Wall clock time and date at job start Tue Mar 31 2020 07:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36768 * 125.80338 * 2 1 4 4 C 1.47269 * 126.93880 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00325 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99470 * 179.97438 * 4 3 2 7 7 C 1.46496 * 119.99550 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47509 * 324.99724 * 7 6 4 9 9 C 1.52999 * 109.47410 * 85.00095 * 7 6 4 10 10 C 1.52998 * 109.47164 * 205.00192 * 7 6 4 11 11 C 1.52998 * 109.47384 * 64.99625 * 10 7 6 12 12 H 1.09003 * 109.47082 * 305.00221 * 11 10 7 13 13 C 1.52995 * 109.47443 * 185.00170 * 11 10 7 14 14 N 1.46498 * 109.47009 * 65.00045 * 11 10 7 15 15 C 1.36935 * 120.00239 * 204.99963 * 14 11 10 16 16 H 1.08004 * 120.00069 * 0.02562 * 15 14 11 17 17 C 1.38811 * 120.00368 * 180.02562 * 15 14 11 18 18 N 1.31624 * 119.99540 * 359.72375 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46758 * 269.72270 * 19 17 15 21 21 H 1.48499 * 109.47026 * 29.72118 * 19 17 15 22 22 H 1.48496 * 109.47474 * 149.72153 * 19 17 15 23 23 C 1.46680 * 106.11629 * 180.25047 * 3 2 1 24 24 C 1.34485 * 106.33295 * 359.62650 * 23 3 2 25 25 N 1.34661 * 125.80079 * 180.02562 * 2 1 3 26 26 C 1.46506 * 124.85079 * 359.97438 * 25 2 1 27 27 H 1.09001 * 109.47480 * 89.99503 * 1 2 3 28 28 H 1.08999 * 109.47292 * 209.99690 * 1 2 3 29 29 H 1.09004 * 109.47195 * 329.99444 * 1 2 3 30 30 H 0.96994 * 120.00258 * 359.97438 * 6 4 3 31 31 H 1.09003 * 109.47191 * 299.99550 * 9 7 6 32 32 H 1.08996 * 109.47126 * 60.00048 * 9 7 6 33 33 H 1.09004 * 109.47346 * 179.97438 * 9 7 6 34 34 H 1.08997 * 109.46877 * 305.00014 * 10 7 6 35 35 H 1.08999 * 109.47306 * 185.00166 * 10 7 6 36 36 H 1.08996 * 109.47329 * 300.00343 * 13 11 10 37 37 H 1.09003 * 109.46933 * 60.00266 * 13 11 10 38 38 H 1.09004 * 109.47411 * 179.97438 * 13 11 10 39 39 H 0.97004 * 119.99747 * 25.00702 * 14 11 10 40 40 H 0.97000 * 120.00481 * 0.27542 * 18 17 15 41 41 H 1.08008 * 126.83379 * 179.75575 * 23 3 2 42 42 H 1.08004 * 125.57472 * 180.16355 * 24 23 3 43 43 H 1.08994 * 109.46828 * 89.99810 * 26 25 2 44 44 H 1.08995 * 109.46920 * 210.00277 * 26 25 2 45 45 H 1.08999 * 109.46658 * 330.00019 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8702 2.5156 -0.0005 5 8 0.6839 2.7839 -0.0015 6 7 2.7850 3.5054 0.0001 7 6 2.3504 4.9044 0.0001 8 1 1.4390 5.0018 -0.5898 9 6 2.0784 5.3540 1.4370 10 6 3.4479 5.7794 -0.6089 11 6 3.6331 5.4131 -2.0828 12 1 3.8308 4.3446 -2.1696 13 6 4.8128 6.1985 -2.6592 14 7 2.4151 5.7462 -2.8255 15 6 2.1188 5.0842 -3.9870 16 1 2.7828 4.3161 -4.3554 17 6 0.9649 5.4001 -4.6911 18 7 0.1529 6.3323 -4.2393 19 14 0.5603 4.4966 -6.2752 20 1 1.1562 5.2229 -7.4252 21 1 1.1167 3.1210 -6.2164 22 1 -0.9135 4.4276 -6.4432 23 6 3.6881 0.6151 -0.0062 24 6 3.6095 -0.7274 -0.0009 25 7 2.2947 -1.0922 -0.0005 26 6 1.8093 -2.4745 -0.0006 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 3.7311 3.2914 0.0012 31 1 1.2965 4.7307 1.8709 32 1 2.9898 5.2566 2.0269 33 1 1.7555 6.3951 1.4371 34 1 4.3828 5.6147 -0.0734 35 1 3.1629 6.8283 -0.5282 36 1 4.6151 7.2668 -2.5724 37 1 5.7190 5.9506 -2.1066 38 1 4.9450 5.9372 -3.7092 39 1 1.8185 6.4358 -2.4946 40 1 0.3627 6.8013 -3.4165 41 1 4.5890 1.2109 -0.0115 42 1 4.4497 -1.4061 -0.0008 43 1 1.6886 -2.8170 -1.0282 44 1 2.5288 -3.1122 0.5129 45 1 0.8494 -2.5224 0.5136 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135412969.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:17:17 Heat of formation + Delta-G solvation = 11.120731 kcal Electronic energy + Delta-G solvation = -24289.104844 eV Core-core repulsion = 20921.412387 eV Total energy + Delta-G solvation = -3367.692457 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.29596 -38.96239 -36.68389 -34.42807 -32.96029 -32.13679 -31.49554 -30.44751 -28.20290 -26.68265 -26.30826 -26.18195 -23.33712 -22.51648 -20.95869 -20.02625 -19.62917 -18.87327 -17.42756 -17.16963 -15.71087 -15.62154 -15.58869 -14.73309 -14.33584 -14.17717 -13.93857 -13.49844 -13.34813 -13.08908 -13.04646 -12.93044 -12.76388 -12.63427 -12.50614 -12.08200 -12.03221 -11.89248 -11.58352 -11.57259 -11.43854 -10.88470 -10.64107 -10.35124 -10.33009 -9.97434 -9.89267 -9.30187 -9.02524 -8.76947 -8.63318 -8.45391 -8.05246 -6.86986 -5.94488 -2.92717 1.95874 2.47595 2.76177 3.59110 3.65414 3.78994 3.81316 4.00904 4.53503 4.77372 4.79725 4.86321 4.91250 5.10099 5.17179 5.27531 5.40969 5.50042 5.54012 5.61074 5.74309 5.75509 5.77565 5.94193 5.94951 6.01233 6.04273 6.07375 6.18198 6.27971 6.33603 6.42386 6.49549 6.59221 6.77557 6.83497 6.92083 7.06538 7.09795 7.14329 7.23918 7.95924 8.11546 8.88173 8.91203 9.39142 10.25169 10.40167 11.54353 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.005166 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.115196 B = 5418.236025 C = 6509.790469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.101 3.899 3 C -0.228 4.228 4 C 0.592 3.408 5 O -0.546 6.546 6 N -0.713 5.713 7 C 0.147 3.853 8 H 0.100 0.900 9 C -0.160 4.160 10 C -0.132 4.132 11 C 0.177 3.823 12 H 0.048 0.952 13 C -0.164 4.164 14 N -0.731 5.731 15 C -0.321 4.321 16 H 0.061 0.939 17 C -0.046 4.046 18 N -0.946 5.946 19 Si 1.079 2.921 20 H -0.297 1.297 21 H -0.297 1.297 22 H -0.289 1.289 23 C -0.166 4.166 24 C -0.023 4.023 25 N -0.449 5.449 26 C 0.069 3.931 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.101 0.899 30 H 0.392 0.608 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.043 0.957 37 H 0.035 0.965 38 H 0.052 0.948 39 H 0.365 0.635 40 H 0.255 0.745 41 H 0.143 0.857 42 H 0.164 0.836 43 H 0.074 0.926 44 H 0.083 0.917 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.157 -14.886 13.101 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.015 4.015 3 C -0.238 4.238 4 C 0.380 3.620 5 O -0.425 6.425 6 N -0.363 5.363 7 C 0.042 3.958 8 H 0.118 0.882 9 C -0.218 4.218 10 C -0.170 4.170 11 C 0.067 3.933 12 H 0.066 0.934 13 C -0.224 4.224 14 N -0.374 5.374 15 C -0.452 4.452 16 H 0.079 0.921 17 C -0.243 4.243 18 N -0.592 5.592 19 Si 0.911 3.089 20 H -0.225 1.225 21 H -0.224 1.224 22 H -0.215 1.215 23 C -0.190 4.190 24 C -0.149 4.149 25 N -0.126 5.126 26 C -0.073 4.073 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.120 0.880 30 H 0.226 0.774 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.071 0.929 39 H 0.198 0.802 40 H 0.066 0.934 41 H 0.161 0.839 42 H 0.182 0.818 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.232 -15.346 11.763 20.315 hybrid contribution 1.754 0.126 1.189 2.123 sum 7.986 -15.220 12.953 21.522 Atomic orbital electron populations 1.20564 0.87152 1.03713 1.03612 1.20320 0.93772 0.85138 1.02241 1.20225 0.93054 0.92329 1.18192 1.17248 0.85461 0.83867 0.75407 1.90735 1.16660 1.84280 1.50864 1.45689 1.09076 1.05858 1.75627 1.20931 0.99655 0.79620 0.95572 0.88166 1.22185 1.01258 1.01315 0.97087 1.22176 0.97652 0.99726 0.97476 1.20157 0.87546 0.97060 0.88544 0.93360 1.22440 0.98115 1.00644 1.01247 1.42395 1.23094 1.45245 1.26648 1.19987 1.07695 1.16945 1.00565 0.92142 1.25630 0.93667 1.00578 1.04414 1.70829 1.38661 1.25987 1.23730 0.83247 0.76041 0.74593 0.75053 1.22544 1.22379 1.21474 1.21987 0.95853 0.93513 1.07666 1.21606 0.85318 0.96190 1.11797 1.43505 1.06024 1.05989 1.57055 1.22057 1.01535 0.80230 1.03475 0.90321 0.92335 0.87997 0.77404 0.92472 0.93198 0.92019 0.92022 0.90959 0.93739 0.94640 0.92923 0.80158 0.93416 0.83898 0.81848 0.90737 0.89807 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.52 36.01 0.34 -0.89 16 2 C 0.10 1.47 6.89 -81.88 -0.56 0.91 16 3 C -0.23 -3.71 6.29 -103.35 -0.65 -4.36 16 4 C 0.59 11.24 7.77 -12.59 -0.10 11.14 16 5 O -0.55 -12.27 14.48 5.26 0.08 -12.19 16 6 N -0.71 -11.92 4.44 -54.93 -0.24 -12.16 16 7 C 0.15 2.58 2.52 -67.93 -0.17 2.40 16 8 H 0.10 2.27 7.05 -51.93 -0.37 1.90 16 9 C -0.16 -2.39 9.48 37.16 0.35 -2.03 16 10 C -0.13 -2.15 4.29 -26.73 -0.11 -2.27 16 11 C 0.18 3.58 2.84 -67.93 -0.19 3.38 16 12 H 0.05 1.03 7.56 -51.93 -0.39 0.64 16 13 C -0.16 -3.04 9.49 37.16 0.35 -2.69 16 14 N -0.73 -18.70 4.49 -53.43 -0.24 -18.94 16 15 C -0.32 -9.35 9.93 -15.06 -0.15 -9.50 16 16 H 0.06 1.77 7.83 -52.48 -0.41 1.36 16 17 C -0.05 -1.38 5.50 -17.43 -0.10 -1.48 16 18 N -0.95 -30.44 13.70 55.49 0.76 -29.68 16 19 Si 1.08 27.52 29.92 -169.99 -5.09 22.43 16 20 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 21 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 23 C -0.17 -2.15 10.56 -37.50 -0.40 -2.55 16 24 C -0.02 -0.26 11.34 -16.83 -0.19 -0.45 16 25 N -0.45 -5.08 3.09 -119.88 -0.37 -5.45 16 26 C 0.07 0.46 10.82 59.85 0.65 1.11 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 0.57 6.92 -51.93 -0.36 0.21 16 29 H 0.10 1.57 6.47 -51.93 -0.34 1.24 16 30 H 0.39 5.52 7.73 -40.82 -0.32 5.20 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.37 9.72 6.63 -40.82 -0.27 9.45 16 40 H 0.25 8.07 6.77 -40.82 -0.28 7.80 16 41 H 0.14 1.54 7.70 -52.48 -0.40 1.14 16 42 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 45 H 0.08 0.48 6.88 -51.93 -0.36 0.12 16 LS Contribution 367.81 15.07 5.54 5.54 Total: -1.00 -36.72 367.81 -7.85 -44.56 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -7.36 Total: 13.16 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -0.93 Total: -7.28 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -0.09 Total: -66.23 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.08 Total: -12.19 kcal Atomic # 14 Polarization: 27.52 SS G_CDS: -5.09 Total: 22.43 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.72 -7.85 -44.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135412969.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.684 kcal (2) G-P(sol) polarization free energy of solvation -36.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds