Wall clock time and date at job start Tue Mar 31 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46909 * 109.46632 * 2 1 4 4 C 1.46895 * 111.00229 * 57.85765 * 3 2 1 5 5 C 1.50704 * 109.46920 * 69.51952 * 4 3 2 6 6 H 1.07998 * 119.99993 * 356.18553 * 5 4 3 7 7 C 1.37875 * 120.00039 * 176.19125 * 5 4 3 8 8 N 1.31516 * 119.99746 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46997 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47052 * 119.99832 * 9 7 5 12 12 H 1.48502 * 109.47373 * 240.00236 * 9 7 5 13 13 C 1.46897 * 110.99916 * 293.90148 * 3 2 1 14 14 C 1.50700 * 109.47528 * 293.95741 * 13 3 2 15 15 C 1.38628 * 120.05328 * 269.72649 * 14 13 3 16 16 O 1.35892 * 120.03111 * 359.97438 * 15 14 13 17 17 C 1.42898 * 117.00316 * 180.02562 * 16 15 14 18 18 C 1.38774 * 119.94345 * 179.71970 * 15 14 13 19 19 C 1.38179 * 120.05543 * 0.55641 * 18 15 14 20 20 C 1.50696 * 119.94819 * 179.70437 * 19 18 15 21 21 C 1.38175 * 120.10709 * 359.71510 * 19 18 15 22 22 C 1.38633 * 120.05459 * 90.00033 * 14 13 3 23 23 O 1.35904 * 120.02947 * 0.02562 * 22 14 13 24 24 C 1.42901 * 117.00233 * 180.02562 * 23 22 14 25 25 H 1.09006 * 109.46562 * 172.80675 * 1 2 3 26 26 H 1.09001 * 109.46922 * 292.80090 * 1 2 3 27 27 H 1.08998 * 109.47540 * 52.80857 * 1 2 3 28 28 H 1.09000 * 109.47115 * 240.00148 * 2 1 3 29 29 H 1.08995 * 109.47183 * 119.99600 * 2 1 3 30 30 H 1.08991 * 109.47319 * 189.51526 * 4 3 2 31 31 H 1.09003 * 109.47313 * 309.52386 * 4 3 2 32 32 H 0.97001 * 119.99855 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46815 * 53.95866 * 13 3 2 34 34 H 1.09003 * 109.47023 * 173.95272 * 13 3 2 35 35 H 1.08997 * 109.47377 * 59.99774 * 17 16 15 36 36 H 1.09008 * 109.47012 * 179.97438 * 17 16 15 37 37 H 1.08999 * 109.47004 * 299.99209 * 17 16 15 38 38 H 1.07998 * 119.97569 * 180.27593 * 18 15 14 39 39 H 1.09007 * 109.46917 * 270.02198 * 20 19 18 40 40 H 1.09003 * 109.47429 * 30.01508 * 20 19 18 41 41 H 1.08996 * 109.47573 * 150.01874 * 20 19 18 42 42 H 1.07999 * 119.97173 * 179.97438 * 21 19 18 43 43 H 1.09007 * 109.46629 * 299.99984 * 24 23 22 44 44 H 1.09002 * 109.46943 * 59.99585 * 24 23 22 45 45 H 1.08996 * 109.47196 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5071 2.1246 1.1612 5 6 2.1505 1.5959 2.4173 6 1 2.8211 0.7510 2.3660 7 6 1.8828 2.1908 3.6319 8 7 1.0656 3.2194 3.6944 9 14 2.6796 1.5351 5.1890 10 1 3.5501 0.3803 4.8510 11 1 3.4980 2.6048 5.8145 12 1 1.6249 1.0992 6.1391 13 6 1.6711 2.0666 -1.2538 14 6 2.4126 1.4242 -2.3977 15 6 3.6631 1.8956 -2.7665 16 8 4.2215 2.9381 -2.0971 17 6 5.5119 3.3717 -2.5317 18 6 4.3464 1.2986 -3.8165 19 6 3.7765 0.2426 -4.5016 20 6 4.5179 -0.3996 -5.6457 21 6 2.5279 -0.2254 -4.1395 22 6 1.8430 0.3645 -3.0866 23 8 0.6147 -0.0959 -2.7313 24 6 0.0895 -1.1908 -3.4845 25 1 -0.3633 -1.0197 -0.1287 26 1 -0.3633 0.3983 0.9474 27 1 -0.3634 0.6212 -0.8186 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.7423 3.1831 1.0505 31 1 0.4265 1.9972 1.2251 32 1 0.8770 3.6377 4.5490 33 1 0.5977 1.9853 -1.4253 34 1 1.9495 3.1183 -1.1852 35 1 5.4572 3.6881 -3.5733 36 1 5.8408 4.2082 -1.9150 37 1 6.2218 2.5499 -2.4383 38 1 5.3225 1.6626 -4.1013 39 1 4.2593 0.1065 -6.5759 40 1 5.5913 -0.3185 -5.4743 41 1 4.2394 -1.4511 -5.7146 42 1 2.0844 -1.0507 -4.6767 43 1 0.0025 -0.9026 -4.5322 44 1 0.7594 -2.0463 -3.3975 45 1 -0.8942 -1.4585 -3.0988 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143142915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:53 Heat of formation + Delta-G solvation = -42.846709 kcal Electronic energy + Delta-G solvation = -24853.398575 eV Core-core repulsion = 21451.073164 eV Total energy + Delta-G solvation = -3402.325412 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.53940 -38.79501 -36.88165 -36.57725 -32.97408 -32.15568 -29.40220 -29.32836 -28.40952 -27.69000 -27.11691 -25.68321 -23.78896 -22.77364 -21.67073 -20.99869 -19.14881 -17.66614 -16.87690 -16.16713 -16.13786 -15.94500 -15.36002 -15.27650 -14.65052 -14.56781 -14.48033 -13.81606 -13.62589 -13.35205 -13.13317 -12.65059 -12.56443 -12.40612 -12.08236 -11.90055 -11.68630 -11.57788 -11.43160 -11.36497 -11.10666 -10.88389 -10.69535 -10.63961 -10.41713 -10.33323 -10.27674 -9.78834 -9.52950 -9.04195 -8.29720 -7.96426 -7.91507 -6.88411 -5.88513 -3.87825 1.51292 1.64336 3.13310 3.38793 3.45700 3.51490 3.85439 3.87820 4.55092 4.72384 4.99236 5.09709 5.11975 5.16802 5.18559 5.22880 5.29569 5.40015 5.46440 5.48168 5.51185 5.57533 5.60850 5.63700 5.72859 6.03941 6.07811 6.13669 6.24582 6.28561 6.45060 6.49342 6.62266 6.70885 6.76024 6.82316 6.93920 7.20343 7.52321 7.54757 7.60873 7.67976 7.98164 8.30512 8.48463 8.77106 9.20188 9.74966 11.22312 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.004916 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.120905 B = 5694.781060 C = 6739.668899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.067 3.933 3 N -0.525 5.525 4 C 0.189 3.811 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.106 3.894 14 C -0.132 4.132 15 C 0.185 3.815 16 O -0.295 6.295 17 C 0.029 3.971 18 C -0.249 4.249 19 C -0.022 4.022 20 C -0.112 4.112 21 C -0.249 4.249 22 C 0.170 3.830 23 O -0.298 6.298 24 C 0.028 3.972 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.028 0.972 31 H -0.003 1.003 32 H 0.258 0.742 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.125 0.875 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.982 -6.219 -19.730 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.061 4.061 3 N -0.248 5.248 4 C 0.064 3.936 5 C -0.533 4.533 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.542 5.542 9 Si 0.722 3.278 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 C -0.022 4.022 14 C -0.134 4.134 15 C 0.138 3.862 16 O -0.207 6.207 17 C -0.066 4.066 18 C -0.268 4.268 19 C -0.022 4.022 20 C -0.168 4.168 21 C -0.268 4.268 22 C 0.124 3.876 23 O -0.211 6.211 24 C -0.067 4.067 25 H 0.056 0.944 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.068 0.932 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.142 0.858 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.141 0.859 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.219 -5.915 -19.227 20.555 hybrid contribution -0.220 -0.503 0.491 0.737 sum 3.999 -6.419 -18.737 20.205 Atomic orbital electron populations 1.22293 0.99308 1.00122 1.01825 1.21890 0.92284 0.91573 1.00379 1.62378 1.59316 1.01801 1.01356 1.19776 0.93659 0.93630 0.86500 1.21209 1.26343 1.14879 0.90915 0.92109 1.24959 0.95588 0.95189 0.98977 1.69977 1.36411 1.22569 1.25206 0.86506 0.79117 0.78843 0.83326 1.19776 1.21169 1.21279 1.20662 0.95827 0.97640 0.88081 1.18447 0.94680 0.99022 1.01273 1.18376 0.91149 0.87037 0.89666 1.86225 1.32960 1.45890 1.55577 1.23033 0.83168 1.00209 1.00181 1.20916 1.02278 1.02405 1.01154 1.19295 0.93446 0.94070 0.95408 1.20770 0.99787 1.00258 0.96008 1.20860 0.97805 1.05820 1.02302 1.18408 0.84762 0.92220 0.92245 1.86268 1.29936 1.48730 1.56126 1.23010 0.99509 0.88316 0.95915 0.94363 0.92193 0.92610 0.93111 0.91370 0.95371 0.98532 0.93225 0.94384 0.90652 0.93176 0.88265 0.92811 0.85753 0.91194 0.91573 0.91633 0.85855 0.93064 0.92824 0.88479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.49 8.13 37.16 0.30 -3.19 16 2 C 0.07 1.44 5.31 -3.82 -0.02 1.42 16 3 N -0.52 -12.35 4.67 -237.52 -1.11 -13.46 16 4 C 0.19 5.18 4.50 -4.98 -0.02 5.16 16 5 C -0.49 -14.50 8.65 -34.44 -0.30 -14.79 16 6 H 0.06 1.79 7.20 -52.49 -0.38 1.41 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 9 Si 0.89 22.42 29.54 -169.99 -5.02 17.40 16 10 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 C 0.11 2.20 4.58 -4.98 -0.02 2.17 16 14 C -0.13 -2.40 4.92 -104.33 -0.51 -2.91 16 15 C 0.18 3.11 6.66 -39.24 -0.26 2.85 16 16 O -0.29 -5.05 9.53 -19.40 -0.18 -5.23 16 17 C 0.03 0.35 9.81 101.05 0.99 1.34 16 18 C -0.25 -3.43 8.69 -39.40 -0.34 -3.77 16 19 C -0.02 -0.27 5.88 -104.67 -0.61 -0.89 16 20 C -0.11 -0.99 10.01 36.00 0.36 -0.63 16 21 C -0.25 -3.31 8.69 -39.41 -0.34 -3.65 16 22 C 0.17 2.69 5.40 -39.24 -0.21 2.48 16 23 O -0.30 -4.47 5.80 -19.44 -0.11 -4.58 16 24 C 0.03 0.28 9.81 101.05 0.99 1.28 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 1.34 6.58 -51.93 -0.34 1.00 16 27 H 0.06 1.07 4.88 -51.93 -0.25 0.82 16 28 H 0.05 1.01 5.32 -51.93 -0.28 0.74 16 29 H 0.07 1.57 7.08 -51.93 -0.37 1.20 16 30 H 0.03 0.83 7.86 -51.93 -0.41 0.43 16 31 H 0.00 -0.09 5.93 -51.93 -0.31 -0.39 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.04 0.79 5.58 -51.93 -0.29 0.50 16 34 H 0.08 1.63 7.27 -51.93 -0.38 1.25 16 35 H 0.05 0.48 7.67 -51.93 -0.40 0.08 16 36 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.05 0.58 7.65 -51.93 -0.40 0.18 16 38 H 0.12 1.41 6.29 -52.49 -0.33 1.08 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 42 H 0.12 1.32 6.29 -52.49 -0.33 0.99 16 43 H 0.05 0.44 7.66 -51.92 -0.40 0.04 16 44 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 45 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 348.60 15.07 5.25 5.25 Total: -1.00 -33.32 348.60 -7.46 -40.77 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.92 Total: -1.61 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -0.10 Total: -11.68 kcal Atomic # 7 Polarization: -39.95 SS G_CDS: -0.37 Total: -40.32 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: -0.30 Total: -9.81 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.32 -7.46 -40.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143142915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.075 kcal (2) G-P(sol) polarization free energy of solvation -33.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds