Wall clock time and date at job start Tue Mar 31 2020 06:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46909 * 109.46632 * 2 1 4 4 C 1.46895 * 111.00229 * 57.85765 * 3 2 1 5 5 C 1.50704 * 109.46920 * 69.51952 * 4 3 2 6 6 H 1.07998 * 119.99993 * 356.18553 * 5 4 3 7 7 C 1.37875 * 120.00039 * 176.19125 * 5 4 3 8 8 N 1.31516 * 119.99746 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00279 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.46997 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47052 * 119.99832 * 9 7 5 12 12 H 1.48502 * 109.47373 * 240.00236 * 9 7 5 13 13 C 1.46897 * 110.99916 * 293.90148 * 3 2 1 14 14 C 1.50700 * 109.47528 * 293.95741 * 13 3 2 15 15 C 1.38628 * 120.05328 * 269.72649 * 14 13 3 16 16 O 1.35892 * 120.03111 * 359.97438 * 15 14 13 17 17 C 1.42898 * 117.00316 * 180.02562 * 16 15 14 18 18 C 1.38774 * 119.94345 * 179.71970 * 15 14 13 19 19 C 1.38179 * 120.05543 * 0.55641 * 18 15 14 20 20 C 1.50696 * 119.94819 * 179.70437 * 19 18 15 21 21 C 1.38175 * 120.10709 * 359.71510 * 19 18 15 22 22 C 1.38633 * 120.05459 * 90.00033 * 14 13 3 23 23 O 1.35904 * 120.02947 * 0.02562 * 22 14 13 24 24 C 1.42901 * 117.00233 * 180.02562 * 23 22 14 25 25 H 1.09006 * 109.46562 * 172.80675 * 1 2 3 26 26 H 1.09001 * 109.46922 * 292.80090 * 1 2 3 27 27 H 1.08998 * 109.47540 * 52.80857 * 1 2 3 28 28 H 1.09000 * 109.47115 * 240.00148 * 2 1 3 29 29 H 1.08995 * 109.47183 * 119.99600 * 2 1 3 30 30 H 1.08991 * 109.47319 * 189.51526 * 4 3 2 31 31 H 1.09003 * 109.47313 * 309.52386 * 4 3 2 32 32 H 0.97001 * 119.99855 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46815 * 53.95866 * 13 3 2 34 34 H 1.09003 * 109.47023 * 173.95272 * 13 3 2 35 35 H 1.08997 * 109.47377 * 59.99774 * 17 16 15 36 36 H 1.09008 * 109.47012 * 179.97438 * 17 16 15 37 37 H 1.08999 * 109.47004 * 299.99209 * 17 16 15 38 38 H 1.07998 * 119.97569 * 180.27593 * 18 15 14 39 39 H 1.09007 * 109.46917 * 270.02198 * 20 19 18 40 40 H 1.09003 * 109.47429 * 30.01508 * 20 19 18 41 41 H 1.08996 * 109.47573 * 150.01874 * 20 19 18 42 42 H 1.07999 * 119.97173 * 179.97438 * 21 19 18 43 43 H 1.09007 * 109.46629 * 299.99984 * 24 23 22 44 44 H 1.09002 * 109.46943 * 59.99585 * 24 23 22 45 45 H 1.08996 * 109.47196 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5071 2.1246 1.1612 5 6 2.1505 1.5959 2.4173 6 1 2.8211 0.7510 2.3660 7 6 1.8828 2.1908 3.6319 8 7 1.0656 3.2194 3.6944 9 14 2.6796 1.5351 5.1890 10 1 3.5501 0.3803 4.8510 11 1 3.4980 2.6048 5.8145 12 1 1.6249 1.0992 6.1391 13 6 1.6711 2.0666 -1.2538 14 6 2.4126 1.4242 -2.3977 15 6 3.6631 1.8956 -2.7665 16 8 4.2215 2.9381 -2.0971 17 6 5.5119 3.3717 -2.5317 18 6 4.3464 1.2986 -3.8165 19 6 3.7765 0.2426 -4.5016 20 6 4.5179 -0.3996 -5.6457 21 6 2.5279 -0.2254 -4.1395 22 6 1.8430 0.3645 -3.0866 23 8 0.6147 -0.0959 -2.7313 24 6 0.0895 -1.1908 -3.4845 25 1 -0.3633 -1.0197 -0.1287 26 1 -0.3633 0.3983 0.9474 27 1 -0.3634 0.6212 -0.8186 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.7423 3.1831 1.0505 31 1 0.4265 1.9972 1.2251 32 1 0.8770 3.6377 4.5490 33 1 0.5977 1.9853 -1.4253 34 1 1.9495 3.1183 -1.1852 35 1 5.4572 3.6881 -3.5733 36 1 5.8408 4.2082 -1.9150 37 1 6.2218 2.5499 -2.4383 38 1 5.3225 1.6626 -4.1013 39 1 4.2593 0.1065 -6.5759 40 1 5.5913 -0.3185 -5.4743 41 1 4.2394 -1.4511 -5.7146 42 1 2.0844 -1.0507 -4.6767 43 1 0.0025 -0.9026 -4.5322 44 1 0.7594 -2.0463 -3.3975 45 1 -0.8942 -1.4585 -3.0988 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143142915.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:52 Heat of formation + Delta-G solvation = -64.949490 kcal Electronic energy + Delta-G solvation = -24854.357024 eV Core-core repulsion = 21451.073164 eV Total energy + Delta-G solvation = -3403.283860 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.67911 -39.89951 -38.64912 -37.61389 -34.85716 -33.70458 -31.01484 -30.44171 -29.89415 -28.61003 -28.36424 -27.19479 -25.26467 -24.71794 -22.73650 -22.23444 -20.90124 -18.74794 -18.34941 -18.00841 -17.25549 -17.21254 -16.72697 -16.47537 -16.33630 -16.10945 -15.67769 -15.54015 -14.68019 -14.47350 -14.31099 -14.27162 -13.80737 -13.48226 -13.40330 -13.18905 -13.09298 -13.04644 -12.70481 -12.59252 -12.55080 -12.44454 -12.36113 -12.29734 -12.15701 -11.85822 -11.59834 -11.40961 -11.24173 -11.13525 -10.57561 -9.17115 -9.00799 -8.77015 -8.15390 -6.25150 0.40000 0.54539 1.39633 1.40795 1.54681 2.12529 2.42209 2.73586 2.86773 3.15359 3.60456 3.77966 4.00605 4.10123 4.12905 4.33465 4.37036 4.40864 4.43666 4.44210 4.47795 4.50334 4.59670 4.71619 4.73879 4.77994 4.79951 4.82983 4.88715 4.99699 5.02215 5.06939 5.11888 5.25999 5.36412 5.40650 5.46085 5.56292 5.64883 5.70593 5.71968 6.12607 6.48656 6.52913 6.59551 6.73988 6.90868 7.43440 8.95329 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.016711 B = 0.004916 C = 0.004154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.120905 B = 5694.781060 C = 6739.668899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.074 3.926 3 N -0.535 5.535 4 C 0.208 3.792 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.001 3.999 8 N -0.936 5.936 9 Si 0.969 3.031 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.276 1.276 13 C 0.119 3.881 14 C -0.175 4.175 15 C 0.168 3.832 16 O -0.334 6.334 17 C 0.022 3.978 18 C -0.251 4.251 19 C -0.014 4.014 20 C -0.110 4.110 21 C -0.248 4.248 22 C 0.167 3.833 23 O -0.323 6.323 24 C 0.018 3.982 25 H 0.069 0.931 26 H 0.025 0.975 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.047 0.953 30 H -0.008 1.008 31 H -0.024 1.024 32 H 0.263 0.737 33 H 0.031 0.969 34 H 0.050 0.950 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.064 0.936 38 H 0.149 0.851 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.154 0.846 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.275 -8.569 -21.645 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.054 4.054 3 N -0.258 5.258 4 C 0.082 3.918 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.196 4.196 8 N -0.577 5.577 9 Si 0.793 3.207 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.202 1.202 13 C -0.009 4.009 14 C -0.177 4.177 15 C 0.122 3.878 16 O -0.247 6.247 17 C -0.073 4.073 18 C -0.270 4.270 19 C -0.014 4.014 20 C -0.166 4.166 21 C -0.267 4.267 22 C 0.121 3.879 23 O -0.236 6.236 24 C -0.076 4.076 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.066 0.934 30 H 0.010 0.990 31 H -0.007 1.007 32 H 0.072 0.928 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.167 0.833 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.172 0.828 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.514 -8.279 -21.171 23.391 hybrid contribution -0.624 0.223 0.957 1.164 sum 4.890 -8.055 -20.214 22.302 Atomic orbital electron populations 1.22115 0.97987 1.01841 1.00003 1.21827 0.93299 0.90119 1.00159 1.62285 1.59533 1.02670 1.01327 1.19385 0.92257 0.92036 0.88145 1.21436 1.26655 1.15048 0.92081 0.92612 1.25889 0.95934 0.95234 1.02587 1.70109 1.37484 1.23681 1.26412 0.85349 0.78310 0.78416 0.78610 1.18990 1.20318 1.20190 1.20432 0.95888 0.96475 0.88089 1.18373 0.96055 1.01454 1.01789 1.18635 0.91162 0.87349 0.90667 1.86166 1.35190 1.46434 1.56900 1.23303 0.81382 1.00834 1.01734 1.21198 1.03095 1.02529 1.00197 1.19839 0.93176 0.92906 0.95526 1.20863 0.99975 1.00929 0.94829 1.21196 0.97902 1.06193 1.01407 1.18503 0.85193 0.91664 0.92583 1.86216 1.29710 1.50203 1.57477 1.23330 1.00222 0.87368 0.96692 0.91189 0.95558 0.92311 0.91138 0.93435 0.98988 1.00683 0.92804 0.95068 0.93153 0.90845 0.87530 0.91738 0.83320 0.89441 0.90408 0.90093 0.82846 0.91220 0.91545 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.48 8.13 71.98 0.59 -5.89 16 2 C 0.07 3.25 5.31 86.30 0.46 3.70 16 3 N -0.53 -26.56 4.67 -905.36 -4.22 -30.78 16 4 C 0.21 12.16 4.50 85.56 0.39 12.55 16 5 C -0.51 -31.34 8.65 25.60 0.22 -31.12 16 6 H 0.06 3.39 7.20 -2.91 -0.02 3.36 16 7 C 0.00 0.05 5.46 84.65 0.46 0.51 16 8 N -0.94 -59.12 13.29 21.45 0.28 -58.83 16 9 Si 0.97 46.66 29.54 68.60 2.03 48.69 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 13 C 0.12 5.26 4.58 85.56 0.39 5.65 16 14 C -0.17 -6.49 4.92 -19.68 -0.10 -6.59 16 15 C 0.17 5.72 6.66 22.49 0.15 5.87 16 16 O -0.33 -11.86 9.53 -92.33 -0.88 -12.74 16 17 C 0.02 0.50 9.81 113.37 1.11 1.61 16 18 C -0.25 -6.45 8.69 22.38 0.19 -6.25 16 19 C -0.01 -0.31 5.88 -19.89 -0.12 -0.42 16 20 C -0.11 -1.43 10.01 71.23 0.71 -0.72 16 21 C -0.25 -5.87 8.69 22.38 0.19 -5.67 16 22 C 0.17 5.13 5.40 22.49 0.12 5.25 16 23 O -0.32 -9.30 5.80 -92.46 -0.54 -9.84 16 24 C 0.02 0.32 9.81 113.37 1.11 1.43 16 25 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 26 H 0.03 1.21 6.58 -2.39 -0.02 1.19 16 27 H 0.06 2.32 4.88 -2.39 -0.01 2.31 16 28 H 0.07 2.82 5.32 -2.39 -0.01 2.80 16 29 H 0.05 2.25 7.08 -2.39 -0.02 2.23 16 30 H -0.01 -0.52 7.86 -2.39 -0.02 -0.54 16 31 H -0.02 -1.50 5.93 -2.39 -0.01 -1.51 16 32 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 33 H 0.03 1.39 5.58 -2.38 -0.01 1.37 16 34 H 0.05 2.40 7.27 -2.39 -0.02 2.38 16 35 H 0.07 1.31 7.67 -2.39 -0.02 1.29 16 36 H 0.11 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.06 1.31 7.65 -2.39 -0.02 1.29 16 38 H 0.15 2.94 6.29 -2.91 -0.02 2.92 16 39 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 41 H 0.08 0.85 8.08 -2.39 -0.02 0.83 16 42 H 0.15 2.61 6.29 -2.91 -0.02 2.59 16 43 H 0.07 0.97 7.66 -2.38 -0.02 0.95 16 44 H 0.07 1.01 7.66 -2.39 -0.02 0.99 16 45 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -76.11 348.60 3.54 -72.57 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.98 Total: 11.03 kcal Atomic # 6 Polarization: -25.97 SS G_CDS: 5.89 Total: -20.08 kcal Atomic # 7 Polarization: -85.67 SS G_CDS: -3.94 Total: -89.61 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -1.42 Total: -22.58 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -76.11 3.54 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143142915.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.617 kcal (2) G-P(sol) polarization free energy of solvation -76.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds