Wall clock time and date at job start Tue Mar 31 2020 07:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34492 * 125.57263 * 2 1 4 4 C 1.46688 * 106.33366 * 180.14782 * 3 2 1 5 5 C 1.47257 * 126.94037 * 179.83296 * 4 3 2 6 6 O 1.21629 * 119.99730 * 179.68800 * 5 4 3 7 7 N 1.34775 * 120.00305 * 359.67478 * 5 4 3 8 8 C 1.46498 * 120.00097 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47313 * 325.00032 * 8 7 5 10 10 C 1.53000 * 109.47241 * 85.00441 * 8 7 5 11 11 C 1.53004 * 109.47042 * 205.00659 * 8 7 5 12 12 C 1.52995 * 109.47243 * 65.00151 * 11 8 7 13 13 H 1.08994 * 109.47294 * 54.99887 * 12 11 8 14 14 C 1.53006 * 109.47104 * 175.00526 * 12 11 8 15 15 N 1.46505 * 109.47024 * 294.99928 * 12 11 8 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 12 11 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 12 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 C 1.36769 * 106.11434 * 359.56242 * 4 3 2 25 25 C 1.50701 * 125.80158 * 180.28070 * 24 4 3 26 26 N 1.34657 * 108.39753 * 0.26789 * 24 4 3 27 27 H 0.97001 * 124.84695 * 180.02562 * 26 24 4 28 28 H 1.08997 * 109.46971 * 270.31157 * 1 2 3 29 29 H 1.08991 * 109.47320 * 30.31452 * 1 2 3 30 30 H 1.09000 * 109.46799 * 150.31521 * 1 2 3 31 31 H 1.08003 * 126.83091 * 359.97146 * 3 2 1 32 32 H 0.96996 * 119.99873 * 0.02562 * 7 5 4 33 33 H 1.08991 * 109.47284 * 179.97438 * 10 8 7 34 34 H 1.09002 * 109.46964 * 300.00497 * 10 8 7 35 35 H 1.09005 * 109.46977 * 59.99936 * 10 8 7 36 36 H 1.09003 * 109.47011 * 304.99749 * 11 8 7 37 37 H 1.09002 * 109.46836 * 185.00246 * 11 8 7 38 38 H 1.08991 * 109.47054 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.46242 * 299.99533 * 14 12 11 40 40 H 1.08994 * 109.47567 * 59.99528 * 14 12 11 41 41 H 0.97000 * 119.99792 * 334.99921 * 15 12 11 42 42 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.46982 * 90.00510 * 25 24 4 44 44 H 1.08995 * 109.47266 * 210.00553 * 25 24 4 45 45 H 1.08999 * 109.46844 * 330.00904 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6106 -0.0036 5 6 4.8977 1.4302 -0.0084 6 8 5.9892 0.8936 -0.0053 7 7 4.8079 2.7749 -0.0164 8 6 6.0250 3.5903 -0.0217 9 1 6.7957 3.0967 0.5704 10 6 6.5182 3.7612 -1.4600 11 6 5.7213 4.9639 0.5799 12 6 5.3482 4.8034 2.0550 13 1 6.1424 4.2674 2.5744 14 6 5.1659 6.1843 2.6881 15 7 4.0976 4.0479 2.1629 16 6 3.8196 3.3433 3.3036 17 1 4.5221 3.3448 4.1240 18 6 2.6321 2.6321 3.4081 19 7 1.7758 2.6307 2.4086 20 14 2.2493 1.6772 4.9673 21 1 2.2119 2.6098 6.1223 22 1 0.9308 1.0087 4.8272 23 1 3.3015 0.6535 5.1916 24 6 3.5998 -0.7551 0.0045 25 6 4.7722 -1.7019 0.0105 26 7 2.3008 -1.1098 0.0066 27 1 1.9758 -2.0237 0.0123 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8871 -0.5187 30 1 -0.3633 -0.8928 -0.5089 31 1 1.9629 2.1234 -0.0004 32 1 3.9375 3.2029 -0.0187 33 1 7.4234 4.3682 -1.4640 34 1 6.7345 2.7826 -1.8886 35 1 5.7475 4.2549 -2.0521 36 1 4.8901 5.4203 0.0424 37 1 6.6021 5.6004 0.4951 38 1 4.9005 6.0700 3.7390 39 1 6.0965 6.7463 2.6078 40 1 4.3717 6.7203 2.1687 41 1 3.4665 4.0469 1.4262 42 1 0.9461 2.1335 2.4815 43 1 5.0545 -1.9241 1.0397 44 1 4.4959 -2.6255 -0.4980 45 1 5.6142 -1.2408 -0.5057 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135561829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:10 Heat of formation + Delta-G solvation = 8.048687 kcal Electronic energy + Delta-G solvation = -25352.863173 eV Core-core repulsion = 21985.037503 eV Total energy + Delta-G solvation = -3367.825671 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.57178 -38.62624 -36.47771 -33.95528 -32.25645 -31.90310 -30.88283 -29.67112 -28.62701 -28.30720 -26.20819 -24.30784 -23.51461 -22.17632 -20.21064 -20.05224 -19.50871 -18.58607 -17.01546 -16.36533 -15.46242 -15.22734 -14.64806 -14.55227 -13.84949 -13.65989 -13.56908 -13.15890 -12.94044 -12.84251 -12.62919 -12.55730 -12.48743 -12.01773 -11.96702 -11.71579 -11.66349 -11.57875 -11.57056 -11.52597 -10.89204 -10.77977 -10.73399 -10.61927 -10.22847 -10.16857 -9.78358 -9.53399 -8.90841 -8.81237 -8.14277 -7.88207 -7.23707 -6.75891 -5.65587 -2.88058 2.52133 3.26248 3.49499 3.52051 3.56045 3.70962 4.24649 4.55294 4.70027 5.25197 5.41244 5.45953 5.57891 5.60017 5.64303 5.67942 5.71404 5.83057 5.94912 6.00217 6.03148 6.05265 6.13506 6.14886 6.26992 6.31662 6.35857 6.38884 6.42800 6.49264 6.56189 6.69653 6.73153 6.74166 6.96351 7.09853 7.16590 7.48690 7.63496 7.74962 7.83352 8.11623 8.52818 8.60690 9.31664 9.65916 10.19693 10.55942 11.56647 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.008429 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.752549 B = 3320.940526 C = 4890.497805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.023 4.023 3 C -0.088 4.088 4 C -0.219 4.219 5 C 0.604 3.396 6 O -0.580 6.580 7 N -0.694 5.694 8 C 0.151 3.849 9 H 0.080 0.920 10 C -0.161 4.161 11 C -0.133 4.133 12 C 0.170 3.830 13 H 0.046 0.954 14 C -0.163 4.163 15 N -0.713 5.713 16 C -0.231 4.231 17 H 0.062 0.938 18 C -0.001 4.001 19 N -0.917 5.917 20 Si 0.896 3.104 21 H -0.292 1.292 22 H -0.295 1.295 23 H -0.292 1.292 24 C 0.082 3.918 25 C -0.086 4.086 26 N -0.556 5.556 27 H 0.403 0.597 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.154 0.846 32 H 0.403 0.597 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.044 0.956 41 H 0.378 0.622 42 H 0.252 0.748 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.292 -2.213 -8.593 8.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.130 4.130 3 C -0.112 4.112 4 C -0.229 4.229 5 C 0.394 3.606 6 O -0.463 6.463 7 N -0.345 5.345 8 C 0.046 3.954 9 H 0.098 0.902 10 C -0.220 4.220 11 C -0.172 4.172 12 C 0.060 3.940 13 H 0.064 0.936 14 C -0.223 4.223 15 N -0.356 5.356 16 C -0.362 4.362 17 H 0.080 0.920 18 C -0.197 4.197 19 N -0.565 5.565 20 Si 0.728 3.272 21 H -0.219 1.219 22 H -0.221 1.221 23 H -0.219 1.219 24 C -0.035 4.035 25 C -0.143 4.143 26 N -0.153 5.153 27 H 0.238 0.762 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.172 0.828 32 H 0.241 0.759 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.213 0.787 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.070 0.930 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.952 -2.730 -8.426 9.070 hybrid contribution -1.168 -0.752 1.081 1.760 sum 0.785 -3.481 -7.345 8.166 Atomic orbital electron populations 1.20136 0.88740 1.01766 1.02164 1.20009 0.92976 0.86042 1.13940 1.21892 0.89903 0.98091 1.01325 1.20056 0.93553 0.91708 1.17629 1.17221 0.87380 0.81802 0.74172 1.90614 1.29114 1.72893 1.53694 1.45701 1.09141 1.05482 1.74159 1.20726 0.88351 0.91193 0.95123 0.90168 1.22207 1.00527 1.01730 0.97494 1.22198 1.01330 0.95706 0.97924 1.20256 0.90508 0.91317 0.91930 0.93633 1.22427 0.99153 0.99044 1.01679 1.42372 1.18261 1.56889 1.18070 1.19030 1.01473 1.22048 0.93673 0.92004 1.24452 0.97327 1.00777 0.97158 1.69501 1.10579 1.46181 1.30248 0.86443 0.76874 0.80039 0.83809 1.21875 1.22098 1.21878 1.20077 0.84553 0.94404 1.04449 1.20438 0.95137 0.95943 1.02788 1.41334 1.05289 1.08127 1.60508 0.76230 0.91627 0.90541 0.93256 0.82836 0.75928 0.92459 0.92456 0.92985 0.91907 0.91109 0.92996 0.94757 0.93689 0.78729 0.93784 0.91244 0.92964 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.41 36.00 0.37 -0.62 16 2 C -0.02 -0.40 7.13 -81.86 -0.58 -0.98 16 3 C -0.09 -1.76 9.04 -37.50 -0.34 -2.10 16 4 C -0.22 -4.56 6.29 -103.35 -0.65 -5.21 16 5 C 0.60 13.09 7.77 -12.60 -0.10 12.99 16 6 O -0.58 -13.46 14.47 5.25 0.08 -13.39 16 7 N -0.69 -13.47 3.80 -54.93 -0.21 -13.67 16 8 C 0.15 2.61 2.57 -67.93 -0.17 2.43 16 9 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 10 C -0.16 -2.33 9.48 37.16 0.35 -1.98 16 11 C -0.13 -2.10 4.43 -26.73 -0.12 -2.22 16 12 C 0.17 3.28 2.89 -67.93 -0.20 3.08 16 13 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 14 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 15 N -0.71 -16.40 3.84 -53.42 -0.21 -16.61 16 16 C -0.23 -6.14 9.93 -15.06 -0.15 -6.29 16 17 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 18 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 19 N -0.92 -24.04 10.81 55.49 0.60 -23.44 16 20 Si 0.90 22.49 29.55 -169.99 -5.02 17.47 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 24 C 0.08 1.52 7.17 -81.88 -0.59 0.93 16 25 C -0.09 -1.35 9.88 36.01 0.36 -1.00 16 26 N -0.56 -8.92 5.90 -5.42 -0.03 -8.95 16 27 H 0.40 4.99 8.96 -40.82 -0.37 4.62 16 28 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.15 3.23 6.94 -52.48 -0.36 2.86 16 32 H 0.40 7.94 5.63 -40.82 -0.23 7.71 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.38 8.85 5.70 -40.82 -0.23 8.62 16 42 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.10 1.68 6.46 -51.93 -0.34 1.34 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -29.80 363.03 -8.26 -38.07 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: -7.38 Total: 18.66 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: -1.56 Total: -3.61 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.15 Total: -62.67 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: 0.08 Total: -13.39 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.80 -8.26 -38.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135561829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.115 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds