Wall clock time and date at job start Tue Mar 31 2020 07:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34492 * 125.57263 * 2 1 4 4 C 1.46688 * 106.33366 * 180.14782 * 3 2 1 5 5 C 1.47257 * 126.94037 * 179.83296 * 4 3 2 6 6 O 1.21629 * 119.99730 * 179.68800 * 5 4 3 7 7 N 1.34775 * 120.00305 * 359.67478 * 5 4 3 8 8 C 1.46498 * 120.00097 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47313 * 325.00032 * 8 7 5 10 10 C 1.53000 * 109.47241 * 85.00441 * 8 7 5 11 11 C 1.53004 * 109.47042 * 205.00659 * 8 7 5 12 12 C 1.52995 * 109.47243 * 65.00151 * 11 8 7 13 13 H 1.08994 * 109.47294 * 54.99887 * 12 11 8 14 14 C 1.53006 * 109.47104 * 175.00526 * 12 11 8 15 15 N 1.46505 * 109.47024 * 294.99928 * 12 11 8 16 16 C 1.36931 * 119.99788 * 155.00126 * 15 12 11 17 17 H 1.08002 * 120.00438 * 0.02562 * 16 15 12 18 18 C 1.38817 * 119.99680 * 179.72358 * 16 15 12 19 19 N 1.31614 * 119.99888 * 0.27479 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.27671 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48490 * 109.47071 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 C 1.36769 * 106.11434 * 359.56242 * 4 3 2 25 25 C 1.50701 * 125.80158 * 180.28070 * 24 4 3 26 26 N 1.34657 * 108.39753 * 0.26789 * 24 4 3 27 27 H 0.97001 * 124.84695 * 180.02562 * 26 24 4 28 28 H 1.08997 * 109.46971 * 270.31157 * 1 2 3 29 29 H 1.08991 * 109.47320 * 30.31452 * 1 2 3 30 30 H 1.09000 * 109.46799 * 150.31521 * 1 2 3 31 31 H 1.08003 * 126.83091 * 359.97146 * 3 2 1 32 32 H 0.96996 * 119.99873 * 0.02562 * 7 5 4 33 33 H 1.08991 * 109.47284 * 179.97438 * 10 8 7 34 34 H 1.09002 * 109.46964 * 300.00497 * 10 8 7 35 35 H 1.09005 * 109.46977 * 59.99936 * 10 8 7 36 36 H 1.09003 * 109.47011 * 304.99749 * 11 8 7 37 37 H 1.09002 * 109.46836 * 185.00246 * 11 8 7 38 38 H 1.08991 * 109.47054 * 180.02562 * 14 12 11 39 39 H 1.09004 * 109.46242 * 299.99533 * 14 12 11 40 40 H 1.08994 * 109.47567 * 59.99528 * 14 12 11 41 41 H 0.97000 * 119.99792 * 334.99921 * 15 12 11 42 42 H 0.97005 * 119.99715 * 179.97438 * 19 18 16 43 43 H 1.09007 * 109.46982 * 90.00510 * 25 24 4 44 44 H 1.08995 * 109.47266 * 210.00553 * 25 24 4 45 45 H 1.08999 * 109.46844 * 330.00904 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2894 1.0939 0.0000 4 6 3.6743 0.6106 -0.0036 5 6 4.8977 1.4302 -0.0084 6 8 5.9892 0.8936 -0.0053 7 7 4.8079 2.7749 -0.0164 8 6 6.0250 3.5903 -0.0217 9 1 6.7957 3.0967 0.5704 10 6 6.5182 3.7612 -1.4600 11 6 5.7213 4.9639 0.5799 12 6 5.3482 4.8034 2.0550 13 1 6.1424 4.2674 2.5744 14 6 5.1659 6.1843 2.6881 15 7 4.0976 4.0479 2.1629 16 6 3.8196 3.3433 3.3036 17 1 4.5221 3.3448 4.1240 18 6 2.6321 2.6321 3.4081 19 7 1.7758 2.6307 2.4086 20 14 2.2493 1.6772 4.9673 21 1 2.2119 2.6098 6.1223 22 1 0.9308 1.0087 4.8272 23 1 3.3015 0.6535 5.1916 24 6 3.5998 -0.7551 0.0045 25 6 4.7722 -1.7019 0.0105 26 7 2.3008 -1.1098 0.0066 27 1 1.9758 -2.0237 0.0123 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8871 -0.5187 30 1 -0.3633 -0.8928 -0.5089 31 1 1.9629 2.1234 -0.0004 32 1 3.9375 3.2029 -0.0187 33 1 7.4234 4.3682 -1.4640 34 1 6.7345 2.7826 -1.8886 35 1 5.7475 4.2549 -2.0521 36 1 4.8901 5.4203 0.0424 37 1 6.6021 5.6004 0.4951 38 1 4.9005 6.0700 3.7390 39 1 6.0965 6.7463 2.6078 40 1 4.3717 6.7203 2.1687 41 1 3.4665 4.0469 1.4262 42 1 0.9461 2.1335 2.4815 43 1 5.0545 -1.9241 1.0397 44 1 4.4959 -2.6255 -0.4980 45 1 5.6142 -1.2408 -0.5057 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135561829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:10 Heat of formation + Delta-G solvation = -9.763647 kcal Electronic energy + Delta-G solvation = -25353.635574 eV Core-core repulsion = 21985.037503 eV Total energy + Delta-G solvation = -3368.598072 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.98454 -40.16685 -38.08932 -35.62899 -33.97902 -33.28272 -32.43292 -31.17370 -30.05997 -29.80122 -27.54706 -25.70823 -25.44783 -23.60088 -21.65215 -21.63129 -20.93363 -20.11990 -18.97087 -17.79419 -16.96772 -16.71650 -16.45120 -16.00606 -15.53991 -15.39739 -15.08906 -14.63126 -14.31357 -14.23962 -14.06627 -13.94277 -13.88916 -13.51247 -13.31216 -13.23435 -13.08504 -12.87924 -12.84825 -12.81238 -12.75153 -12.55115 -12.23340 -12.14696 -12.11663 -11.65260 -11.49106 -11.34408 -10.78338 -10.52989 -9.72961 -9.35886 -8.67750 -8.62028 -7.70805 -4.90817 1.02654 1.44851 1.46906 1.50629 1.80207 2.38493 2.65510 2.78437 2.99319 3.61627 3.88013 4.08797 4.09517 4.22449 4.25390 4.40714 4.43742 4.56663 4.60190 4.62539 4.74111 4.76917 4.88076 4.88634 4.91536 4.95981 4.98880 5.12322 5.13804 5.18427 5.19269 5.21845 5.31157 5.42261 5.46907 5.63043 5.67379 5.71201 5.98832 6.17140 6.29172 6.50928 6.86548 7.01690 7.59307 7.70822 8.30224 8.58707 9.48699 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.008429 C = 0.005724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.752549 B = 3320.940526 C = 4890.497805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.016 4.016 3 C -0.113 4.113 4 C -0.259 4.259 5 C 0.591 3.409 6 O -0.608 6.608 7 N -0.689 5.689 8 C 0.147 3.853 9 H 0.052 0.948 10 C -0.149 4.149 11 C -0.119 4.119 12 C 0.162 3.838 13 H 0.023 0.977 14 C -0.152 4.152 15 N -0.715 5.715 16 C -0.240 4.240 17 H 0.045 0.955 18 C -0.036 4.036 19 N -0.913 5.913 20 Si 0.934 3.066 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.305 1.305 24 C 0.079 3.921 25 C -0.080 4.080 26 N -0.539 5.539 27 H 0.423 0.577 28 H 0.058 0.942 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.401 0.599 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.375 0.625 42 H 0.249 0.751 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -2.122 -9.653 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.124 4.124 3 C -0.137 4.137 4 C -0.269 4.269 5 C 0.382 3.618 6 O -0.493 6.493 7 N -0.339 5.339 8 C 0.042 3.958 9 H 0.070 0.930 10 C -0.208 4.208 11 C -0.157 4.157 12 C 0.054 3.946 13 H 0.041 0.959 14 C -0.212 4.212 15 N -0.359 5.359 16 C -0.373 4.373 17 H 0.064 0.936 18 C -0.232 4.232 19 N -0.561 5.561 20 Si 0.767 3.233 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.234 1.234 24 C -0.040 4.040 25 C -0.137 4.137 26 N -0.137 5.137 27 H 0.262 0.738 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.154 0.846 32 H 0.238 0.762 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.210 0.790 42 H 0.058 0.942 43 H 0.083 0.917 44 H 0.111 0.889 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.478 -2.619 -9.492 9.957 hybrid contribution -0.996 -0.784 1.422 1.905 sum 0.483 -3.403 -8.070 8.771 Atomic orbital electron populations 1.20203 0.86182 1.03816 1.02241 1.20454 0.94505 0.85707 1.11774 1.21761 0.90133 0.98161 1.03635 1.20297 0.93648 0.93077 1.19878 1.17554 0.87518 0.82600 0.74102 1.90577 1.29998 1.73434 1.55308 1.45751 1.09726 1.05122 1.73295 1.20886 0.86871 0.91280 0.96773 0.93013 1.22090 1.02097 1.01366 0.95211 1.22111 1.03233 0.95343 0.95002 1.20455 0.88276 0.91440 0.94451 0.95861 1.22262 1.00979 0.98100 0.99829 1.42380 1.19477 1.57125 1.16881 1.19066 1.01165 1.22620 0.94425 0.93643 1.24849 0.97813 1.01795 0.98704 1.69577 1.10257 1.46073 1.30212 0.85856 0.76091 0.78901 0.82428 1.21865 1.21927 1.23368 1.20429 0.86029 0.94193 1.03354 1.20411 0.93618 0.96936 1.02733 1.41291 1.04353 1.09015 1.59033 0.73812 0.92338 0.89953 0.89859 0.84558 0.76172 0.89644 0.94374 0.91565 0.90728 0.87511 0.95404 0.91385 0.93296 0.79045 0.94165 0.91704 0.88934 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.74 10.41 71.24 0.74 -1.00 16 2 C -0.02 -0.55 7.13 40.98 0.29 -0.26 16 3 C -0.11 -4.56 9.04 23.62 0.21 -4.35 16 4 C -0.26 -10.99 6.29 -19.04 -0.12 -11.11 16 5 C 0.59 26.49 7.77 86.61 0.67 27.16 16 6 O -0.61 -29.30 14.47 -4.12 -0.06 -29.36 16 7 N -0.69 -27.34 3.80 -445.96 -1.69 -29.03 16 8 C 0.15 5.00 2.57 44.99 0.12 5.12 16 9 H 0.05 2.07 7.58 -2.39 -0.02 2.05 16 10 C -0.15 -4.11 9.48 71.98 0.68 -3.42 16 11 C -0.12 -3.53 4.43 30.59 0.14 -3.40 16 12 C 0.16 6.20 2.89 44.99 0.13 6.33 16 13 H 0.02 0.99 8.08 -2.39 -0.02 0.97 16 14 C -0.15 -5.15 9.49 71.98 0.68 -4.46 16 15 N -0.72 -33.35 3.84 -322.93 -1.24 -34.59 16 16 C -0.24 -13.04 9.93 84.04 0.83 -12.21 16 17 H 0.05 2.57 7.83 -2.91 -0.02 2.55 16 18 C -0.04 -1.94 5.50 84.86 0.47 -1.47 16 19 N -0.91 -48.22 10.81 21.65 0.23 -47.98 16 20 Si 0.93 46.60 29.55 68.60 2.03 48.63 16 21 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 22 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.31 -15.83 7.11 99.48 0.71 -15.13 16 24 C 0.08 2.86 7.17 41.78 0.30 3.16 16 25 C -0.08 -2.46 9.88 71.24 0.70 -1.75 16 26 N -0.54 -16.37 5.90 -171.07 -1.01 -17.38 16 27 H 0.42 9.26 8.96 -92.71 -0.83 8.43 16 28 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.14 5.89 6.94 -2.91 -0.02 5.87 16 32 H 0.40 16.16 5.63 -92.71 -0.52 15.63 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 36 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.11 2.46 8.14 -2.39 -0.02 2.45 16 38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.37 17.77 5.70 -92.71 -0.53 17.25 16 42 H 0.25 13.07 8.31 -92.70 -0.77 12.30 16 43 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 44 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.08 2.76 6.46 -2.39 -0.02 2.75 16 Total: -1.00 -66.46 363.03 3.23 -63.23 By element: Atomic # 1 Polarization: 49.00 SS G_CDS: -0.88 Total: 48.12 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.85 Total: -1.65 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -3.71 Total: -128.98 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.06 Total: -29.36 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -66.46 3.23 -63.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135561829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.468 kcal (2) G-P(sol) polarization free energy of solvation -66.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds