Wall clock time and date at job start Tue Mar 31 2020 07:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34486 * 125.57262 * 2 1 4 4 C 1.46687 * 106.33571 * 180.14532 * 3 2 1 5 5 C 1.47256 * 126.94598 * 179.82813 * 4 3 2 6 6 O 1.21633 * 120.00315 * 179.68355 * 5 4 3 7 7 N 1.34777 * 120.00032 * 359.69091 * 5 4 3 8 8 C 1.46500 * 120.00075 * 179.97438 * 7 5 4 9 9 H 1.09002 * 109.47092 * 324.99806 * 8 7 5 10 10 C 1.52997 * 109.47007 * 84.99755 * 8 7 5 11 11 C 1.53000 * 109.47023 * 204.99547 * 8 7 5 12 12 C 1.53006 * 109.46846 * 65.00406 * 11 8 7 13 13 H 1.09000 * 109.46628 * 304.99786 * 12 11 8 14 14 C 1.52996 * 109.46918 * 185.00050 * 12 11 8 15 15 N 1.46496 * 109.47292 * 64.99950 * 12 11 8 16 16 C 1.36937 * 119.99915 * 205.00113 * 15 12 11 17 17 H 1.07996 * 120.00209 * 0.02562 * 16 15 12 18 18 C 1.38811 * 119.99929 * 179.97438 * 16 15 12 19 19 N 1.31617 * 120.00070 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99883 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47481 * 89.99907 * 20 18 16 22 22 H 1.48503 * 109.47253 * 209.99738 * 20 18 16 23 23 H 1.48501 * 109.47134 * 329.99762 * 20 18 16 24 24 C 1.36777 * 106.11102 * 359.57147 * 4 3 2 25 25 C 1.50708 * 125.79813 * 180.28345 * 24 4 3 26 26 N 1.34652 * 108.39773 * 0.25759 * 24 4 3 27 27 H 0.96997 * 124.85029 * 180.02562 * 26 24 4 28 28 H 1.08995 * 109.47273 * 270.31448 * 1 2 3 29 29 H 1.09001 * 109.46971 * 30.31249 * 1 2 3 30 30 H 1.08999 * 109.47177 * 150.31161 * 1 2 3 31 31 H 1.08000 * 126.83642 * 359.97438 * 3 2 1 32 32 H 0.96997 * 119.99651 * 359.97438 * 7 5 4 33 33 H 1.08996 * 109.47853 * 300.00060 * 10 8 7 34 34 H 1.09002 * 109.47153 * 60.00089 * 10 8 7 35 35 H 1.08998 * 109.47533 * 179.97438 * 10 8 7 36 36 H 1.09002 * 109.47069 * 184.99840 * 11 8 7 37 37 H 1.08991 * 109.47625 * 305.00159 * 11 8 7 38 38 H 1.08993 * 109.47728 * 59.99548 * 14 12 11 39 39 H 1.08998 * 109.47041 * 180.02562 * 14 12 11 40 40 H 1.09009 * 109.47313 * 299.99451 * 14 12 11 41 41 H 0.96995 * 120.00406 * 24.99575 * 15 12 11 42 42 H 0.97004 * 119.99962 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46922 * 90.00168 * 25 24 4 44 44 H 1.08996 * 109.46741 * 209.99511 * 25 24 4 45 45 H 1.08993 * 109.46825 * 329.99719 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2893 1.0939 0.0000 4 6 3.6743 0.6106 -0.0036 5 6 4.8977 1.4301 -0.0084 6 8 5.9893 0.8935 -0.0052 7 7 4.8080 2.7749 -0.0163 8 6 6.0251 3.5902 -0.0205 9 1 6.7952 3.0965 0.5722 10 6 6.5194 3.7612 -1.4583 11 6 5.7209 4.9638 0.5809 12 6 5.3465 4.8031 2.0558 13 1 4.5214 4.0966 2.1462 14 6 4.9221 6.1585 2.6247 15 7 6.5033 4.3011 2.8014 16 6 6.3177 3.6062 3.9666 17 1 5.3186 3.4278 4.3357 18 6 7.4138 3.1300 4.6728 19 7 8.6314 3.3461 4.2222 20 14 7.1606 2.1815 6.2620 21 1 7.0394 0.7326 5.9598 22 1 8.3210 2.4040 7.1616 23 1 5.9202 2.6536 6.9281 24 6 3.5997 -0.7551 0.0044 25 6 4.7722 -1.7020 0.0104 26 7 2.3008 -1.1098 0.0065 27 1 1.9757 -2.0237 0.0122 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8872 -0.5187 30 1 -0.3633 -0.8928 -0.5090 31 1 1.9629 2.1234 -0.0004 32 1 3.9375 3.2028 -0.0191 33 1 6.7361 2.7828 -1.8869 34 1 5.7492 4.2549 -2.0510 35 1 7.4247 4.3682 -1.4616 36 1 6.6017 5.6003 0.4970 37 1 4.8902 5.4202 0.0428 38 1 4.0615 6.5321 2.0700 39 1 4.6558 6.0441 3.6754 40 1 5.7472 6.8651 2.5342 41 1 7.4007 4.4609 2.4697 42 1 9.3974 3.0130 4.7156 43 1 5.0544 -1.9242 1.0395 44 1 4.4959 -2.6256 -0.4980 45 1 5.6141 -1.2408 -0.5058 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135561823.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:06 Heat of formation + Delta-G solvation = -27.808209 kcal Electronic energy + Delta-G solvation = -24202.498856 eV Core-core repulsion = 20833.118313 eV Total energy + Delta-G solvation = -3369.380542 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.23953 -40.29138 -38.17342 -35.97435 -34.00789 -33.48037 -32.66981 -31.18466 -30.37115 -29.93813 -27.56938 -25.93285 -25.61525 -23.76877 -22.02935 -21.35170 -20.98681 -20.56053 -19.22406 -17.98976 -17.05842 -16.81707 -16.55867 -16.16966 -15.60979 -15.53597 -15.25085 -14.79903 -14.51763 -14.48403 -14.19370 -14.07427 -14.01138 -13.58672 -13.45614 -13.31551 -13.12442 -13.01834 -12.90765 -12.89875 -12.78649 -12.63391 -12.37125 -12.20659 -12.17178 -11.79066 -11.53099 -11.38761 -10.90666 -10.71212 -9.97939 -9.64641 -8.93080 -8.91109 -7.90282 -5.15300 0.81207 1.41102 1.44517 1.48927 1.51303 2.16720 2.56767 2.60906 2.71797 3.43873 3.85204 3.89220 4.00141 4.05791 4.16317 4.25636 4.32282 4.45201 4.52215 4.58321 4.66653 4.69751 4.73940 4.81712 4.86121 4.86540 4.91853 4.97429 5.05877 5.08417 5.12320 5.18547 5.25854 5.35380 5.40245 5.47568 5.54605 5.65899 5.79222 5.86349 6.03220 6.33050 6.65299 6.86232 7.38442 7.55701 8.19102 8.39215 9.33699 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.011751 B = 0.005071 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.283617 B = 5520.391670 C = 6310.050758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.019 3.981 3 C -0.183 4.183 4 C -0.262 4.262 5 C 0.578 3.422 6 O -0.596 6.596 7 N -0.701 5.701 8 C 0.148 3.852 9 H 0.044 0.956 10 C -0.149 4.149 11 C -0.117 4.117 12 C 0.164 3.836 13 H 0.039 0.961 14 C -0.155 4.155 15 N -0.731 5.731 16 C -0.224 4.224 17 H 0.067 0.933 18 C -0.078 4.078 19 N -0.969 5.969 20 Si 0.961 3.039 21 H -0.297 1.297 22 H -0.293 1.293 23 H -0.268 1.268 24 C 0.091 3.909 25 C -0.090 4.090 26 N -0.537 5.537 27 H 0.429 0.571 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.407 0.593 33 H 0.035 0.965 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.043 0.957 41 H 0.370 0.630 42 H 0.247 0.753 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.429 -4.656 -13.979 24.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 C -0.206 4.206 4 C -0.272 4.272 5 C 0.368 3.632 6 O -0.479 6.479 7 N -0.352 5.352 8 C 0.043 3.957 9 H 0.062 0.938 10 C -0.207 4.207 11 C -0.155 4.155 12 C 0.056 3.944 13 H 0.057 0.943 14 C -0.214 4.214 15 N -0.371 5.371 16 C -0.357 4.357 17 H 0.085 0.915 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.791 3.209 21 H -0.225 1.225 22 H -0.220 1.220 23 H -0.193 1.193 24 C -0.028 4.028 25 C -0.148 4.148 26 N -0.134 5.134 27 H 0.269 0.731 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.101 0.899 31 H 0.177 0.823 32 H 0.243 0.757 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.096 0.904 39 H 0.048 0.952 40 H 0.062 0.938 41 H 0.201 0.799 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.856 -5.183 -13.835 23.954 hybrid contribution 0.560 -0.726 1.167 1.484 sum -18.295 -5.909 -12.668 23.024 Atomic orbital electron populations 1.20439 0.84710 1.04829 1.03713 1.20772 0.95056 0.85254 1.07989 1.22019 0.89621 0.99294 1.09705 1.20291 0.93404 0.93192 1.20341 1.17838 0.87956 0.82620 0.74742 1.90708 1.30632 1.73278 1.53282 1.45597 1.09737 1.05146 1.74676 1.20793 0.86939 0.91516 0.96450 0.93767 1.22068 1.02079 1.01163 0.95429 1.22065 1.03460 0.94966 0.95002 1.20507 0.89573 0.93707 0.90630 0.94272 1.22290 1.00762 0.98194 1.00180 1.42581 1.04234 1.65086 1.25184 1.19492 0.92188 1.24910 0.99061 0.91508 1.25420 0.95270 1.03724 1.02598 1.69803 0.97538 1.53140 1.41582 0.85310 0.77016 0.78275 0.80299 1.22492 1.21965 1.19265 1.20393 0.86168 0.94127 1.02067 1.20482 0.93823 0.97360 1.03101 1.41474 1.04141 1.09791 1.58034 0.73101 0.90219 0.88725 0.89914 0.82276 0.75673 0.94581 0.90125 0.91153 0.90525 0.87667 0.90448 0.95222 0.93826 0.79851 0.94403 0.91345 0.88557 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.41 71.23 0.74 -0.04 16 2 C 0.02 0.35 7.13 40.98 0.29 0.65 16 3 C -0.18 -4.40 10.45 23.62 0.25 -4.15 16 4 C -0.26 -8.43 6.29 -19.04 -0.12 -8.55 16 5 C 0.58 22.63 7.77 86.61 0.67 23.30 16 6 O -0.60 -28.57 14.47 -4.13 -0.06 -28.63 16 7 N -0.70 -23.28 4.44 -445.95 -1.98 -25.26 16 8 C 0.15 5.23 2.52 44.99 0.11 5.35 16 9 H 0.04 2.13 7.05 -2.39 -0.02 2.11 16 10 C -0.15 -4.37 9.48 71.98 0.68 -3.69 16 11 C -0.12 -3.59 4.29 30.60 0.13 -3.46 16 12 C 0.16 6.38 2.84 44.99 0.13 6.51 16 13 H 0.04 1.59 7.56 -2.39 -0.02 1.57 16 14 C -0.15 -5.29 9.49 71.98 0.68 -4.60 16 15 N -0.73 -38.05 4.49 -322.95 -1.45 -39.50 16 16 C -0.22 -13.13 9.93 84.03 0.83 -12.29 16 17 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 18 C -0.08 -4.78 5.50 84.86 0.47 -4.31 16 19 N -0.97 -62.85 13.06 21.65 0.28 -62.56 16 20 Si 0.96 49.42 29.55 68.60 2.03 51.45 16 21 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 22 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 23 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 24 C 0.09 2.53 7.18 41.79 0.30 2.83 16 25 C -0.09 -2.39 9.88 71.24 0.70 -1.69 16 26 N -0.54 -10.27 5.90 -171.06 -1.01 -11.28 16 27 H 0.43 4.92 8.96 -92.71 -0.83 4.09 16 28 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.16 3.07 7.70 -2.91 -0.02 3.05 16 32 H 0.41 10.71 7.73 -92.71 -0.72 10.00 16 33 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.37 20.93 7.80 -92.71 -0.72 20.20 16 42 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 43 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.07 2.41 6.46 -2.39 -0.02 2.40 16 Total: -1.00 -81.81 371.64 2.42 -79.39 By element: Atomic # 1 Polarization: 41.82 SS G_CDS: -1.27 Total: 40.55 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 5.88 Total: -4.15 kcal Atomic # 7 Polarization: -134.44 SS G_CDS: -4.16 Total: -138.60 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.06 Total: -28.63 kcal Atomic # 14 Polarization: 49.42 SS G_CDS: 2.03 Total: 51.45 kcal Total: -81.81 2.42 -79.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135561823.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.585 kcal (2) G-P(sol) polarization free energy of solvation -81.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds