Wall clock time and date at job start Tue Mar 31 2020 07:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34486 * 125.57262 * 2 1 4 4 C 1.46687 * 106.33571 * 180.14532 * 3 2 1 5 5 C 1.47256 * 126.94598 * 179.82813 * 4 3 2 6 6 O 1.21633 * 120.00315 * 179.68355 * 5 4 3 7 7 N 1.34777 * 120.00032 * 359.69091 * 5 4 3 8 8 C 1.46500 * 120.00075 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47092 * 324.99806 * 8 7 5 10 10 C 1.52997 * 109.47007 * 84.99755 * 8 7 5 11 11 C 1.53000 * 109.47023 * 204.99547 * 8 7 5 12 12 C 1.53006 * 109.46846 * 65.00406 * 11 8 7 13 13 H 1.09000 * 109.46628 * 304.99786 * 12 11 8 14 14 C 1.52996 * 109.46918 * 185.00050 * 12 11 8 15 15 N 1.46496 * 109.47292 * 64.99950 * 12 11 8 16 16 C 1.36937 * 119.99915 * 205.00113 * 15 12 11 17 17 H 1.07996 * 120.00209 * 0.02562 * 16 15 12 18 18 C 1.38811 * 119.99929 * 179.97438 * 16 15 12 19 19 N 1.31617 * 120.00070 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99883 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47481 * 89.99907 * 20 18 16 22 22 H 1.48503 * 109.47253 * 209.99738 * 20 18 16 23 23 H 1.48501 * 109.47134 * 329.99762 * 20 18 16 24 24 C 1.36777 * 106.11102 * 359.57147 * 4 3 2 25 25 C 1.50708 * 125.79813 * 180.28345 * 24 4 3 26 26 N 1.34652 * 108.39773 * 0.25759 * 24 4 3 27 27 H 0.96997 * 124.85029 * 180.02562 * 26 24 4 28 28 H 1.08995 * 109.47273 * 270.31448 * 1 2 3 29 29 H 1.09001 * 109.46971 * 30.31249 * 1 2 3 30 30 H 1.08999 * 109.47177 * 150.31161 * 1 2 3 31 31 H 1.08000 * 126.83642 * 359.97438 * 3 2 1 32 32 H 0.96997 * 119.99651 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.47853 * 300.00060 * 10 8 7 34 34 H 1.09002 * 109.47153 * 60.00089 * 10 8 7 35 35 H 1.08998 * 109.47533 * 179.97438 * 10 8 7 36 36 H 1.09002 * 109.47069 * 184.99840 * 11 8 7 37 37 H 1.08991 * 109.47625 * 305.00159 * 11 8 7 38 38 H 1.08993 * 109.47728 * 59.99548 * 14 12 11 39 39 H 1.08998 * 109.47041 * 180.02562 * 14 12 11 40 40 H 1.09009 * 109.47313 * 299.99451 * 14 12 11 41 41 H 0.96995 * 120.00406 * 24.99575 * 15 12 11 42 42 H 0.97004 * 119.99962 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46922 * 90.00168 * 25 24 4 44 44 H 1.08996 * 109.46741 * 209.99511 * 25 24 4 45 45 H 1.08993 * 109.46825 * 329.99719 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6106 -0.0036 5 6 4.8977 1.4301 -0.0084 6 8 5.9893 0.8935 -0.0052 7 7 4.8080 2.7749 -0.0163 8 6 6.0251 3.5902 -0.0205 9 1 6.7952 3.0965 0.5722 10 6 6.5194 3.7612 -1.4583 11 6 5.7209 4.9638 0.5809 12 6 5.3465 4.8031 2.0558 13 1 4.5214 4.0966 2.1462 14 6 4.9221 6.1585 2.6247 15 7 6.5033 4.3011 2.8014 16 6 6.3177 3.6062 3.9666 17 1 5.3186 3.4278 4.3357 18 6 7.4138 3.1300 4.6728 19 7 8.6314 3.3461 4.2222 20 14 7.1606 2.1815 6.2620 21 1 7.0394 0.7326 5.9598 22 1 8.3210 2.4040 7.1616 23 1 5.9202 2.6536 6.9281 24 6 3.5997 -0.7551 0.0044 25 6 4.7722 -1.7020 0.0104 26 7 2.3008 -1.1098 0.0065 27 1 1.9757 -2.0237 0.0122 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8872 -0.5187 30 1 -0.3633 -0.8928 -0.5090 31 1 1.9629 2.1234 -0.0004 32 1 3.9375 3.2028 -0.0191 33 1 6.7361 2.7828 -1.8869 34 1 5.7492 4.2549 -2.0510 35 1 7.4247 4.3682 -1.4616 36 1 6.6017 5.6003 0.4970 37 1 4.8902 5.4202 0.0428 38 1 4.0615 6.5321 2.0700 39 1 4.6558 6.0441 3.6754 40 1 5.7472 6.8651 2.5342 41 1 7.4007 4.4609 2.4697 42 1 9.3974 3.0130 4.7156 43 1 5.0544 -1.9242 1.0395 44 1 4.4959 -2.6256 -0.4980 45 1 5.6141 -1.2408 -0.5058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135561823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:06 Heat of formation + Delta-G solvation = -3.250387 kcal Electronic energy + Delta-G solvation = -24201.433949 eV Core-core repulsion = 20833.118313 eV Total energy + Delta-G solvation = -3368.315635 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.25211 -38.89292 -36.57183 -34.27050 -32.62413 -32.08340 -31.35046 -29.94338 -29.10911 -28.47653 -26.19400 -24.89941 -23.51786 -22.57337 -20.69419 -20.23198 -19.50931 -19.27185 -17.14898 -16.88757 -15.69938 -15.52451 -15.13488 -14.63455 -14.10422 -13.83184 -13.81036 -13.61498 -13.39197 -13.26433 -13.06178 -12.80331 -12.59506 -12.47059 -12.31671 -12.10157 -12.01592 -11.81146 -11.61883 -11.48910 -11.38467 -10.91658 -10.73433 -10.50366 -10.27024 -10.11862 -9.77161 -9.51091 -9.26300 -8.77637 -8.77096 -8.41784 -7.92811 -6.80457 -5.62607 -2.89616 1.97926 2.41755 3.09550 3.52197 3.56900 3.58069 3.85668 4.03274 4.71532 4.73490 4.91292 5.03688 5.22552 5.27602 5.34152 5.38273 5.57107 5.61128 5.62831 5.68761 5.74211 5.75899 5.84261 5.88391 6.03598 6.08718 6.09615 6.14353 6.27248 6.33285 6.41839 6.49811 6.58014 6.70088 6.84127 6.89248 6.99036 7.01682 7.15738 7.20682 7.46055 7.82993 8.15806 8.56085 8.91831 9.67294 10.25599 10.59941 11.60401 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.005071 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.283617 B = 5520.391670 C = 6310.050758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.004 3.996 3 C -0.164 4.164 4 C -0.223 4.223 5 C 0.590 3.410 6 O -0.545 6.545 7 N -0.712 5.712 8 C 0.145 3.855 9 H 0.105 0.895 10 C -0.160 4.160 11 C -0.130 4.130 12 C 0.171 3.829 13 H 0.047 0.953 14 C -0.165 4.165 15 N -0.719 5.719 16 C -0.229 4.229 17 H 0.066 0.934 18 C -0.013 4.013 19 N -0.932 5.932 20 Si 0.901 3.099 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.284 1.284 24 C 0.102 3.898 25 C -0.094 4.094 26 N -0.553 5.553 27 H 0.411 0.589 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.143 0.857 32 H 0.392 0.608 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.033 0.967 39 H 0.051 0.949 40 H 0.045 0.955 41 H 0.383 0.617 42 H 0.253 0.747 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.725 -5.044 -13.099 21.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.105 4.105 3 C -0.188 4.188 4 C -0.233 4.233 5 C 0.379 3.621 6 O -0.424 6.424 7 N -0.362 5.362 8 C 0.041 3.959 9 H 0.122 0.878 10 C -0.218 4.218 11 C -0.169 4.169 12 C 0.061 3.939 13 H 0.065 0.935 14 C -0.225 4.225 15 N -0.361 5.361 16 C -0.361 4.361 17 H 0.084 0.916 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.733 3.267 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.210 1.210 24 C -0.015 4.015 25 C -0.151 4.151 26 N -0.149 5.149 27 H 0.247 0.753 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.225 0.775 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.216 0.784 42 H 0.063 0.937 43 H 0.097 0.903 44 H 0.077 0.923 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -15.050 -5.601 -12.940 20.623 hybrid contribution -0.477 -0.594 0.960 1.225 sum -15.527 -6.194 -11.980 20.566 Atomic orbital electron populations 1.20295 0.87981 1.03027 1.02649 1.20144 0.93291 0.86106 1.10949 1.21777 0.91032 0.97596 1.08383 1.20241 0.93121 0.92275 1.17682 1.17244 0.87502 0.81866 0.75531 1.90742 1.28551 1.72333 1.50788 1.45708 1.09322 1.05664 1.75494 1.20972 0.87892 0.91410 0.95614 0.87754 1.22180 1.00758 1.01760 0.97118 1.22156 1.01659 0.95654 0.97414 1.20224 0.91702 0.93149 0.88798 0.93516 1.22455 0.99201 0.99718 1.01122 1.42381 1.03135 1.65065 1.25513 1.19160 0.92380 1.26100 0.98450 0.91585 1.24665 0.95312 1.01719 0.99154 1.69648 0.96971 1.51293 1.40199 0.86273 0.76652 0.80105 0.83692 1.21894 1.21907 1.20978 1.20309 0.84677 0.94437 1.02081 1.20570 0.94764 0.96082 1.03713 1.41479 1.05377 1.08551 1.59511 0.75271 0.91079 0.90128 0.92029 0.83967 0.77454 0.92560 0.93318 0.91964 0.90799 0.92200 0.94766 0.93000 0.93606 0.78370 0.93710 0.90312 0.92294 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.41 36.00 0.37 -0.20 16 2 C 0.00 0.04 7.13 -81.87 -0.58 -0.54 16 3 C -0.16 -2.11 10.45 -37.50 -0.39 -2.50 16 4 C -0.22 -3.56 6.29 -103.35 -0.65 -4.21 16 5 C 0.59 11.05 7.77 -12.60 -0.10 10.95 16 6 O -0.55 -12.11 14.47 5.25 0.08 -12.03 16 7 N -0.71 -11.74 4.44 -54.93 -0.24 -11.99 16 8 C 0.15 2.54 2.52 -67.93 -0.17 2.37 16 9 H 0.10 2.36 7.05 -51.93 -0.37 1.99 16 10 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 11 C -0.13 -2.11 4.29 -26.73 -0.11 -2.23 16 12 C 0.17 3.41 2.84 -67.93 -0.19 3.21 16 13 H 0.05 0.97 7.56 -51.93 -0.39 0.57 16 14 C -0.16 -3.00 9.49 37.16 0.35 -2.64 16 15 N -0.72 -18.29 4.49 -53.43 -0.24 -18.53 16 16 C -0.23 -6.58 9.93 -15.06 -0.15 -6.73 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -29.14 13.06 55.49 0.72 -28.42 16 20 Si 0.90 23.49 29.55 -169.99 -5.02 18.47 16 21 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 22 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 23 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 24 C 0.10 1.42 7.18 -81.88 -0.59 0.84 16 25 C -0.09 -1.21 9.88 36.01 0.36 -0.85 16 26 N -0.55 -5.89 5.90 -5.42 -0.03 -5.92 16 27 H 0.41 2.97 8.96 -40.82 -0.37 2.60 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 1.54 7.70 -52.49 -0.40 1.13 16 32 H 0.39 5.41 7.73 -40.82 -0.32 5.10 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.38 10.40 7.80 -40.82 -0.32 10.08 16 42 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 1.56 6.46 -51.93 -0.34 1.23 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -35.15 371.64 -8.28 -43.43 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: -7.54 Total: 14.42 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.60 Total: -5.04 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: 0.21 Total: -64.86 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: 0.08 Total: -12.03 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.15 -8.28 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135561823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.180 kcal (2) G-P(sol) polarization free energy of solvation -35.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds