Wall clock time and date at job start Tue Mar 31 2020 07:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34485 * 125.57082 * 2 1 4 4 C 1.46687 * 106.32991 * 179.76337 * 3 2 1 5 5 C 1.47266 * 126.94218 * 180.24322 * 4 3 2 6 6 O 1.21625 * 120.00065 * 180.14666 * 5 4 3 7 7 N 1.34778 * 119.99728 * 0.14298 * 5 4 3 8 8 C 1.46505 * 119.99982 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.47207 * 34.99672 * 8 7 5 10 10 C 1.53003 * 109.46984 * 275.00097 * 8 7 5 11 11 C 1.52996 * 109.47452 * 155.00198 * 8 7 5 12 12 C 1.53006 * 109.46730 * 295.00165 * 11 8 7 13 13 H 1.08994 * 109.47487 * 55.00249 * 12 11 8 14 14 C 1.53001 * 109.46974 * 175.00140 * 12 11 8 15 15 N 1.46500 * 109.46869 * 294.99470 * 12 11 8 16 16 C 1.36943 * 119.99689 * 155.00521 * 15 12 11 17 17 H 1.07998 * 119.99947 * 359.97438 * 16 15 12 18 18 C 1.38811 * 119.99768 * 180.02562 * 16 15 12 19 19 N 1.31619 * 119.99318 * 179.97438 * 18 16 15 20 20 Si 1.86790 * 120.00314 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47439 * 90.00103 * 20 18 16 22 22 H 1.48496 * 109.47238 * 210.00345 * 20 18 16 23 23 H 1.48501 * 109.47251 * 330.00025 * 20 18 16 24 24 C 1.36763 * 106.11655 * 0.36174 * 4 3 2 25 25 C 1.50703 * 125.80214 * 179.90173 * 24 4 3 26 26 N 1.34655 * 108.39820 * 359.63845 * 24 4 3 27 27 H 0.96996 * 124.85576 * 180.26425 * 26 24 4 28 28 H 1.09005 * 109.46636 * 269.99713 * 1 2 3 29 29 H 1.09005 * 109.47306 * 29.99303 * 1 2 3 30 30 H 1.08995 * 109.47100 * 149.99823 * 1 2 3 31 31 H 1.08004 * 126.83639 * 359.97438 * 3 2 1 32 32 H 0.96999 * 120.00551 * 0.02562 * 7 5 4 33 33 H 1.09006 * 109.46929 * 59.99656 * 10 8 7 34 34 H 1.08999 * 109.46732 * 179.97438 * 10 8 7 35 35 H 1.08994 * 109.47219 * 299.99723 * 10 8 7 36 36 H 1.08997 * 109.47018 * 54.99491 * 11 8 7 37 37 H 1.09000 * 109.47426 * 175.00203 * 11 8 7 38 38 H 1.09001 * 109.47203 * 59.99171 * 14 12 11 39 39 H 1.08994 * 109.47411 * 180.02562 * 14 12 11 40 40 H 1.09002 * 109.46805 * 300.00026 * 14 12 11 41 41 H 0.97000 * 120.00254 * 335.00783 * 15 12 11 42 42 H 0.97004 * 119.99695 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47152 * 269.71596 * 25 24 4 44 44 H 1.09001 * 109.46980 * 149.71697 * 25 24 4 45 45 H 1.09004 * 109.47113 * 29.71678 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6105 0.0058 5 6 4.8978 1.4301 0.0130 6 8 5.9892 0.8935 0.0146 7 7 4.8080 2.7749 0.0176 8 6 6.0251 3.5903 0.0241 9 1 6.7972 3.0953 -0.5648 10 6 6.5146 3.7644 1.4633 11 6 5.7230 4.9625 -0.5813 12 6 5.3535 4.7986 -2.0570 13 1 4.5287 4.0920 -2.1487 14 6 4.9310 6.1528 -2.6304 15 7 6.5128 4.2950 -2.7976 16 6 6.3311 3.5975 -3.9621 17 1 5.3331 3.4185 -4.3341 18 6 7.4295 3.1199 -4.6636 19 7 7.2547 2.4491 -5.7825 20 14 9.1555 3.4290 -4.0197 21 1 9.5564 2.3150 -3.1233 22 1 10.1021 3.5113 -5.1608 23 1 9.1801 4.7065 -3.2631 24 6 3.5998 -0.7551 0.0005 25 6 4.7722 -1.7020 0.0015 26 7 2.3008 -1.1098 0.0003 27 1 1.9757 -2.0237 0.0007 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3633 -0.8899 -0.5138 31 1 1.9629 2.1234 -0.0004 32 1 3.9375 3.2029 0.0166 33 1 6.7298 2.7868 1.8946 34 1 7.4204 4.3707 1.4680 35 1 5.7425 4.2594 2.0522 36 1 4.8904 5.4200 -0.0470 37 1 6.6035 5.5993 -0.4958 38 1 5.7558 6.8595 -2.5386 39 1 4.6674 6.0360 -3.6815 40 1 4.0685 6.5275 -2.0792 41 1 7.4091 4.4555 -2.4632 42 1 8.0223 2.1150 -6.2725 43 1 5.0555 -1.9305 -1.0260 44 1 4.4953 -2.6225 0.5153 45 1 5.6137 -1.2378 0.5157 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135561819.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:04 Heat of formation + Delta-G solvation = -25.680956 kcal Electronic energy + Delta-G solvation = -24251.553310 eV Core-core repulsion = 20882.265012 eV Total energy + Delta-G solvation = -3369.288298 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.24473 -40.32511 -38.29241 -36.05269 -34.08036 -33.48935 -32.74477 -31.39909 -30.79293 -29.94538 -27.58727 -25.92634 -25.32029 -23.77000 -22.06557 -21.43047 -21.05055 -20.62127 -19.62946 -18.01399 -17.08469 -16.86615 -16.56521 -16.20505 -15.88341 -15.31943 -15.21369 -14.83136 -14.57560 -14.52400 -14.26353 -14.10553 -14.03518 -13.96539 -13.48007 -13.39292 -13.19353 -13.04383 -12.94869 -12.90588 -12.81381 -12.62241 -12.38091 -12.26894 -11.98943 -11.86420 -11.66552 -11.41048 -10.96012 -10.73535 -9.99699 -9.65714 -9.25139 -8.91929 -8.00232 -5.29890 0.80396 1.33017 1.40377 1.43945 1.48328 2.16177 2.49341 2.58703 2.70788 3.33081 3.67555 3.83841 3.88793 4.02112 4.11641 4.25060 4.30644 4.38757 4.51404 4.55251 4.65953 4.68834 4.70816 4.79109 4.85283 4.85644 4.91067 4.93352 5.02259 5.07048 5.09376 5.17791 5.23337 5.34438 5.36923 5.43701 5.62292 5.75314 5.81788 5.85984 6.02572 6.24862 6.64476 6.83611 7.12607 7.52751 7.91381 8.07608 9.22332 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013519 B = 0.004858 C = 0.004531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.665092 B = 5761.954242 C = 6178.757721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.018 3.982 3 C -0.183 4.183 4 C -0.264 4.264 5 C 0.580 3.420 6 O -0.596 6.596 7 N -0.703 5.703 8 C 0.142 3.858 9 H 0.047 0.953 10 C -0.150 4.150 11 C -0.120 4.120 12 C 0.167 3.833 13 H 0.039 0.961 14 C -0.156 4.156 15 N -0.748 5.748 16 C -0.212 4.212 17 H 0.051 0.949 18 C -0.068 4.068 19 N -0.988 5.988 20 Si 0.948 3.052 21 H -0.292 1.292 22 H -0.295 1.295 23 H -0.246 1.246 24 C 0.091 3.909 25 C -0.090 4.090 26 N -0.537 5.537 27 H 0.429 0.571 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.408 0.592 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.051 0.949 39 H 0.025 0.975 40 H 0.079 0.921 41 H 0.361 0.639 42 H 0.254 0.746 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.756 -1.463 19.255 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.207 4.207 4 C -0.274 4.274 5 C 0.370 3.630 6 O -0.479 6.479 7 N -0.353 5.353 8 C 0.038 3.962 9 H 0.065 0.935 10 C -0.209 4.209 11 C -0.158 4.158 12 C 0.059 3.941 13 H 0.058 0.942 14 C -0.215 4.215 15 N -0.392 5.392 16 C -0.343 4.343 17 H 0.069 0.931 18 C -0.259 4.259 19 N -0.640 5.640 20 Si 0.776 3.224 21 H -0.219 1.219 22 H -0.222 1.222 23 H -0.170 1.170 24 C -0.028 4.028 25 C -0.148 4.148 26 N -0.135 5.135 27 H 0.269 0.731 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.097 0.903 31 H 0.177 0.823 32 H 0.244 0.756 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.071 0.929 39 H 0.044 0.956 40 H 0.097 0.903 41 H 0.194 0.806 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.197 -1.996 19.106 23.886 hybrid contribution 1.017 -0.459 -0.581 1.258 sum -13.180 -2.455 18.525 22.867 Atomic orbital electron populations 1.20441 0.84737 1.04550 1.03973 1.20781 0.95083 0.85300 1.08014 1.22022 0.89691 0.99275 1.09692 1.20309 0.93499 0.93215 1.20358 1.17794 0.87901 0.82653 0.74644 1.90689 1.30513 1.73294 1.53369 1.45614 1.09893 1.05108 1.74714 1.20896 0.87032 0.91555 0.96764 0.93503 1.22087 1.02284 1.01322 0.95162 1.22130 1.04209 0.95089 0.94374 1.20499 0.89045 0.93869 0.90657 0.94245 1.22272 1.01242 0.97932 1.00088 1.42810 1.04374 1.66209 1.25763 1.18963 0.93085 1.24155 0.98108 0.93060 1.25407 1.01579 1.01186 0.97689 1.69883 1.30365 1.44702 1.19068 0.85498 0.80820 0.78839 0.77215 1.21922 1.22170 1.16987 1.20412 0.86169 0.94187 1.02016 1.20490 0.93842 0.97372 1.03067 1.41482 1.04196 1.09783 1.58036 0.73125 0.89373 0.89185 0.90314 0.82264 0.75611 0.94546 0.90644 0.90157 0.87271 0.89488 0.92945 0.95598 0.90252 0.80558 0.93726 0.91464 0.88553 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.41 71.24 0.74 -0.11 16 2 C 0.02 0.35 7.13 40.98 0.29 0.64 16 3 C -0.18 -4.52 10.45 23.62 0.25 -4.27 16 4 C -0.26 -8.55 6.29 -19.04 -0.12 -8.67 16 5 C 0.58 22.22 7.77 86.62 0.67 22.90 16 6 O -0.60 -27.64 14.47 -4.11 -0.06 -27.70 16 7 N -0.70 -22.32 4.44 -445.94 -1.98 -24.30 16 8 C 0.14 4.57 2.52 44.99 0.11 4.69 16 9 H 0.05 2.01 7.05 -2.39 -0.02 2.00 16 10 C -0.15 -3.89 9.48 71.98 0.68 -3.21 16 11 C -0.12 -3.25 4.29 30.59 0.13 -3.12 16 12 C 0.17 6.12 2.84 44.99 0.13 6.25 16 13 H 0.04 1.58 7.56 -2.39 -0.02 1.56 16 14 C -0.16 -5.04 9.49 71.98 0.68 -4.35 16 15 N -0.75 -35.98 4.30 -322.93 -1.39 -37.36 16 16 C -0.21 -12.68 10.41 84.03 0.87 -11.81 16 17 H 0.05 3.38 8.06 -2.91 -0.02 3.36 16 18 C -0.07 -4.26 5.50 84.86 0.47 -3.80 16 19 N -0.99 -67.06 13.97 21.65 0.30 -66.76 16 20 Si 0.95 49.21 27.73 68.60 1.90 51.11 16 21 H -0.29 -15.50 7.11 99.48 0.71 -14.80 16 22 H -0.29 -15.29 7.11 99.48 0.71 -14.58 16 23 H -0.25 -11.29 6.52 99.48 0.65 -10.64 16 24 C 0.09 2.57 7.17 41.78 0.30 2.87 16 25 C -0.09 -2.42 9.89 71.24 0.70 -1.72 16 26 N -0.54 -10.72 5.90 -171.07 -1.01 -11.73 16 27 H 0.43 5.30 8.96 -92.71 -0.83 4.47 16 28 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.16 3.15 7.70 -2.91 -0.02 3.12 16 32 H 0.41 10.31 7.73 -92.71 -0.72 9.60 16 33 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.36 17.00 5.66 -92.71 -0.52 16.48 16 42 H 0.25 16.49 8.31 -92.70 -0.77 15.72 16 43 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 44 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.07 2.45 6.45 -2.38 -0.02 2.44 16 Total: -1.00 -85.43 368.52 2.56 -82.87 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -1.13 Total: 37.58 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.92 Total: -3.71 kcal Atomic # 7 Polarization: -136.08 SS G_CDS: -4.08 Total: -140.16 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.06 Total: -27.70 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 1.90 Total: 51.11 kcal Total: -85.43 2.56 -82.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135561819.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.194 kcal (2) G-P(sol) polarization free energy of solvation -85.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds