.3155 -5.1894 19 14 7.1468 7.9776 -2.9831 20 1 8.2527 7.4180 -2.1651 21 1 7.6776 9.0439 -3.8700 22 1 6.1090 8.5493 -2.0879 23 6 3.6882 0.6151 0.0065 24 6 3.6095 -0.7274 0.0039 25 7 2.2947 -1.0922 -0.0036 26 6 1.8094 -2.4745 -0.0077 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5138 30 1 3.7268 3.2935 0.1104 31 1 3.0657 5.1098 2.2439 32 1 1.8007 6.2768 1.7907 33 1 1.3699 4.5823 2.1256 34 1 3.1009 6.8584 -0.2287 35 1 4.3549 5.6497 0.1383 36 1 2.3764 5.6905 -3.6531 37 1 1.4403 5.3124 -2.1874 38 1 2.0609 6.9605 -2.4462 39 1 4.9726 7.1098 -1.9311 40 1 7.7016 6.7948 -5.5090 41 1 4.5890 1.2109 0.0121 42 1 4.4497 -1.4061 0.0068 43 1 1.6841 -2.8185 1.0191 44 1 0.8517 -2.5218 -0.5260 45 1 2.5311 -3.1115 -0.5188 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135412968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:15 Heat of formation + Delta-G solvation = -9.619499 kcal Electronic energy + Delta-G solvation = -23819.227321 eV Core-core repulsion = 20450.635500 eV Total energy + Delta-G solvation = -3368.591821 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.25008 -40.39637 -38.31268 -36.18808 -34.14225 -33.69029 -32.50225 -32.07759 -30.69396 -27.65924 -27.51489 -27.16310 -25.51190 -23.66453 -22.30653 -21.42191 -20.92060 -20.04795 -19.50281 -18.33293 -17.06694 -16.85021 -16.51660 -16.43384 -16.08690 -15.46773 -15.34074 -15.06172 -14.66321 -14.36100 -14.30591 -13.99244 -13.96754 -13.84345 -13.61526 -13.49176 -13.27658 -13.14431 -12.94784 -12.82207 -12.79533 -12.68705 -12.44693 -12.20372 -12.02554 -11.81440 -11.56253 -11.50106 -10.95875 -10.76631 -9.96846 -9.47313 -9.28525 -9.07436 -7.99489 -5.32846 0.80053 1.39841 1.44916 1.52043 1.53732 1.93592 2.51662 2.55533 2.64293 3.31075 3.47615 3.86549 3.98220 4.01619 4.05253 4.16466 4.24812 4.27786 4.43692 4.45494 4.50218 4.60093 4.66777 4.67892 4.73821 4.75689 4.84856 4.92818 4.96302 5.00637 5.06380 5.08361 5.12601 5.29933 5.34865 5.40163 5.52213 5.73371 5.81127 5.83459 6.12939 6.25010 6.39583 6.76370 7.12082 7.44910 7.87935 8.09982 9.22538 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.003741 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.447055 B = 7481.885363 C = 8308.129564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.092 3.908 3 C -0.272 4.272 4 C 0.587 3.413 5 O -0.589 6.589 6 N -0.713 5.713 7 C 0.146 3.854 8 H 0.077 0.923 9 C -0.151 4.151 10 C -0.122 4.122 11 C 0.174 3.826 12 H 0.036 0.964 13 C -0.156 4.156 14 N -0.751 5.751 15 C -0.227 4.227 16 H 0.047 0.953 17 C -0.067 4.067 18 N -0.987 5.987 19 Si 0.963 3.037 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.247 1.247 23 C -0.188 4.188 24 C -0.012 4.012 25 N -0.444 5.444 26 C 0.059 3.941 27 H 0.075 0.925 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.405 0.595 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.368 0.632 40 H 0.257 0.743 41 H 0.150 0.850 42 H 0.199 0.801 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.783 -15.998 18.278 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C -0.282 4.282 4 C 0.378 3.622 5 O -0.472 6.472 6 N -0.363 5.363 7 C 0.041 3.959 8 H 0.095 0.905 9 C -0.210 4.210 10 C -0.160 4.160 11 C 0.066 3.934 12 H 0.054 0.946 13 C -0.216 4.216 14 N -0.395 5.395 15 C -0.359 4.359 16 H 0.065 0.935 17 C -0.258 4.258 18 N -0.638 5.638 19 Si 0.790 3.210 20 H -0.205 1.205 21 H -0.226 1.226 22 H -0.171 1.171 23 C -0.211 4.211 24 C -0.138 4.138 25 N -0.119 5.119 26 C -0.081 4.081 27 H 0.094 0.906 28 H 0.109 0.891 29 H 0.095 0.905 30 H 0.241 0.759 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.202 0.798 40 H 0.066 0.934 41 H 0.168 0.832 42 H 0.216 0.784 43 H 0.109 0.891 44 H 0.113 0.887 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.650 -16.288 18.051 26.960 hybrid contribution 1.249 0.800 -0.350 1.524 sum -10.401 -15.488 17.701 25.718 Atomic orbital electron populations 1.20469 0.86323 1.04134 1.03357 1.20551 0.94508 0.85693 1.01939 1.20306 0.94773 0.91786 1.21370 1.17654 0.84971 0.85044 0.74565 1.90667 1.18301 1.85026 1.53220 1.45828 1.09961 1.06208 1.74289 1.20945 0.97890 0.79934 0.97088 0.90480 1.22090 1.02149 1.02331 0.94387 1.22065 0.99431 1.00500 0.94004 1.20318 0.86539 0.94212 0.92305 0.94605 1.22296 0.98552 1.01146 0.99556 1.42843 1.39228 1.30782 1.26651 1.18961 1.06772 1.11834 0.98284 0.93517 1.25570 0.99097 1.02770 0.98374 1.69917 1.25908 1.46408 1.21548 0.85288 0.78881 0.78600 0.78224 1.20547 1.22602 1.17142 1.22253 0.95378 0.94838 1.08650 1.22200 0.86289 0.96148 1.09186 1.43843 1.05760 1.07133 1.55192 1.22428 1.02776 0.77927 1.04955 0.90639 0.89091 0.90464 0.75914 0.91412 0.90088 0.93454 0.89087 0.90323 0.95854 0.92472 0.92543 0.79790 0.93432 0.83207 0.78372 0.89091 0.88724 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.72 9.20 71.23 0.66 -1.06 16 2 C 0.09 2.18 6.89 41.78 0.29 2.47 16 3 C -0.27 -7.74 6.29 -19.04 -0.12 -7.86 16 4 C 0.59 18.88 7.80 86.62 0.68 19.55 16 5 O -0.59 -21.79 14.46 -4.11 -0.06 -21.85 16 6 N -0.71 -20.29 4.31 -445.96 -1.92 -22.21 16 7 C 0.15 3.98 2.53 44.99 0.11 4.10 16 8 H 0.08 2.41 5.69 -2.38 -0.01 2.40 16 9 C -0.15 -3.32 9.51 71.98 0.68 -2.64 16 10 C -0.12 -3.49 4.42 30.59 0.14 -3.36 16 11 C 0.17 6.76 2.90 44.99 0.13 6.89 16 12 H 0.04 1.53 7.51 -2.39 -0.02 1.51 16 13 C -0.16 -5.99 9.21 71.98 0.66 -5.33 16 14 N -0.75 -35.26 4.94 -322.93 -1.60 -36.85 16 15 C -0.23 -13.25 10.37 84.03 0.87 -12.38 16 16 H 0.05 3.05 8.06 -2.91 -0.02 3.02 16 17 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 18 N -0.99 -64.39 13.97 21.65 0.30 -64.09 16 19 Si 0.96 45.66 28.01 68.60 1.92 47.58 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 22 H -0.25 -10.31 6.15 99.48 0.61 -9.70 16 23 C -0.19 -4.47 10.57 23.62 0.25 -4.22 16 24 C -0.01 -0.22 11.34 83.11 0.94 0.72 16 25 N -0.44 -7.83 3.09 -533.20 -1.65 -9.48 16 26 C 0.06 0.45 10.60 127.77 1.35 1.81 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.17 7.59 -2.39 -0.02 1.15 16 29 H 0.08 1.92 6.60 -2.39 -0.02 1.90 16 30 H 0.41 10.62 7.79 -92.71 -0.72 9.90 16 31 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 2.02 6.52 -2.39 -0.02 2.01 16 38 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.37 16.25 5.50 -92.71 -0.51 15.74 16 40 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 41 H 0.15 3.25 7.71 -2.91 -0.02 3.23 16 42 H 0.20 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.09 0.42 8.14 -2.38 -0.02 0.41 16 44 H 0.09 0.56 7.51 -2.39 -0.02 0.54 16 45 H 0.11 0.42 8.13 -2.39 -0.02 0.40 16 Total: -1.00 -78.83 364.50 3.77 -75.06 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.34 Total: 36.69 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: 7.11 Total: -4.85 kcal Atomic # 7 Polarization: -127.77 SS G_CDS: -4.86 Total: -132.63 kcal Atomic # 8 Polarization: -21.79 SS G_CDS: -0.06 Total: -21.85 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 1.92 Total: 47.58 kcal Total: -78.83 3.77 -75.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135412968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.442 kcal (2) G-P(sol) polarization free energy of solvation -78.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds