Wall clock time and date at job start Tue Mar 31 2020 07:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46984 * 123.85289 * 3 2 1 5 5 N 1.46508 * 109.47148 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99739 * 270.00088 * 5 4 3 7 7 C 1.50702 * 109.47166 * 269.99616 * 6 5 4 8 8 H 1.08004 * 120.00038 * 0.02562 * 7 6 5 9 9 C 1.37877 * 120.00177 * 179.97438 * 7 6 5 10 10 N 1.31518 * 119.99707 * 180.02562 * 9 7 6 11 11 Si 1.86795 * 119.99956 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47002 * 89.99535 * 11 9 7 13 13 H 1.48498 * 109.47080 * 209.99634 * 11 9 7 14 14 H 1.48497 * 109.47155 * 329.99524 * 11 9 7 15 15 C 1.34770 * 119.99784 * 89.99948 * 5 4 3 16 16 O 1.21289 * 119.99871 * 179.97438 * 15 5 4 17 17 C 1.50697 * 120.00595 * 359.97438 * 15 5 4 18 18 C 1.53004 * 109.47487 * 179.97438 * 17 15 5 19 19 N 1.46898 * 109.46850 * 180.02562 * 18 17 15 20 20 C 1.46845 * 111.00565 * 45.79157 * 19 18 17 21 21 C 1.53034 * 109.52676 * 185.84030 * 20 19 18 22 22 C 1.53126 * 109.27454 * 300.81918 * 21 20 19 23 23 C 1.53119 * 109.16048 * 57.65518 * 22 21 20 24 24 C 1.46850 * 110.99813 * 170.00223 * 19 18 17 25 25 H 1.09005 * 109.47651 * 3.85245 * 3 2 1 26 26 H 1.08998 * 109.47311 * 243.85090 * 3 2 1 27 27 H 1.09000 * 109.47457 * 60.00055 * 4 3 2 28 28 H 1.09003 * 109.47021 * 299.99569 * 4 3 2 29 29 H 1.08997 * 109.47168 * 30.00091 * 6 5 4 30 30 H 1.09003 * 109.47111 * 150.00291 * 6 5 4 31 31 H 0.97006 * 119.99674 * 180.02562 * 10 9 7 32 32 H 1.09006 * 109.46822 * 60.00018 * 17 15 5 33 33 H 1.08999 * 109.46918 * 300.00498 * 17 15 5 34 34 H 1.08995 * 109.46637 * 59.99964 * 18 17 15 35 35 H 1.09001 * 109.46762 * 299.99921 * 18 17 15 36 36 H 1.08995 * 109.46315 * 65.81881 * 20 19 18 37 37 H 1.09005 * 109.45975 * 305.85394 * 20 19 18 38 38 H 1.08997 * 109.50792 * 180.88024 * 21 20 19 39 39 H 1.09006 * 109.50471 * 60.75677 * 21 20 19 40 40 H 1.08999 * 109.52028 * 177.55723 * 22 21 20 41 41 H 1.08993 * 109.52259 * 297.74866 * 22 21 20 42 42 H 1.09004 * 109.50440 * 62.28501 * 23 22 21 43 43 H 1.09003 * 109.50154 * 182.40625 * 23 22 21 44 44 H 1.09005 * 109.46186 * 54.13967 * 24 19 18 45 45 H 1.08998 * 109.46012 * 294.17361 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8045 -1.1980 5 7 4.5827 0.8057 -1.1977 6 6 5.3141 1.8600 -0.4909 7 6 5.5646 3.0128 -1.4286 8 1 5.2137 2.9651 -2.4489 9 6 6.2409 4.1290 -0.9838 10 7 6.4590 5.1352 -1.8021 11 14 6.8472 4.2119 0.7811 12 1 8.2212 3.6539 0.8591 13 1 6.8608 5.6261 1.2339 14 1 5.9417 3.4216 1.6533 15 6 5.2574 -0.1632 -1.8476 16 8 6.4703 -0.1620 -1.8477 17 6 4.5050 -1.2481 -2.5741 18 6 5.5002 -2.2128 -3.2222 19 7 4.7667 -3.2699 -3.9309 20 6 3.6750 -2.7052 -4.7344 21 6 2.8457 -3.8399 -5.3400 22 6 3.7485 -4.7146 -6.2145 23 6 4.9040 -5.2510 -5.3651 24 6 5.6735 -4.0754 -4.7588 25 1 2.9719 -1.0245 -0.0690 26 1 2.9712 0.4537 0.9225 27 1 2.7538 1.8297 -1.1290 28 1 2.7545 0.3514 -2.1205 29 1 4.7246 2.2042 0.3588 30 1 6.2668 1.4664 -0.1365 31 1 6.9351 5.9203 -1.4892 32 1 3.8778 -0.8012 -3.3455 33 1 3.8790 -1.7922 -1.8669 34 1 6.1277 -2.6596 -2.4511 35 1 6.1259 -1.6683 -3.9295 36 1 4.0918 -2.0931 -5.5341 37 1 3.0382 -2.0888 -4.0997 38 1 2.0449 -3.4205 -5.9490 39 1 2.4173 -4.4444 -4.5405 40 1 3.1715 -5.5490 -6.6132 41 1 4.1462 -4.1197 -7.0366 42 1 4.5079 -5.8777 -4.5660 43 1 5.5738 -5.8397 -5.9921 44 1 6.4884 -4.4542 -4.1418 45 1 6.0809 -3.4569 -5.5584 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142914138.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:36 Heat of formation + Delta-G solvation = -36.229561 kcal Electronic energy + Delta-G solvation = -23776.743336 eV Core-core repulsion = 20406.997617 eV Total energy + Delta-G solvation = -3369.745720 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.00379 -39.75133 -37.97877 -36.72804 -35.24178 -34.73026 -32.38929 -31.95106 -31.17502 -29.47311 -26.19062 -25.21546 -24.36866 -23.87581 -22.28295 -20.55684 -19.77734 -19.15879 -18.48816 -18.10497 -17.15459 -16.64372 -16.51163 -16.07164 -15.78569 -15.69861 -15.24877 -15.17473 -14.77265 -14.65244 -14.38526 -14.26365 -14.00354 -13.73952 -13.55003 -13.47253 -13.37439 -13.03296 -12.95084 -12.71035 -12.53208 -12.35064 -12.22664 -12.07190 -11.95820 -11.77804 -11.68721 -11.53580 -11.22241 -11.12081 -10.77259 -10.59462 -9.45250 -9.28607 -8.28171 -6.32842 1.38851 1.42964 1.50387 1.70574 1.86906 1.88536 2.26121 2.36670 2.90544 3.07863 3.23754 3.79752 3.86299 3.96629 4.01582 4.06472 4.13455 4.14045 4.22789 4.37435 4.51445 4.55793 4.57712 4.68028 4.71827 4.82740 4.84287 4.89746 4.96573 4.98820 5.01833 5.06336 5.11727 5.13296 5.16155 5.28084 5.33221 5.52625 5.53155 5.64824 6.08580 6.17314 6.29065 6.64114 6.69684 6.71733 7.27649 7.46105 8.88808 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.004039 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.343457 B = 6929.936580 C = 8228.072829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.245 3.755 3 C -0.037 4.037 4 C 0.112 3.888 5 N -0.595 5.595 6 C 0.221 3.779 7 C -0.534 4.534 8 H 0.028 0.972 9 C 0.008 3.992 10 N -0.950 5.950 11 Si 0.945 3.055 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.226 1.226 15 C 0.505 3.495 16 O -0.589 6.589 17 C -0.130 4.130 18 C 0.077 3.923 19 N -0.534 5.534 20 C 0.038 3.962 21 C -0.113 4.113 22 C -0.123 4.123 23 C -0.111 4.111 24 C 0.050 3.950 25 H 0.140 0.860 26 H 0.128 0.872 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.025 0.975 31 H 0.266 0.734 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.076 0.924 35 H 0.014 0.986 36 H 0.020 0.980 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.052 0.948 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.698 -20.614 -1.905 22.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.078 4.078 4 C -0.012 4.012 5 N -0.325 5.325 6 C 0.099 3.901 7 C -0.573 4.573 8 H 0.046 0.954 9 C -0.190 4.190 10 N -0.591 5.591 11 Si 0.768 3.232 12 H -0.204 1.204 13 H -0.209 1.209 14 H -0.148 1.148 15 C 0.294 3.706 16 O -0.469 6.469 17 C -0.170 4.170 18 C -0.051 4.051 19 N -0.259 5.259 20 C -0.089 4.089 21 C -0.151 4.151 22 C -0.161 4.161 23 C -0.148 4.148 24 C -0.078 4.078 25 H 0.158 0.842 26 H 0.146 0.854 27 H 0.101 0.899 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.152 0.848 34 H 0.094 0.906 35 H 0.032 0.968 36 H 0.039 0.961 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.093 0.907 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.912 -20.749 -1.562 22.636 hybrid contribution 1.614 1.579 -0.390 2.291 sum -7.299 -19.170 -1.952 20.605 Atomic orbital electron populations 1.81267 1.14553 1.10795 1.10287 1.29181 0.95001 0.91384 0.91647 1.19854 0.79963 1.05645 1.02347 1.21534 0.78747 1.02219 0.98742 1.47850 1.06826 1.25705 1.52082 1.19407 0.93194 0.85081 0.92405 1.21641 1.36373 1.01143 0.98108 0.95370 1.25876 0.95513 0.94938 1.02665 1.70070 1.43054 1.07795 1.38156 0.85756 0.79752 0.77964 0.79747 1.20444 1.20947 1.14841 1.21217 0.87680 0.83023 0.78668 1.90670 1.16584 1.77302 1.62386 1.21854 0.99156 0.94557 1.01427 1.21691 0.94809 0.91287 0.97332 1.62109 1.11778 1.22354 1.29612 1.22378 0.93656 0.97094 0.95810 1.21584 0.97560 0.96625 0.99347 1.21610 0.97019 0.99731 0.97731 1.21557 0.97387 0.96502 0.99381 1.22166 0.95211 0.95275 0.95165 0.84237 0.85419 0.89898 0.87948 0.92156 0.95713 0.92542 0.87543 0.84806 0.90560 0.96799 0.96125 0.89059 0.90623 0.90794 0.90558 0.92897 0.90906 0.90545 0.90724 0.95989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.87 18.54 20.00 0.37 -12.50 16 2 C 0.25 4.81 15.43 89.44 1.38 6.19 16 3 C -0.04 -0.56 6.03 28.79 0.17 -0.38 16 4 C 0.11 2.52 5.17 86.38 0.45 2.97 16 5 N -0.59 -19.79 2.46 -826.14 -2.03 -21.82 16 6 C 0.22 9.44 4.23 85.63 0.36 9.81 16 7 C -0.53 -29.47 9.94 25.60 0.25 -29.22 16 8 H 0.03 1.76 8.06 -2.91 -0.02 1.73 16 9 C 0.01 0.43 5.47 84.65 0.46 0.89 16 10 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 11 Si 0.94 42.17 27.47 68.60 1.88 44.05 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 14 H -0.23 -8.59 6.54 99.48 0.65 -7.93 16 15 C 0.51 17.32 7.67 87.66 0.67 17.99 16 16 O -0.59 -26.66 15.56 -3.06 -0.05 -26.71 16 17 C -0.13 -2.97 3.50 29.85 0.10 -2.86 16 18 C 0.08 1.95 4.56 86.30 0.39 2.34 16 19 N -0.53 -11.00 4.81 -896.37 -4.31 -15.31 16 20 C 0.04 0.70 4.85 86.33 0.42 1.11 16 21 C -0.11 -1.64 6.09 30.65 0.19 -1.46 16 22 C -0.12 -1.71 6.00 30.68 0.18 -1.53 16 23 C -0.11 -1.62 6.09 30.65 0.19 -1.44 16 24 C 0.05 0.96 5.42 86.32 0.47 1.43 16 25 H 0.14 1.34 7.22 -2.38 -0.02 1.33 16 26 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.08 2.12 8.07 -2.39 -0.02 2.10 16 28 H 0.10 1.83 6.44 -2.39 -0.02 1.81 16 29 H 0.06 2.25 7.13 -2.39 -0.02 2.24 16 30 H 0.02 1.15 6.85 -2.39 -0.02 1.13 16 31 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 32 H 0.11 2.17 5.47 -2.38 -0.01 2.15 16 33 H 0.13 2.07 7.18 -2.39 -0.02 2.05 16 34 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 35 H 0.01 0.43 8.04 -2.39 -0.02 0.41 16 36 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.09 1.45 5.81 -2.38 -0.01 1.44 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 1.43 8.12 -2.38 -0.02 1.41 16 45 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -76.89 362.08 2.77 -74.11 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.91 Total: 10.96 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.69 Total: 5.84 kcal Atomic # 7 Polarization: -102.59 SS G_CDS: -5.67 Total: -108.25 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.05 kcal Total: -76.89 2.77 -74.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142914138.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.883 kcal (2) G-P(sol) polarization free energy of solvation -76.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds