Wall clock time and date at job start Tue Mar 31 2020 07:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46984 * 123.85289 * 3 2 1 5 5 N 1.46508 * 109.47148 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99739 * 270.00088 * 5 4 3 7 7 C 1.50702 * 109.47166 * 269.99616 * 6 5 4 8 8 H 1.08004 * 120.00038 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00177 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99707 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99956 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47002 * 89.99535 * 11 9 7 13 13 H 1.48498 * 109.47080 * 209.99634 * 11 9 7 14 14 H 1.48497 * 109.47155 * 329.99524 * 11 9 7 15 15 C 1.34770 * 119.99784 * 89.99948 * 5 4 3 16 16 O 1.21289 * 119.99871 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00595 * 359.97438 * 15 5 4 18 18 C 1.53004 * 109.47487 * 179.97438 * 17 15 5 19 19 N 1.46898 * 109.46850 * 180.02562 * 18 17 15 20 20 C 1.46845 * 111.00565 * 45.79157 * 19 18 17 21 21 C 1.53034 * 109.52676 * 185.84030 * 20 19 18 22 22 C 1.53126 * 109.27454 * 300.81918 * 21 20 19 23 23 C 1.53119 * 109.16048 * 57.65518 * 22 21 20 24 24 C 1.46850 * 110.99813 * 170.00223 * 19 18 17 25 25 H 1.09005 * 109.47651 * 3.85245 * 3 2 1 26 26 H 1.08998 * 109.47311 * 243.85090 * 3 2 1 27 27 H 1.09000 * 109.47457 * 60.00055 * 4 3 2 28 28 H 1.09003 * 109.47021 * 299.99569 * 4 3 2 29 29 H 1.08997 * 109.47168 * 30.00091 * 6 5 4 30 30 H 1.09003 * 109.47111 * 150.00291 * 6 5 4 31 31 H 0.97006 * 119.99674 * 180.02562 * 10 9 7 32 32 H 1.09006 * 109.46822 * 60.00018 * 17 15 5 33 33 H 1.08999 * 109.46918 * 300.00498 * 17 15 5 34 34 H 1.08995 * 109.46637 * 59.99964 * 18 17 15 35 35 H 1.09001 * 109.46762 * 299.99921 * 18 17 15 36 36 H 1.08995 * 109.46315 * 65.81881 * 20 19 18 37 37 H 1.09005 * 109.45975 * 305.85394 * 20 19 18 38 38 H 1.08997 * 109.50792 * 180.88024 * 21 20 19 39 39 H 1.09006 * 109.50471 * 60.75677 * 21 20 19 40 40 H 1.08999 * 109.52028 * 177.55723 * 22 21 20 41 41 H 1.08993 * 109.52259 * 297.74866 * 22 21 20 42 42 H 1.09004 * 109.50440 * 62.28501 * 23 22 21 43 43 H 1.09003 * 109.50154 * 182.40625 * 23 22 21 44 44 H 1.09005 * 109.46186 * 54.13967 * 24 19 18 45 45 H 1.08998 * 109.46012 * 294.17361 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8045 -1.1980 5 7 4.5827 0.8057 -1.1977 6 6 5.3141 1.8600 -0.4909 7 6 5.5646 3.0128 -1.4286 8 1 5.2137 2.9651 -2.4489 9 6 6.2409 4.1290 -0.9838 10 7 6.4590 5.1352 -1.8021 11 14 6.8472 4.2119 0.7811 12 1 8.2212 3.6539 0.8591 13 1 6.8608 5.6261 1.2339 14 1 5.9417 3.4216 1.6533 15 6 5.2574 -0.1632 -1.8476 16 8 6.4703 -0.1620 -1.8477 17 6 4.5050 -1.2481 -2.5741 18 6 5.5002 -2.2128 -3.2222 19 7 4.7667 -3.2699 -3.9309 20 6 3.6750 -2.7052 -4.7344 21 6 2.8457 -3.8399 -5.3400 22 6 3.7485 -4.7146 -6.2145 23 6 4.9040 -5.2510 -5.3651 24 6 5.6735 -4.0754 -4.7588 25 1 2.9719 -1.0245 -0.0690 26 1 2.9712 0.4537 0.9225 27 1 2.7538 1.8297 -1.1290 28 1 2.7545 0.3514 -2.1205 29 1 4.7246 2.2042 0.3588 30 1 6.2668 1.4664 -0.1365 31 1 6.9351 5.9203 -1.4892 32 1 3.8778 -0.8012 -3.3455 33 1 3.8790 -1.7922 -1.8669 34 1 6.1277 -2.6596 -2.4511 35 1 6.1259 -1.6683 -3.9295 36 1 4.0918 -2.0931 -5.5341 37 1 3.0382 -2.0888 -4.0997 38 1 2.0449 -3.4205 -5.9490 39 1 2.4173 -4.4444 -4.5405 40 1 3.1715 -5.5490 -6.6132 41 1 4.1462 -4.1197 -7.0366 42 1 4.5079 -5.8777 -4.5660 43 1 5.5738 -5.8397 -5.9921 44 1 6.4884 -4.4542 -4.1418 45 1 6.0809 -3.4569 -5.5584 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142914138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:36 Heat of formation + Delta-G solvation = -14.064018 kcal Electronic energy + Delta-G solvation = -23775.782166 eV Core-core repulsion = 20406.997617 eV Total energy + Delta-G solvation = -3368.784550 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.75554 -38.79713 -36.91844 -35.38806 -34.29537 -32.81894 -31.19732 -31.02539 -30.15158 -27.85611 -25.15270 -24.06489 -23.24555 -22.74347 -21.12802 -19.80262 -18.46813 -17.74423 -17.01200 -16.81881 -15.81741 -15.52797 -15.48127 -14.89798 -14.70005 -14.52912 -14.41761 -13.92086 -13.73291 -13.61966 -13.31252 -12.98278 -12.62991 -12.62258 -12.49380 -12.27738 -12.13097 -11.95177 -11.67194 -11.46839 -11.38109 -11.24694 -11.06866 -10.89668 -10.76910 -10.57942 -10.50260 -10.38112 -10.21799 -9.61038 -9.12047 -8.63824 -8.36824 -7.92275 -6.13457 -4.13092 2.68219 2.77220 3.21587 3.25421 3.30799 3.33198 3.47867 3.82365 4.19906 4.34893 4.63212 4.66687 4.75298 4.91328 4.96128 5.01731 5.08024 5.15047 5.16736 5.22291 5.29931 5.35211 5.40481 5.46851 5.55520 5.59546 5.71874 5.73945 5.77130 5.78244 5.93279 5.97442 6.01381 6.02746 6.11757 6.20184 6.58324 6.85589 7.00597 7.02793 7.18510 7.52998 7.54753 8.07370 8.40267 8.81988 8.90628 9.46157 10.99828 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.004039 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.343457 B = 6929.936580 C = 8228.072829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.216 3.784 3 C -0.051 4.051 4 C 0.118 3.882 5 N -0.593 5.593 6 C 0.214 3.786 7 C -0.532 4.532 8 H 0.075 0.925 9 C 0.073 3.927 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.273 1.273 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.511 3.489 16 O -0.534 6.534 17 C -0.146 4.146 18 C 0.071 3.929 19 N -0.539 5.539 20 C 0.044 3.956 21 C -0.117 4.117 22 C -0.122 4.122 23 C -0.116 4.116 24 C 0.055 3.945 25 H 0.109 0.891 26 H 0.115 0.885 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.265 0.735 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.033 0.967 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 -18.399 -3.460 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.102 4.102 3 C -0.092 4.092 4 C -0.008 4.008 5 N -0.324 5.324 6 C 0.094 3.906 7 C -0.570 4.570 8 H 0.093 0.907 9 C -0.130 4.130 10 N -0.534 5.534 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.298 3.702 16 O -0.410 6.410 17 C -0.186 4.186 18 C -0.056 4.056 19 N -0.264 5.264 20 C -0.084 4.084 21 C -0.155 4.155 22 C -0.160 4.160 23 C -0.154 4.154 24 C -0.073 4.073 25 H 0.127 0.873 26 H 0.133 0.867 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.294 -18.499 -3.114 20.127 hybrid contribution 1.118 0.889 0.238 1.448 sum -6.176 -17.610 -2.876 18.882 Atomic orbital electron populations 1.81218 1.13013 1.09037 1.08753 1.29056 0.95059 0.92955 0.93120 1.19894 0.81487 1.04355 1.03499 1.21320 0.81759 1.01810 0.95932 1.47880 1.04942 1.26966 1.52622 1.19716 0.92555 0.85781 0.92549 1.21310 1.37284 0.99264 0.99147 0.90733 1.24863 0.95208 0.95395 0.97518 1.69897 1.41317 1.06758 1.35466 0.86860 0.80157 0.77479 0.85236 1.19903 1.21122 1.18955 1.20342 0.88060 0.82405 0.79423 1.90694 1.13931 1.75846 1.60551 1.21885 0.99604 0.96163 1.00954 1.21829 0.94829 0.91003 0.97965 1.62040 1.11801 1.23368 1.29210 1.22250 0.93802 0.96316 0.96001 1.21590 0.97565 0.97168 0.99129 1.21588 0.97065 0.99348 0.98004 1.21578 0.97240 0.97346 0.99195 1.22067 0.94878 0.94830 0.95511 0.87342 0.86729 0.88615 0.90320 0.95017 0.94267 0.92514 0.89012 0.88586 0.89746 0.93784 0.94829 0.90043 0.91709 0.91143 0.92030 0.92360 0.91140 0.91758 0.90669 0.94861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.31 18.54 42.16 0.78 -5.53 16 2 C 0.22 2.48 15.43 -20.76 -0.32 2.16 16 3 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 4 C 0.12 1.49 5.17 -4.04 -0.02 1.47 16 5 N -0.59 -10.32 2.46 -175.05 -0.43 -10.75 16 6 C 0.21 4.69 4.23 -5.19 -0.02 4.67 16 7 C -0.53 -14.36 9.94 -34.44 -0.34 -14.70 16 8 H 0.07 2.22 8.06 -52.48 -0.42 1.80 16 9 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 10 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 11 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 12 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 14 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 15 C 0.51 8.98 7.67 -10.99 -0.08 8.90 16 16 O -0.53 -11.86 15.56 5.55 0.09 -11.77 16 17 C -0.15 -1.82 3.50 -27.88 -0.10 -1.92 16 18 C 0.07 0.92 4.56 -3.82 -0.02 0.91 16 19 N -0.54 -5.95 4.81 -234.67 -1.13 -7.08 16 20 C 0.04 0.44 4.85 -3.84 -0.02 0.42 16 21 C -0.12 -0.99 6.09 -26.65 -0.16 -1.16 16 22 C -0.12 -0.98 6.00 -26.60 -0.16 -1.14 16 23 C -0.12 -0.96 6.09 -26.65 -0.16 -1.12 16 24 C 0.06 0.55 5.42 -3.83 -0.02 0.53 16 25 H 0.11 0.83 7.22 -51.93 -0.37 0.46 16 26 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.10 1.32 8.07 -51.93 -0.42 0.90 16 28 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 29 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 30 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 32 H 0.09 1.05 5.47 -51.93 -0.28 0.77 16 33 H 0.10 0.96 7.18 -51.93 -0.37 0.59 16 34 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 35 H 0.04 0.65 8.04 -51.93 -0.42 0.24 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.77 5.81 -51.93 -0.30 0.47 16 38 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 45 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -33.23 362.08 -8.30 -41.53 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.47 Total: -1.99 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -1.70 Total: 0.30 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.00 Total: -49.44 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.23 -8.30 -41.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142914138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.462 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds